Vegetation History and Archaeobotany

, Volume 21, Issue 2, pp 131–145 | Cite as

Cultivation as slow evolutionary entanglement: comparative data on rate and sequence of domestication

  • Dorian Q. Fuller
  • Eleni Asouti
  • Michael D. Purugganan
Original Article

Abstract

Recent studies have suggested that domestication was a slower evolutionary process than was previously thought. We address this issue by quantifying rates of phenotypic change in crops undergoing domestication, including five crops from the Near East (Triticum monococcum, T. dicoccum, Hordeum vulgare, Pisum sativum, Lens culinaris) and six crops from other regions (Oryza sativa, Pennisetum glaucum, Vigna radiata, Cucumis melo, Helianthus annus, Iva annua). We calculate rates using the metrics of darwin units and haldane units, which have been used in evolutionary biology, and apply this to data on non-shattering cereal spikelets and seed size. Rates are calculated by considering data over a 4,000-year period from archaeological sites in the region of origin, although we discuss the likelihood that a shorter period of domestication (1,000–2,000) years may be more appropriate for some crops, such as pulses. We report broadly comparable rates of change across all the crops and traits considered, and find that these are close to the averages and median values reported in various evolutionary biological studies. Nevertheless, there is still variation in rates between domesticates, such as melon seeds increasing at twice the rate of cereals, and between traits, such as non-shattering evolving faster than grain size. Such comparisons underline the utility of a quantitative approach to domestication rates, and the need to develop larger datasets for comparisons between crops and across regions.

Keywords

Domestication syndrome Unconscious selection Southwest Asia Neolithic Palaeoethnobotany 

Supplementary material

334_2011_329_MOESM1_ESM.doc (256 kb)
Supplementary material 1 (DOC 256 kb)

References

  1. Abbo S, Lev-Yadun S, Gopher A (2010a) Agricultural origins: centres and non-centres; a near eastern reappraisal. Crit Rev Plant Sci 29:317–328CrossRefGoogle Scholar
  2. Abbo S, Rachamim E, Zehavi Y, Zezak I, Lev-Yadun S, Gopher A (2010b) Experimental growing of wild pea in Israel and its bearing on Near Eastern plant domestication. Ann Bot 107:1,399–1404Google Scholar
  3. Allaby RG (2010) Integrating the processes in the evolutionary system of domestication. J Exp Bot 61:935–944CrossRefGoogle Scholar
  4. Allaby RG, Fuller DQ, Brown TA (2008) The genetic expectations of a protracted model for the origins of domesticated crops. Proc Natl Acad Sci 105:13,982–13986CrossRefGoogle Scholar
  5. Allaby RG, Brown T, Fuller DQ (2010) A simulation of the effect of inbreeding on crop domestication genetics with comments on the integration of archaeobotany and genetics: a reply to Honne and Heun. Veget Hist Archaeobot 19:151–158CrossRefGoogle Scholar
  6. Asch DL, Asch NB (1985) Prehistoric plant cultivation in West-Central Illinois. In: Ford RI (ed) Prehistoric food production in North America. Anthropological Papers 75. Museum of Anthropology, University of Michigan, Ann Arbor, pp 149–204Google Scholar
  7. Badr A, Müller K, Schäfer-Pregl R, El Rabey H, Effgen S, Ibrahim HH, Pozzi C, Rohde W, Salamini F (2000) On the origin and domestication history of barley. Mol Biol Evol 17:499–510Google Scholar
  8. Bellwood P (2005) First farmers: the origins of agricultural societies. Blackwell, OxfordGoogle Scholar
  9. Bischoff D, Reingruber A,Thissen L (2006) CANeW 14C databases and 14C charts. Upper Mesopotamia (SE Turkey, N Syria and N Iraq) 10,000-5000 cal BC. In the Radiocarbon Lab Köln databases. Accessed from the world wide web (1 March 2010): http://www.ufg.uni-koeln.de/radiocarbonlab/atabase/indexindex.html
  10. Bogaard A, Charles M, Twiss KC, Fairbairn A, Yalman N, Filipović D, Demirergi CA (2009) Private parties and celebrated surplus: storing and sharing food at Neolithic Çatalhöyük, central Anatolia. Antiquity 83:649–668Google Scholar
  11. Bone E, Farres A (2001) Trends and rates of microevolution in plants. Genetica 112–113:165–182CrossRefGoogle Scholar
  12. Braadbart F, Wright PJ (2007) Changes in mass and dimensions of sunflower (Helianthus annuus L.) achenes and seeds due to carbonization. Econ Bot 61:137–163CrossRefGoogle Scholar
  13. Bronk Ramsey C (2005) OxCal progam v3.10. Available online from Oxford radiocarbon: http://www.rlaha.ox.ac.uk/O/oxcal.php
  14. Childe VG (1935) New light on the most ancient East. Kegan & Paul, LondonGoogle Scholar
  15. Colledge S (2001) Plant exploitation on Epipalaeolithic and early Neolithic sites in the Levant. BAR Int Ser 986. Archaeopress, OxfordGoogle Scholar
  16. Colledge S (2004) Reappraisal of the archaeobotanical evidence for the emergence and dispersal of the “founder crops”. In: Peltenburg EJ, Wasse A (eds) Neolithic revolution: new perspectives on southwest Asia in light of recent discoveries on Cyprus. Levant Supplementary Series. Oxbow Books, Oxford, pp 49–58Google Scholar
  17. Colledge S, Conolly J (2010) Reassessing the evidence for the cultivation of wild crops during the Younger Dryas at Tell Abu Hureyra, Syria. Env Archaeol 15:124–138CrossRefGoogle Scholar
  18. Edwards PC, Meadows J, Sayej G, Westaway M (2004) From the PPNA to the PPNB: new views from the southern Levant after excavations at Zahrat adh-Dhra‘2 in Jordan. Paléorient 30:21–60CrossRefGoogle Scholar
  19. Fairbairn A, Martinoli D, Butler A, Hillman G (2007) Wild plant seed storage at Neolithic Çatalhöyük East, Turkey. Veget Hist Archaeobot 16:467–479CrossRefGoogle Scholar
  20. Feldman M, Kislev ME (2007) Domestication of emmer wheat and evolution of free-threshing tetraploid wheat. Israel J Plant Sci 55:207–221CrossRefGoogle Scholar
  21. Fox GP, Kelly A, Poulsen D, Inkerman A, Henry R (2006) Selecting for increased barley grain size. J Cereal Sci 43:198–208CrossRefGoogle Scholar
  22. Fuller DQ (2007) Contrasting patterns in crop domestication and domestication rates: recent archaeobotanical insights from the Old World. Ann Bot 100:903–909CrossRefGoogle Scholar
  23. Fuller DQ (2008) Archaeological science in field training. In: Ucko P, Qin L, Hubert J (eds) From concepts of the past to practical strategies: the teaching of archaeological field techniques. Saffron Press, London, pp 183–205Google Scholar
  24. Fuller DQ, Allaby R (2009) Seed dispersal and crop domestication: shattering, germination and seasonality in evolution under cultivation. In: Ostergaard L (ed) Fruit development and seed dispersal. Annual plant reviews 38. Wiley-Blackwell, Oxford, pp 238–295CrossRefGoogle Scholar
  25. Fuller DQ, Boivin N, Korisettar R (2007) Dating the Neolithic of South India: new radiometric evidence for key economic, social and ritual transformations. Antiquity 81(313):755–778Google Scholar
  26. Fuller DQ, Qin L, Zheng Y, Zhao Z, Chen X, Hosoya LA, Sun G (2009) The domestication process and domestication rate in rice: spikelet bases from the Lower Yangzte. Science 323:1,607–1610CrossRefGoogle Scholar
  27. Fuller DQ, Allaby R, Stevens C (2010a) Domestication as innovation: the entanglement of techniques, technology and chance in the domestication of cereal crops. World Archaeol 42:13–28CrossRefGoogle Scholar
  28. Fuller DQ, Sato YI, Castillo C, Qin L, Weisskopf AR, Kingwell-Banham EJ, Song J, Ahn SM, Van Etten J (2010b) Consilience of genetics and archaeobotany in the entangled history of rice. Archaeol Anthropol Sci 2:115–131CrossRefGoogle Scholar
  29. Gegas VC, Nazari A, Griffiths S, Simmonds J, Fish L, Orford S, Sayers L, Doonan J, Snape J (2010) A genetic framework for grain size and shape variation in wheat. Plant Cell 22:1,046–1,056CrossRefGoogle Scholar
  30. Gingerich PD (1993) Quantification and comparison of evolutionary rates. Am J Sci 293A:453–478CrossRefGoogle Scholar
  31. Gingerich PD (2001) Rates of evolution on the time scale of the evolutionary process. Genetica 112:127–144CrossRefGoogle Scholar
  32. Grant PR, Grant BR (1995) Predicting microevolutionary responses to directional selection on heritable variation. Evolution 49:241–251CrossRefGoogle Scholar
  33. Gu XY, Kianian S, Hareland GA, Hoffer BL, Foley ME (2005) Genetic analysis of adaptive syndromes interrelated with seed dormancy in weedy rice (Oryza sativa). Theor Appl Genet 110:1,108–118CrossRefGoogle Scholar
  34. Haldane JBS (1949) Suggestions as to quantitative measurement of rates of evolution. Evolution 3:51–53CrossRefGoogle Scholar
  35. Haldorsen S, Akan H, Çelik B, Heun M (2011) The climate of the Younger Dryas as a boundary for Einkorn domestication. Veget Hist Archaeobot 20:305–318Google Scholar
  36. Harlan JR (1995) The living fields. Cambridge University Press, CambridgeGoogle Scholar
  37. Hendry AP, Kinnison MT (1999) The pace of modern life: measuring rates of contemporary microevolution. Evolution 53:1,637–1,653CrossRefGoogle Scholar
  38. Hendry AP, Farrugia TJ, Kinnison MT (2008) Human influences on rates of phenotypic change in wild animal populations. Mol Ecol 17:20–29CrossRefGoogle Scholar
  39. Heun M, Schäfer-Pregl R, Klawan D, Castagna R, Accerbi M, Borghi B, Salamini F (1997) Site of einkorn wheat domestication identified by DNA fingerprinting. Science 278:1,312–1,314CrossRefGoogle Scholar
  40. Hillman GC, Davies MS (1990) Domestication rates in wild-type wheats and barley under primitive cultivation. Biol J Linn Soc 39:39–78CrossRefGoogle Scholar
  41. Hillman GC, Davies MS (1992) Domestication rate in wild wheats and barley under primitive cultivation: preliminary results and archaeological implications of field measurements of selection coefficient. In: Anderson PC (ed) Préhistoire de l’agriculture: nouvelles approches expérimentales et ethnographiques. Monographie du Centre de Recherches Archéologiques 6. Éditions du CNRS, Paris, pp 113–158Google Scholar
  42. Honne BI, Heun M (2009) On the domestication genetics of self fertilizing plants. Veget Hist Archaeobot 18:269–272CrossRefGoogle Scholar
  43. Innan H, Kim Y (2004) Pattern of polymorphism after strong artificial selection in a domestication event. Proc Natl Acad Sci 101:10,667–10,672CrossRefGoogle Scholar
  44. Kato J (1990) Heritability for grain size in rice estimated from parent-offspring correlation and selection response. Jap J Breed 40:313–320Google Scholar
  45. Kinnison MT, Hendry AP (2001) The pace of modern life II: from rates of contemporary microevolution to pattern and process. Genetica 112–113:145–164CrossRefGoogle Scholar
  46. Kislev ME (1997) Early agriculture and paleoecology of Netiv Hagdud. In: Bar-Yosef O, Gopher A (eds) An early Neolithic village in the Jordan valley. Part I: the archaeology of Netiv Hagdud. Peabody Museum of Archaeology and Ethnology, Cambridge, pp 203–230Google Scholar
  47. Kislev ME, Weiss E, Hartmann A (2004) Impetus for sowing and the beginning of agriculture: ground collecting of wild cereals. Proc Natl Acad Sci 101:2,692–2,695CrossRefGoogle Scholar
  48. Kozlowski SK, Aurenche O (2005) Territories, boundaries and cultures in the Near East. BAR Int Ser 1362. Archaeopress, OxfordGoogle Scholar
  49. Ladizinsky G (1993) Lentil domestication: on the quality of evidence and arguments. Econ Bot 47:60–64CrossRefGoogle Scholar
  50. Lucas L, Colledge S, Simmons A, Fuller DQ (2011) Crop introduction and accelerated island evolution: archaeobotanical evidence from ‘Ais Yiorkis and Pre-Pottery Neolithic Cyprus. Veget Hist Archaeobot. doi:10.1007/s00334-011-0323-1 [this volume]
  51. Manning K, Pelling R, Higham T, Schwenniger J-L, Fuller DQ (2011) 4500-year old domesticated pearl millet (Pennisetum glaucum) from the Tilemsi Valley, Mali: new insights into an alternative cereal domestication pathway. J Archaeol Sci 38:312–322CrossRefGoogle Scholar
  52. Meadows J (2004) The earliest farmers? Archaeobotanical research at Pre-Pottery Neolithic A sites in Jordan. In: al-Khraysheh F (ed) Studies in the history and archaeology of Jordan VIII: archaeological and historical perspectives on society culture and identity. Department of Antiquities of Jordan, Amman, pp 119–128Google Scholar
  53. Pearson ES, Hartley HO (1976) Biometrika tables for statisticians. Biometrika Trust, CambridgeGoogle Scholar
  54. Peleg Z, Fahima T, Korol AB, Abbo S, Saranga Y (2011) Genetic analysis of wheat domestication and evolution under domestication. J Exp Bot (advanced access on-line: doi:10.1093/jxb/err206)
  55. Purugganan MD, Fuller DQ (2009) The nature of selection during plant domestication. Nature 457:843–848CrossRefGoogle Scholar
  56. Purugganan MD, Fuller DQ (2011) Archaeological data reveal slow rates of evolution during plant domestication. Evolution 65:171–183CrossRefGoogle Scholar
  57. Reimer PJ, Baillie MGL, Bard E, Bayliss A, Beck JW, Blackwell PG, Bronk Ramsey C, Buck CE, Burr GS, Edwards RL, Friedrich M, Grootes PM, Guilderson TP, Hajdas I, Heaton TJ, Hogg AG, Hughen KA, Kaiser KF, Kromer B, McCormac FG, Manning SW, Reimer RW, Richards DA, Southon JR, Talamo S, Turney C, van der Plicht J, Weyhenmeyer CE (2009) IntCal09 and Marine09 radiocarbon age calibration curves, 0–50,000 years cal. b.p. Radiocarbon 51:1,111–1,150Google Scholar
  58. Reznick DN, Shaw FH, Rodd FH, Shaw RG (1997) Evaluation of the rate of evolution in natural populations of guppies (Poecilia reticulata). Science 27:1,934–1,937Google Scholar
  59. Roopnarine PD (2003) Analysis of rates of morphologic evolution. Ann Rev Ecol Evol Syst 34:605–632CrossRefGoogle Scholar
  60. Sadras VO (2007) Evolutionary aspects of the trade-off between seed size and number in crops. Field Crops Res 100:125–138CrossRefGoogle Scholar
  61. Savard M, Nesbitt M, Jones MK (2006) The role of wild grasses in subsistence and sedentism: new evidence from the northern Fertile Crescent. World Archaeol 38:179–196CrossRefGoogle Scholar
  62. Schoener TW (2011) The newest synthesis: understanding the interplay of evolutionary and ecological dynamics. Science 331:426–429CrossRefGoogle Scholar
  63. Shomura A, Izawa T, Ebana K, Ebitani T, Kanegae H, Konishi S, Yano M (2008) Deletion in a gene associated with grain size increased yields during rice domestication. Nat Genet 40:1,023–1,028CrossRefGoogle Scholar
  64. Smith BD (1992) Rivers of change. Essays on early agriculture in Eastern North America. Smithsonian Institution, WashingtonGoogle Scholar
  65. Tanno K, Willcox G (2006) How fast was wild wheat domesticated? Science 311:1,886CrossRefGoogle Scholar
  66. Tanno K, Willcox G (2011) Distinguishing wild and domestic wheat and barley spikelets from early Holocene sites in the Near East. Veget Hist Archaeobot. doi:10.1007/s00334-011-0316-0 [this volume]
  67. Thissen L, Cessford C, Newton M (2007) CANeW 14C databases and 14C charts. Central Anatolia and Cilicia 10,000–5000 cal b.c. In the Radiocarbon Lab Köln databases. http://www.ufg.unikoeln.de/radiocarbonlab/database/indexindex.html. Accessed 1 Mar 2010
  68. Thompson JN (2005) The geographic mosaic of coevolution. University of Chicago Press, ChicagoGoogle Scholar
  69. Van Zeist WA, Bakker-Heeres JH (1985) Archaeobotanical studies in the Levant 1. Neolithic sites in the Damascus Basin: Aswad, Ghoraifé, Ramad. Palaeohistoria 24:165–256Google Scholar
  70. Van Zeist WA, de Roller GJ (1992) The plant husbandry of aceramic Çayönü, SE Turkey. Palaeohistoria 33(34):65–96Google Scholar
  71. Van Zeist WA, de Roller GJ (1995) Plant remains from Aşıklı Höyük, a pre-pottery Neolithic site in central Anatolia. Veget Hist Archaeobot 4:179–185CrossRefGoogle Scholar
  72. Van Zeist WA, Smith PEL, Palfenier RM, Suwijn M, Casparie WA (1986) An archaeobotanical study of Ganj Dareh Tepe, Iran. Palaeohistoria 26:201–224Google Scholar
  73. Weeden NF (2007) Genetic changes accompanying the domestication of Pisum sativum: Is there a common genetic basis to the ‘Domestication Syndrome’ for Legumes? Ann Bot 100:1,017–1,025CrossRefGoogle Scholar
  74. Weiss E, Kislev ME, Hartmann A (2006) Autonomous cultivation before domestication. Science 312:1,608–1,610CrossRefGoogle Scholar
  75. Willcox G (2004) Measuring grain size and identifying Near Eastern cereal domestication: evidence from the Euphrates Valley. J Archaeol Sci 31:145–150CrossRefGoogle Scholar
  76. Willcox G (2011) Searching for the origins of arable weeds in the Near East. Veget Hist Archaeobot. doi:10.1007/s00334-011-0307-1 [this volume]
  77. Willcox G, Fornite S (1999) Impressions of wild cereal chaff in pisé from the 10th millennium uncal b.p. at Jerf et Ahmar and Mureybet: Northern Syria. Veget Hist Archaeobot 8:21–24CrossRefGoogle Scholar
  78. Willcox G, Fornite S, Herveux L (2008) Early Holocene cultivation before domestication in northern Syria. Veget Hist Archaeobot 17:313–325CrossRefGoogle Scholar
  79. Willcox G, Buxo R, Herveux L (2009) Late Pleistocene and Early Holocene climate and the beginnings of cultivation in northern Syria. Holocene 19:151–158CrossRefGoogle Scholar
  80. Wollstonecroft M, Hroudova Z, Hillman GC, Fuller DQ (2011) Bolboschoenus glaucus, a new species in the flora of the ancient Near East. Veget Hist Archaeobot 20:459–470CrossRefGoogle Scholar
  81. Young BA (1991) Heritability of resistance to seed shattering in kleingrass. Crop Sci 31:1,156–1,158CrossRefGoogle Scholar
  82. Zhang LB, Zhu Q, Wu ZQ, Ross-Ibarra J, Gaut B, Ge S, Sang T (2009) Selection on grain shattering genes and rates of rice domestication. New Phytol 184:708–720CrossRefGoogle Scholar
  83. Zohary D (2004) Unconscious selection and the evolution of domesticated plants. Econ Bot 58:5–10CrossRefGoogle Scholar
  84. Zohary D, Hopf M (2000) Domestication of plants in the Old World, 3rd edn. Oxford University Press, OxfordGoogle Scholar

Copyright information

© Springer-Verlag 2011

Authors and Affiliations

  • Dorian Q. Fuller
    • 1
  • Eleni Asouti
    • 2
  • Michael D. Purugganan
    • 3
  1. 1.Institute of ArchaeologyUniversity College LondonLondonUK
  2. 2.School of Archaeology, Classics and EgyptologyUniversity of LiverpoolLiverpoolUK
  3. 3.Department of Biology and Center for Genomics and Systems BiologyNew York UniversityNew YorkUSA

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