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Revelation of ancestral roles of KNOX genes by a functional analysis of Physcomitrella homologues

  • Cell Biology and Morphogenesis
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Abstract

KNOX genes are indispensable elements of indeterminate apical growth programmes of vascular plant sporophytes. Since little is known about the roles of such genes in non-vascular plants, functional analysis of moss KNOX homologues (MKN genes) was undertaken using the genetically amenable model plant, Physcomitrella patens. Three MKN genes were inactivated by targeted gene knockout to produce single, double and triple mutants. MKN2 (a class 1 KNOX gene) mutants were characterised by premature sporogenesis, abnormal sporophyte ontogeny and irregular spore development. MKN4 (a second class 1 gene) mutants were phenotypically normal. MKN1-3 (a class 2 KNOX gene) mutants exhibited defects in spore coat morphology. Analysis of double and triple mutants revealed that the abnormal sporophytic phenotype of MKN2 mutants was accentuated by mutating MKN4 and to a lesser degree by mutating MKN1-3. The aberrant spore phenotype of MKN1-3 and MKN2 mutants was exacerbated by mutating MKN4. This study provides the first instance in which an abnormal phenotype has been associated with the disruption of a class 2 KNOX gene as well as the first demonstrated case of functional redundancy between a class 1 and a class 2 KNOX gene. We conclude that KNOX genes play significant roles in programming sporophytic development in moss and we provide evidence that ancestral function(s) of this gene family were instrumental in the successful transition of plants to a terrestrial environment.

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Abbreviations

DIG:

Digoxigenin

gDNA:

Genomic deoxyribonucleic acid

GUS:

β-Glucuronidase

HPT:

Hygromycin phosphotransferase

NPT:

Neomycin phosphotransferase

paba:

p-Aminobenzoic acid

RAGE:

Rapid amplification of genomic ends

SAM:

Shoot apical meristem

References

  • Ashton NW, Champagne CEM, Weiler T, Verkoczy LK (2000) The bryophyte Physcomitrella patens replicates extrachromosomal transgenic elements. New Phytol 146:391–402

    Article  Google Scholar 

  • Ashton NW, Cove DJ (1977) The isolation and preliminary characterization of auxotrophic and analogue-resistant mutants of the moss, Physcomitrella patens. Mol Gen Genet 154:87–95

    Article  Google Scholar 

  • Ashton NW, Schulze A, Hall P, Bandurski RS (1985) Estimation of indole-3-acetic acid in gametophytes of the moss, Physcomitrella patens. Planta 164:142–144

    Article  PubMed  CAS  Google Scholar 

  • Barton MK, Poethig RS (1993) Formation of the shoot apical meristem in Arabidopsis thaliana: an analysis of development in the wild type and in the shoot meristemless mutant. Development 119:823–831

    Google Scholar 

  • Bevan MW, Flavell RB, Chilton M-D (1983) A chimaeric antibiotic resistance gene as a selectable marker for plant cell transformation. Nature 304:184–187

    Article  CAS  Google Scholar 

  • Bharathan G, Goliber TE, Moore C, Kessler S, Pham T, Sinha NR (2002) Homologies in leaf form inferred from KNOX1 gene expression during development. Science 296:1858–1860

    Article  PubMed  CAS  Google Scholar 

  • Bharathan G, Janssen B-J, Kellogg EA, Sinha N (1999) Phylogenetic relationships and evolution of the KNOTTED class of plant homeodomain proteins. Mol Biol Evol 16:553–563

    PubMed  CAS  Google Scholar 

  • Brown RC, Lemmon BE (1985) Phylogenetic aspects of sporogenesis in Archidium. Monog Syst Bot Mo Bot Gard 11:25–39

    Google Scholar 

  • Brown RC, Lemmon BE (1984) Spore wall development in Andreaea (Musci: Andreaeopsida). Am J Bot 71: 412–420

    Article  Google Scholar 

  • Byrne ME, Simorowski J, Martienssen RA (2002) ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis. Development 129:1957–1965

    PubMed  CAS  Google Scholar 

  • Carles CC, Fletcher JC (2003) Shoot apical meristem maintenance: the art of a dynamic balance. Trends Plant Sci 8:394–401

    Article  PubMed  CAS  Google Scholar 

  • Champagne CEM, Ashton N (2001) Ancestry of KNOX genes revealed by bryophyte (Physcomitrella patens) homologs. New Phytol 150:23–36

    Article  CAS  Google Scholar 

  • Courtice GRM, Ashton NW, Cove DJ (1978) Evidence for the restricted passage of metabolites into the sporophyte of the moss Physcomitrella patens (Hedw.). Br Eur J Bryol 10:191–198

    Google Scholar 

  • Cove DJ, Schild A, Ashton NW, Hartmann E (1978) Genetic and physiological studies of the effect of light on the development of moss, Physcomitrella patens. Photochem Photobiol 27:249–254

    Google Scholar 

  • Dean G, Casson S, Lindsey K (2004) KNAT6 gene of Arabidopsis is expressed in roots and is required for correct lateral root formation. Plant Mol Biol 54:71–84

    Article  PubMed  CAS  Google Scholar 

  • Doyle WT (1970) The biology of higher cryptogams. Current concepts in biology series. Collier-Macmillan Limited, London

    Google Scholar 

  • Endrizzi K, Moussian B, Haecker A, Levin JZ, Laux T (1996) The SHOOT MERISTEMLESS gene is required for maintenance of undifferentiated cells in Arabidopsis shoot and floral meristems and acts at a different regulatory level than the meristem genes WUSCHEL and ZWILLE. Plant J 10:967–979

    Article  PubMed  CAS  Google Scholar 

  • Floyd SK, Bowman JL (2007) The ancestral developmental tool kit of land plants. Int J Plant Sci 168:1–35

    Article  CAS  Google Scholar 

  • Gehring WJ (1992) The homeobox in perspective. Trends Biochem Sci 17:277–280

    Article  PubMed  CAS  Google Scholar 

  • Gehring WJ, Muller M, Affolter M, Percival-Smith A, Billeter M, Qian YQ, Otting G, Wuthrich K (1990) The structure of the homeodomain and its functional implications. Trends Genet 6:323–329

    Article  PubMed  CAS  Google Scholar 

  • Gilbert SF, Opitz JM, Raff RA (1996) Resynthesizing evolutionary and developmental biology. Dev Biol 173:357–372

    Article  PubMed  CAS  Google Scholar 

  • Girke T, Schmidt H, Zahringer U, Reski R, Heinz E (1998) Identification of a novel delta 6-acyl-group desaturase by targeted gene disruption in Physcomitrella patens. Plant J 15:39–48

    Article  PubMed  CAS  Google Scholar 

  • Graham LE, Cook ME, Busse JS (2000) The origin of plants: body plan changes contributing to a major evolutionary radiation. PNAS 97:4535–4540

    Article  PubMed  CAS  Google Scholar 

  • Graham LKE, Wilcox LW (2000) The origin of alternation of generations in land plants: a focus on matrotrophy and hexose transport. Phil Trans R Soc B Biol Sci 355:757–767

    Article  CAS  Google Scholar 

  • Grimsley NH, Ashton NW, Cove DJ (1977) Complementation analysis of auxotrophic mutants of the moss, Physcomitrella patens, using protoplast fusion. Mol Gen Genet 155:103–107

    Article  Google Scholar 

  • Gritz L, Davies (1983) Plasmid-encoded hygromycin B resistance: the sequence of hygromycin B phosphotransferase gene and its expression in Escherichia coli and Saccharomyces cerevisiae. Gene 25:179–188

    Article  PubMed  CAS  Google Scholar 

  • Guillet-Claude C, Isabel N, Pelgas B, Bousquet J (2004) The evolutionary implications of knox-1 gene duplications in conifers: correlated evidence from phylogeny, gene mapping, and analysis of functional divergence. Mol Biol Evol 21:2232–2245

    Article  PubMed  CAS  Google Scholar 

  • Hake S, Vollbrecht E, Freeling M (1989) Cloning Knotted, the dominant morphological mutant in maize using Ds2 as a transposon tag. EMBO J 8:15–22

    PubMed  CAS  Google Scholar 

  • Hake S, Smith HMS, Holtan H, Magnani E, Mele G, Ramirez J (2004) The role of KNOX genes in plant development. Annu Rev Cell Dev Biol 20:125–151

    Article  PubMed  CAS  Google Scholar 

  • Harrison CJ, Corley SB, Moylan EC, Alexander DL, Scotland RW, Langdale JA (2005) Independent recruitment of a conserved developmental mechanism during leaf evolution. Nature 434:509–514

    Article  PubMed  CAS  Google Scholar 

  • Hjortswang HI, Sundås-Larsson A, Bharathan G, Bozhkov PV, von Arnold S, Vahala T (2002) KNOTTED1-like homeobox genes of a gymnosperm, Norway spruce, expressed during somatic embryogenesis. Plant Physiol Biochem 40:837–843

    Article  CAS  Google Scholar 

  • Hohe A, Egener T, Lucht JM, Holtorf H, Reinhard C, Schween G, Reski R (2004) An improved and highly standardized transformation procedure allows efficient production of single and multiple targeted gene-knockouts in a moss, Physcomitrella patens. Curr Genet 44:339–347

    Article  PubMed  CAS  Google Scholar 

  • Jensen KG, Hulbary RL (1978) Chloroplast development during sporogenesis in six species of mosses. Am J Bot 65:823–833

    Article  Google Scholar 

  • Kamisugi Y, Cuming AC, Cove DJ (2005) Parameters determining the efficiency of gene targeting in the moss Physcomitrella patens. Nucleic Acids Res 33(19):e173

    Article  PubMed  CAS  Google Scholar 

  • Kamisugi Y, Schlink K, Rensing SA, Schween G, von Stackelberg M, Cuming AC, Reski R, Cove DJ (2006) The mechanism of gene targeting in Physcomitrella patens: homologous recombination, concatenation and multiple integration. Nucleic Acids Res 34:6205–6214

    Article  PubMed  CAS  Google Scholar 

  • Kammerer W, Cove DJ (1996) Genetic analysis of the result of re-transformation of transgenic lines of the moss, Physcomitrella patens. Mol Gen Genet 250:380–382

    PubMed  CAS  Google Scholar 

  • Kerstetter R, Vollbrecht E, Lowe B, Veit B, Yamaguchi J, Hake S (1994) Sequence analysis and expression patterns divide the maize knotted1-like homeobox genes into two classes. Plant Cell 6:1877–1887

    Article  PubMed  CAS  Google Scholar 

  • Knight CD, Cove DJ, Boyd PJ, Ashton NW (1988) The isolation of biochemical and developmental mutants in Physcomitrella patens. In: Glime JM (ed) Methods in bryology. Proceedings of the bryological methods workshop, Mainz, 17–23 July 1987. Hattori Botanical Laboratory, Nichinan, pp 47–58

  • Knoop B (1984) Development in bryophytes. In: Dyer AF, Duckett JG (eds) The experimental biology of bryophytes. Academic, London, pp 143–176

    Google Scholar 

  • Liu X, Baird V (2001) Rapid amplification of genomic DNA ends by Nla III partial digestion and polynucleotide tailing. Plant Mol Biol Rep 19:261–267

    Google Scholar 

  • McClymont JW, Larson DA (1964) An electron microscope study of spore wall structure in the Musci. Am J Bot 51:195–200

    Article  Google Scholar 

  • Mogensen GS (1978) Spore development and germination in Cinclidium (Mniaceae, Bryophyta), with special reference to spore mortality and anisospory. Can J Bot 56:1032–1060

    Article  Google Scholar 

  • Mogensen GS (1981) The biological significance of morphological characters in bryophytes: The spore. Bryologist 84:187–207

    Article  Google Scholar 

  • Mueller DMJ (1974) Spore wall formation and chloroplast development during sporogenesis in the moss Fissidens limbatus. Am J Bot 61:525–534

    Article  Google Scholar 

  • Nakosteen PC, Hughes KW (1978) Sexual life cycle of three species of Funariaceae in culture. Bryologist 81:307–314

    Article  Google Scholar 

  • Neidhart HV (1979) Comparative studies of sporogenesis in bryophytes. In: Clarke GCS, Duckett JG (eds) Bryophyte systematics. Academic, New York, pp 251–280

    Google Scholar 

  • Parihar NS (1961) An Introduction to Embryophyta, vol I, Bryophyta, 4th edn. Central Book Depot, Allahabad, pp 196–224

  • Pham T, Sinha N (2003) Role of KNOX genes in shoot development of Welwitschia mirabilis. Int J Plant Sci 164:333–343

    Article  CAS  Google Scholar 

  • Raff RA (2000) Evo-devo: the evolution of a new discipline. Nat Rev Genet 1:74–79

    Article  PubMed  CAS  Google Scholar 

  • Reiser L, Sanchez-Baracaldo P, Hake S (2000) Knots in the family tree: evolutionary relationships and functions of knox homeobox genes. Plant Mol Biol 42:151–166

    Article  PubMed  CAS  Google Scholar 

  • Reski R (1998) Development, genetics and molecular biology of mosses. Bot Acta 111:1–15

    CAS  Google Scholar 

  • Sano R, Juarez CM, Hass B, Sakakibara K, Ito M, Banks JO, Hasebe M (2005) KNOX homeobox genes potentially have similar function in both diploid unicellular and multicellular meristems, but not in haploid meristems. Evol Dev 7:69–78

    Article  PubMed  CAS  Google Scholar 

  • Schaefer DG (2002) A new moss genetics: targeted mutagenesis in Physcomitrella patens. Annu Rev Plant Biol 53:477–501

    Article  PubMed  CAS  Google Scholar 

  • Serikawa KA, Mandoli DF (1999) Aaknox1, a kn1-like homeobox gene in Acetabularia acetabulum, undergoes developmentally regulated subcellular localization. Plant Mol Biol 41:785–793

    Article  PubMed  CAS  Google Scholar 

  • Serikawa KA, Martinez-Labora A, Zambryski P (1996) Three knotted1-like homeobox genes in Arabidopsis. Plant Mol Biol 32:673–683

    Article  PubMed  CAS  Google Scholar 

  • Sundås-Larsson A, Svenson M, Liao H, Engström P (1998) A homeobox gene with potential developmental control function in the meristem of the conifer Picea abies. PNAS 95:15118–15122

    Article  PubMed  Google Scholar 

  • Theißen G, Kim JT, Saedler H (1996) Classification and phylogeny of the MADS-box multigene family suggest defined roles of MADS-box gene families in the morphological evolution of eukaryotes. J Mol Evol 43:484–516

    PubMed  Google Scholar 

  • Theißen G, Becker A, Di Rosa A, Kanno A, Kim JT, Münster T, Winter KU, Saedler H (2000) A short history of MADS-box genes in plants. Plant Mol Biol 42:115–149

    Article  PubMed  Google Scholar 

  • Theißen G, Münster T, Henschel K (2001) Why don’t mosses flower? New Phytol 150:1–8

    Article  Google Scholar 

  • US Department of Energy, Joint Genome Institute, Cuming A, Cove D, Nishiyama T, Rensing S, Mishler BD, Hasebe M, Quatrano RS, Reski R (2007) Physcomitrella patens genome sequence v1.1. http://www.genome.jgi-psf.org/Phypa1_1/Phypa1_1.home.html

  • Venglat SP, Dumonceaux T, Rozwadowski K, Parnell L, Babic V, Keller W, Martienssen R, Selvaraj G, Datla R (2002) The homeobox gene BREVIPEDICELLUS is a key regulator of inflorescence architecture in Arabidopsis. PNAS 99:4730–4735

    Article  PubMed  CAS  Google Scholar 

  • Vollbrecht E, Veit B, Sinha N, Hake S (1991) The developmental gene Knotted-1 is a member of a maize homeobox gene family. Nature 350:241–243

    Article  PubMed  CAS  Google Scholar 

  • Vollbrecht E, Reiser L, Hake S (2000) Shoot meristem size is dependent on inbred background and presence of the maize homeobox gene, Knotted-1. Development 127:3161–3172

    PubMed  CAS  Google Scholar 

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Acknowledgments

This study was funded by a Natural Sciences and Engineering Research Council of Canada (NSERC) operating grant awarded to N.W. Ashton and NSERC postgraduate scholarships provided to S.D. Singer (PGSA & B). We wish to thank W. Chapco for invaluable advice concerning statistical analysis and E. Barker for searching the genomes of Physcomitrella patens, Chlamydomonas reinhardtii, Ostreococcus lucimarinus and Ostreococcus tauri.

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Correspondence to N. W. Ashton.

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Communicated by R. Reski.

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Singer, S.D., Ashton, N.W. Revelation of ancestral roles of KNOX genes by a functional analysis of Physcomitrella homologues. Plant Cell Rep 26, 2039–2054 (2007). https://doi.org/10.1007/s00299-007-0409-5

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