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Identification of a minimal cre1 promoter sequence promoting glucose-dependent gene expression in the β-lactam producer Acremonium chrysogenum

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Abstract

The promoter of the cre1 gene, encoding the glucose-dependent regulator CRE1 from the β-lactam producer Acremonium chrysogenum, carries 15 putative CRE1 binding sites (BS1 to BS15). For a detailed analysis, we fused cre1 promoter deletion derivatives with the DsRed reporter gene to perform a comparative gene expression analysis. Plate assays, Northern hybridizations, and spectrofluorometric measurements of DsRed identified the minimal D4 promoter sequence that promoted glucose-dependent expression. Truncated recombinant CRE1 interacted with D4 in electromobility shift analysis and these binding studies were further extended with two oligonucleotides, carrying putative CRE1 binding sites BS14 and BS15. Surface plasmon resonance analysis was performed using BS14 and BS15, along with four derivatives containing 2 or 4 bp substitutions within BS14 and BS15, respectively. Substitutions within BS14 abolished the high affinity interaction with CRE1, while mutations in BS15 only marginally diminished the affinity with CRE1. In vivo analysis of a modified D4 sequence with substitutions in the two binding sites confirmed the in vitro binding results and still promoted glucose-dependent gene expression. Our results will contribute to the construction of versatile expression vectors carrying a minimal cre1 promoter sequence that still confers glucose-dependent induction of gene expression.

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References

  • Ballance DJ (1986) Sequences important for gene expression in filamentous fungi. Yeast 2:229–236

    Article  PubMed  CAS  Google Scholar 

  • Bolle C, Sopory S, Lubberstedt T, Herrmann RG, Oelmuller R (1994) Segments encoding 5′-untranslated leaders of genes for thylakoid proteins contain cis-elements essential for transcription. Plant J 6:513–523

    Article  PubMed  CAS  Google Scholar 

  • Bullock WO, Fernandez JM, Short JM (1987) XL1-Blue: a high efficiency plasmid transforming recA Escherichia coli strain with beta-galactosidase selection. BioTechniques 5:376–378

    CAS  Google Scholar 

  • Cubero B, Scazzocchio C (1994) Two different, adjacent and divergent zinc finger binding sites are necessary for CREA-mediated carbon catabolite repression in the proline gene cluster of Aspergillus nidulans. EMBO J 13:407–415

    PubMed  CAS  Google Scholar 

  • Dowzer CEA, Kelly JM (1989) Cloning of the creA gene form Aspergillus nidulans: a gene involved in carbon catabolite repression. Curr Genet 15:457–459

    Article  PubMed  CAS  Google Scholar 

  • Fei X, Zhao MW, Li YX (2006) Cloning and sequence analysis of a glyceraldehyde-3-phosphate dehydrogenase gene from Ganoderma lucidum. J Microbiol 44:515–522

    PubMed  CAS  Google Scholar 

  • Gancedo JM (1998) Yeast carbon catabolite repression. Microbiol Mol Biol Rev 62:334–361

    PubMed  CAS  Google Scholar 

  • Gurr SJ, Uncles SE, Kinghorn JR (1987) The structure and organization of nuclear genes in filamentous fungi. In: Kinghorn JR (ed) Gene structure in eukaryotic microbes. IRL Press, Oxford, pp 93–139

    Google Scholar 

  • Hart DJ, Speight RE, Cooper MA, Sutherland JD, Blackburn JM (1999) The salt dependence of DNA recognition by NF-kappaB p50: a detailed kinetic analysis of the effects on affinity and specificity. Nucleic Acids Res 27:1063–1069

    Article  PubMed  CAS  Google Scholar 

  • Hortschansky P, Eisendle M, Al-Abdallah Q, Schmidt AD, Bergmann S, Thön M, Kniemeyer O, Abt B, Seeber B, Werner ER, Kato M, Brakhage AA, Haas H (2007) Interaction of HapX with the CCAAT-binding complex—a novel mechanism of gene regulation by iron. EMBO J 26:3157–3168

    Article  PubMed  CAS  Google Scholar 

  • Ilmén M, Thrane C, Penttilä M (1996) The glucose repressor gene cre1 of Trichoderma: isolation and expression of a full-length and a truncated mutant form. Mol Gen Genet 251:451–460

    PubMed  Google Scholar 

  • Janus D, Hoff B, Hofmann E, Kück U (2007) An efficient fungal RNA-silencing system using the DsRed reporter gene. Appl Environ Microbiol 73:962–970

    Article  PubMed  CAS  Google Scholar 

  • Jekosch K, Kück U (2000a) Glucose dependent transcriptional expression of the cre1 gene in Acremonium chrysogenum strains showing different levels of cephalosporin C production. Curr Genet 37:388–395

    Article  PubMed  CAS  Google Scholar 

  • Jekosch K, Kück U (2000b) Loss of glucose repression in an Acremonium chrysogenum beta-lactam producer strain and its restoration by multiple copies of the cre1 gene. Appl Microbiol Biotechnol 54:556–563

    Article  PubMed  CAS  Google Scholar 

  • Kapoor M, Curle CA, Runham C (1995) The hsp70 gene family of Neurospora crassa: cloning, sequence analysis, expression, and genetic mapping of the major stress-inducible member. J Bacteriol 177:212–221

    PubMed  CAS  Google Scholar 

  • Kulmburg P, Mathieu M, Dowzer C, Kelly J, Felenbok B (1993) Specific binding sites in the alcR and alcA promoters of the ethanol regulon for the CREA repressor mediating carbon catabolite repression in Aspergillus nidulans. Mol Microbiol 7:847–857

    Article  PubMed  CAS  Google Scholar 

  • Mach RL, Strauss J, Zeilinger S, Schindler M, Kubicek CP (1996) Carbon catabolite repression of xylanase I (xyn1) gene expression in Trichoderma reesei. Mol Microbiol 21:1273–1281

    Article  PubMed  CAS  Google Scholar 

  • Martín JF, Casqueiro J, Kosalková K, Marcos AT, Gutiérrez S (1999) Penicillin and cephalosporin biosynthesis: mechanism of carbon catabolite regulation of penicillin production. Antonie Van Leeuwenhoek 75:21–31

    Article  PubMed  Google Scholar 

  • Mathieu M, Fillinger S, Felenbok B (2000) In vivo studies of upstream regulatory cis-acting elements of the alcR gene encoding the transactivator of the ethanol regulon in Aspergillus nidulans. Mol Microbiol 36:123–131

    Article  PubMed  CAS  Google Scholar 

  • Myszka DG, Jonsen MD, Graves BJ (1998) Equilibrium analysis of high affinity interactions using BIACORE. Anal Biochem 265:326–330

    Article  PubMed  CAS  Google Scholar 

  • Neveu B, Belzile F, Bélanger RR (2007) Cloning of the glyceraldehyde-3-phosphate dehydrogenase gene from Pseudozyma flocculosa and functionality of its promoter in two Pseudozyma species. Antonie Van Leeuwenhoek 92(2):245–255

    Article  PubMed  CAS  Google Scholar 

  • Punt PJ, Dingemanse MA, Kuyvenhoven A, Soede RD, Pouwels PH, van den Hondel CA (1990) Functional elements in the promoter region of the Aspergillus nidulans gpdA gene encoding glyceraldehyde-3-phosphate dehydrogenase. Gene 93:101–109

    Article  PubMed  CAS  Google Scholar 

  • Radzio R, Kück U (1997) Efficient synthesis of the blood-coagulation inhibitor hirudin in the filamentous fungus Acremonium chrysogenum. Appl Microbiol Biotechnol 48:58–65

    Article  PubMed  CAS  Google Scholar 

  • Rauscher R, Wurleitner E, Wacenovsky C, Aro N, Stricker AR, Zeilinger S, Kubicek CP, Penttilä M, Mach RL (2006) Transcriptional regulation of xyn1, encoding xylanase I, in Hypocrea jecorina. Eukaryot Cell 5:447–456

    Article  PubMed  CAS  Google Scholar 

  • Ronne H (1995) Glucose repression in fungi. Trends Genet 11:12–17

    Article  PubMed  CAS  Google Scholar 

  • Ruijter GJ, Visser J (1997) Carbon repression in Aspergilli. FEMS Microbiol Lett 151:103–114

    Article  PubMed  CAS  Google Scholar 

  • Sambrook J, Russell DW (eds) (2001) Molecular cloning. A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Habor, pp 7.31–7.44

  • Schaufler LE, Klevit RE (2003) Mechanism of DNA binding by the ADR1 zinc finger transcription factor as determined by SPR. J Mol Biol 329:931–939

    Article  PubMed  CAS  Google Scholar 

  • Schmitt EK, Hoff B, Kück U (2004a) Regulation of cephalosporin biosynthesis. In: Brakhage AA (ed) Adv Biochem Engin/Biotechnol. Springer, Berlin, pp 1–43

    Google Scholar 

  • Schmitt EK, Bunse A, Janus D, Hoff B, Friedlin E, Kürnsteiner H, Kück U (2004b) Winged helix transcription factor CPCR1 is involved in regulation of beta-lactam biosynthesis in the fungus Acremonium chrysogenum. Eukaryot Cell 3:121–134

    Article  PubMed  CAS  Google Scholar 

  • Shevchuk NA, Bryksin AV, Nusinovich YA, Cabello FC, Sutherland M, Ladisch S (2004) Construction of long DNA molecules using long PCR-based fusion of several fragments simultaneously. Nucleic Acids Res 32:e19

    Article  PubMed  Google Scholar 

  • Shi C, Kaminskyj S, Caldwell S, Loewen MC (2007) A role for a complex between activated G protein-coupled receptors in yeast cellular mating. Proc Natl Acad Sci USA 104:5395–5400

    Article  PubMed  CAS  Google Scholar 

  • Sirand-Pugnet P, Santos C, Labarere J (2003) The Aa-Pri4 gene, specifically expressed during fruiting initiation in the Agrocybe aegerita complex, contains an unusual CT-rich leader intron within the 5′ uncoding region. Curr Genet 44:124–131

    Article  PubMed  CAS  Google Scholar 

  • Strauss J, Horvath HK, Abdallah BM, Kindermann J, Mach RL, Kubicek CP (1999) The function of CreA, the carbon catabolite repressor of Aspergillus nidulans, is regulated at the transcriptional and post-transcriptional level. Mol Microbiol 32:169–178

    Article  PubMed  CAS  Google Scholar 

  • Studier FW (2005) Protein production by auto-induction in high density shaking cultures. Protein Expr Purif 41:207–234

    Article  PubMed  CAS  Google Scholar 

  • van Hartingsveldt W, Mattern IE, van Zeijl CM, Pouwels PH, van den Hondel CA (1987) Development of a homologous transformation system for Aspergillus niger based on the pyrG gene. Mol Gen Genet 206:71–75

    Article  PubMed  Google Scholar 

  • Walz M, Kück U (1991) Polymorphic karyotypes in related Acremonium strains. Curr Genet 19:73–76

    Article  PubMed  CAS  Google Scholar 

  • Walz M, Kück U (1993) Targeted integration into the Acremonium chrysogenum genome: disruption of the pcbC gene. Curr Genet 24:421–427

    Article  PubMed  CAS  Google Scholar 

  • Ward M, Turner G (1986) The ATP synthase subunit 9 gene of Aspergillus nidulans: sequence and transcription. Mol Gen Genet 205:331–338

    Article  PubMed  CAS  Google Scholar 

  • Ward M, Wilson LJ, Carmona CL, Turner G (1988) The oliC3 gene of Aspergillus niger: isolation, sequence and use as a selectable marker for transformation. Curr Genet 14:37–42

    Article  PubMed  CAS  Google Scholar 

  • Warner JB, Lolkema JS (2003) CcpA-dependent carbon catabolite repression in bacteria. Microbiol Mol Biol Rev 67:475–490

    Article  PubMed  CAS  Google Scholar 

  • Yamazaki T, Hasebe T, Kajiwara S, Shishido K (2000) Structure and function of a pyrimidine/purine-biased sequence from the 5′-flanking region of the basidiomycete Lentinus edodes gene priA. Mol Gen Genet 263:262–270

    Article  PubMed  CAS  Google Scholar 

  • Zeilinger S, Schmoll M, Pail M, Mach RL, Kubicek CP (2003) Nucleosome transactions on the Hypocrea jecorina (Trichoderma reesei) cellulase promoter cbh2 associated with cellulase induction. Mol Genet Genomics 270:46–55

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

We thank Kerstin Kalkreuter (Bochum), Sylke Fricke (Jena), and Ingeborg Godehardt (Bochum) for excellent technical assistance, Prof. Eckhard Hofmann (Bochum) for the use of the JASCO spectrofluorometer, Dr. E. Friedlin and Dr. H. Kürnsteiner (Kundl) for fruitful discussions, and Prof. A. Brakhage (Hans-Knöll Institute, Jena) for institutional support. This work was funded by Sandoz GmbH (Austria, Kundl).

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Correspondence to Ulrich Kück.

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Communicated by K. Breunig.

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294_2007_164_MOESM1_ESM.doc

Supplementary Table 1: Data from spectrofluorometric measurements to determine the DsRed amount (ng DsRed/µg protein) in crude protein extracts from different low (lc) and multi copy (mc) transformants carrying promoter deletion derivatives as indicated. (DOC 38 kb)

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Janus, D., Hortschansky, P. & Kück, U. Identification of a minimal cre1 promoter sequence promoting glucose-dependent gene expression in the β-lactam producer Acremonium chrysogenum . Curr Genet 53, 35–48 (2008). https://doi.org/10.1007/s00294-007-0164-8

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