Abstract
Microsatellites, or simple repetitive sequences, are abundant in eukaryotic genomes and in the mitochondrial genome of Saccharomyces cerevisiae. These sequences alter at rates significantly higher than non-repetitive sequences of comparable size. The stability of a mitochondrial microsatellite is nearly 100-fold greater in diploid yeast cells than in isogenic haploid cells. We were able to demonstrate that this effect is likely due to ploidy alone, rather than mating-type-specific gene expression. In addition, we demonstrated that amino acid starvation affects the organization of the mitochondrial DNA and its segregation into the bud. We also tested the effect of amino acid starvation on the copy number and the mutation rate of mitochondrial DNA in both haploid and diploid yeast cells. Yeast cells grown in rich medium have a lower mitochondrial DNA content than cells starved for amino acids and have a correspondingly higher mutation rate for both frameshift mutations and point mutations in mitochondrial DNA. These effects appear to be dependent on the mitochondrial nucleoid-associated protein Ilv5p.
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Baladron V, Ufano S, Duenas E, Martin-Cuadrado AB, Rey F del, Vazquez de Aldana CR (2002) Eng1p, an endo-1,3-β-glucanase localized at the daughter side of the septum, is involved in cell separation in Saccharomyces cerevisiae. Eukaryot Cell 1:774–786
Bateman JM, Perlman PS, Butow RA (2002) Mutational bisection of the mitochondrial DNA stability and amino acid biosynthetic functions of Ilv5p of budding yeast. Genetics 161:1043–1052
Dujon B (1981) Mitochondrial genetics and functions. In: Strathern JN, Jones EW, Broach JR (eds) Molecular biology of the yeast Saccharomyces: life cycle and inheritance. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., pp 505–635
Galitski T, Saldanha AJ, Styles CA, Lander ES, Fink CR (1999) Ploidy regulation of gene expression. Science 285:251–254
Grimes GW, Mahler HR, Perlman PS (1974) Nuclear gene dosage effects on mitochondrial mass and DNA. J Cell Biol 61:565–574
Herskowitz I, Jensen RE (1991) Putting the HO gene to work: practical uses for mating-type switching. Methods Enzymol 194:132–146
Hinnebusch AG (1992) General and pathway-specific regulatory mechanisms controlling the synthesis of amino acid biosynthetic enzymes in Saccharomyces cerevisiae. In: Jones EW, Pringle JR, Broach JR (eds) The molecular and cellular biology of the yeast Saccharomyces. Cold Spring Harbor Press, Plainview, N.Y., pp 319–414
Hoffman DS, Winston F (1987) A ten minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of E. coli. Gene 57:267–272
Jiang JC, Jaruga E, Repnevskaya MV, Jazwinski SM (2000) An intervention resembling caloric restriction prologs life span and retards aging in yeast. FASEB J 14:2135–2137
Knight SAB, Labbe S, Kwon LF, Kosman DJ, Thiele DJ (1996) A widespread transposable element masks expression of a yeast copper transport gene. Genes Dev 10:1917–1929
Lea DE, Coulson CA (1949) The distribution of the number of mutants in bacterial populations. J Genet 49:264–285
Lin S-J, Kaeberlein M, Andalis AA, Sturtz LA, Defossez PA, et al (2002) Calorie restriction extends Saccharomyces cerevisiae lifespan by increasing respiration. Nature 418:344–348
MacAlpine DM, Perlman PS, Butow RA (2000) The numbers of individual mitochondrial DNA molecules and mitochondrial DNA nucleoids in yeast are co-regulated by the general amino acid control pathway. EMBO J 19:767–775
Masoro EJ (1995) Dietary restriction. Exp Gerontol 30:291–298
Mortimer RK, Johnston JR (1959) Life span of individual yeast cells. Nature 183:1751–1752
Natarajan K, Meyer MR, Jackson BM, Slade D, Roberts C, et al (2001) Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast. Mol Cell Biol 21:4347–4368
Sarkar PS, Chang H-C, Boudi FB, Reddy S (1998) CTG repeats show bimodal amplification in E. coli. Cell 95:531–540
Scheffler I (1999) Mitochondria. Wiley–Liss, New York
Sherman F (1991) Getting started with yeast. In: Guthrie C, Fink GR (eds) Guide to yeast genetics and molecular biology. Academic Press, San Diego, Calif., pp 3–37
Sia EA, Butler CA, Dominska M, Greenwell P, Fox TD, et al (2000) Analysis of microsatellite mutations in the mitochondrial DNA of Saccharomyces cerevisiae. Proc Natl Acad Sci USA 97:250–255
Sikorski RS, Hieter P (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19–27
Spode I, Maiwald D, Hollenberg CP, Suckow M (2002) ATF/CREB sites present in sub-telomeric regions of Saccharomyces cerevisiae chromosomes are part of promoters and act as UAS/URS of highly conserved COS genes. J Mol Biol 319:407–420
Steele DF, Butler CA, Fox TD (1996) Expression of a recoded nuclear gene inserted into yeast mitochondrial DNA is limited by mRNA-specific translational activation. Proc Natl Acad Sci USA 93:5253–5257
Thorsness PE, Fox TD (1993) Nuclear mutations in Saccharomyces cerevisiae that affect the escape of DNA from mitochondria to the nucleus. Genetics 134:21–28
Weindruch R, Sohal RS (1997) Caloric intake and aging. N Engl J Med 337:986–994
Wierdl M, Greene CN, Datta A, Jinks-Robertson S, Petes TD (1996) Destabilization of simple repetitive DNA sequences by transcription in yeast. Genetics 143:713–721
Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, Andre B, Bangham R, Benito R, Boeke JD, Bussey H, Chu AM, Connelly C, et al (1999) Functional characterization of the Saccharomyces cerevisiae genome by gene deletion and parallel analysis. Science 285:901–906
Zelenaya-Troitskaya O, Perlman PS Butow RA (1995) An enzyme in yeast mitochondria that catalyzes a step in branched-chain amino acid biosynthesis also functions in mitochondrial DNA stability. EMBO J 14:3268–3276
Acknowledgements
This research was supported by National Institutes of Health grant GM63626–01. E.A.S. is a recipient of a Burroughs Wellcome Fund Career Award in the Biomedical Sciences. Our special thanks go to Hiram Lyon for assistance with microscopy. Purchase of the Leica SP-2 confocal microscope was supported by Shared Instrumentation awards from the National Science Foundation (9512886) and the National Institutes of Health (S10 RR11358) and by matching funds from the University of Rochester.
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Sia, R.A.L., Urbonas, B.L. & Sia, E.A. Effects of ploidy, growth conditions and the mitochondrial nucleoid-associated protein Ilv5p on the rate of mutation of mitochondrial DNA in Saccharomyces cerevisiae . Curr Genet 44, 26–37 (2003). https://doi.org/10.1007/s00294-003-0420-5
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DOI: https://doi.org/10.1007/s00294-003-0420-5