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Diversity and Distribution of Methanogenic Community Between Two Typical Alpine Ecosystems on the Qinghai–Tibetan Plateau

Abstract

Alpine permafrost regions are important sources of biogenic CH4 and methanogens play an important role in the methane-producing process. The alpine permafrost on the Qinghai–Tibetan plateau comprises about one-sixth of China’s land area, and there are various types of alpine ecosystems. However, the methanogenic communities in the typical alpine ecosystems are poorly understood. In this study, the active layers and permafrost layers of the natural ecosystem of alpine grassland (DZ2-1) and alpine swamp meadow (DZ2-5) were selected to investigate the diversity and abundance of methanogenic communities. Methanobacterium (63.65%) are overwhelmingly dominant in the active layer of the alpine grassland (DZ2-1A). ZC-I cluster (26.13%), RC-I cluster (19.56%), and Methanobacterium (15.02%) are the dominant groups in the permafrost layer of the alpine grassland (DZ2-1P). Methanosaeta (32.92%), Fen cluster (29.59%), Methanosarcina (16.33%), and Methanobacterium (13.95%) are the dominant groups in the active layer of the alpine swamp meadow (DZ2-5A), whereas the Fen cluster (50.85%), ZC-I cluster (27.63%), and RC-I cluster (14.15%) are relatively abundant in the permafrost layer of the alpine swamp meadow (DZ2-5P). qPCR data showed that the abundance of methanogens was higher in the natural ecosystem of alpine swamp meadow than in alpine grassland. We found that the community characteristics of methanogens were related to environmental factors. Pearson correlation analyses indicated that the relative abundance of Methanobacterium had a significantly positive correlation with hydrogen concentration (P < 0.01), while the relative abundances of Methanosaeta and Methanosarcina were positively correlated with acetate concentration (P < 0.05). This study will help us to understand the methanogenic communities and their surrounding environments in alpine ecosystems.

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References

  1. Barbier BA, Dziduch I, Liebner S, Ganzert L, Lantuit H, Pollard W, Wagner D (2012) Methane-cycling communities in a permafrost-affected soil on Herschel Island, Western Canadian Arctic: active layer profiling of mcrA and pmoA genes. FEMS Microbiol Ecol 82(2):287–302. https://doi.org/10.1111/j.1574-6941.2012.01332.x

    Article  PubMed  CAS  Google Scholar 

  2. Bodelier PLE, Dedysh SN (2013) Microbiology of wetlands. Front Microbiol 4:1–4. https://doi.org/10.3389/fmicb.2013.00079

    Article  Google Scholar 

  3. Boone D, Castenholz R, Garrity G (2001) Bergey's manual of systematic bacteriology. Volume 1: the archaea and the deeply branching and phototrophic bacteria. Springer, New York

    Book  Google Scholar 

  4. Chen H, Wu N, Gao Y, Wang Y, Luo P, Tian J (2009) Spatial variations on methane emissions from Zoige alpine wetlands of Southwest China. Sci Total Environ 407(3):1097–1104. https://doi.org/10.1016/j.scitotenv.2008.10.038

    Article  PubMed  CAS  Google Scholar 

  5. Christensen TR, Michelsen A, Jonasson S, Schmidt IK (1997) Carbon dioxide and methane exchange of a subarctic heath in response to climate change related environmental manipulations. Oikos 79(1):34–44

    Article  CAS  Google Scholar 

  6. Conrad R, Klose M (2006) Dynamics of the methanogenic archaeal community in anoxic rice soil upon addition of straw. Eur J Soil Sci 57(4):476–484. https://doi.org/10.1111/j.1365-2389.2006.00791.x

    Article  Google Scholar 

  7. Cui H, Su X, Chen F, Wei S, Chen S, Wang J (2016) Vertical distribution of archaeal communities in cold seep sediments from the Jiulong methane reef area in the South China Sea. Biosci J 32(4):1059–1068

    Article  Google Scholar 

  8. Cui H, Su X, Wei S, Zhu Y, Lu Z, Wang Y, Li Y, Liu H, Zhang S, Pang S (2018) Comparative analyses of methanogenic and methanotrophic communities between two different water regimes in controlled wetlands on the Qinghai-Tibetan plateau. China. Curr Microbiol 75(4):484–491. https://doi.org/10.1007/s00284-017-1407-7

    Article  PubMed  CAS  Google Scholar 

  9. Dobinski W (2011) Permafrost. Earth Sci Rev 108(3–4):158–169

    Article  Google Scholar 

  10. Galand PE, Saarnio S, Fritze H, Yrjälä K (2002) Depth related diversity of methanogen archaea in Finnish oligotrophic fen. FEMS Microbiol Ecol 42(3):441–449. https://doi.org/10.1111/j.1574-6941.2002.tb01033.x

    Article  PubMed  CAS  Google Scholar 

  11. Hu Q, Zhu L, Xing R, Yao B, Hu B (2011) Methane emission from a Carex-dominated wetland in Poyang Lake. Acta Ecol Sin 31:4851–4857 (In Chinese)

    CAS  Google Scholar 

  12. Huttunen JT, Nykänen H, Turunen J, Martikainen PJ (2003) Methane emissions from natural peatlands in the northern boreal zone in Finland, Fennoscandia. Atmos Environ 37(1):147–151. https://doi.org/10.1016/S1352-2310(02)00771-9

    Article  CAS  Google Scholar 

  13. Jiang N, Wang Y, Dong X (2010) Methanol as the primary methanogenic and acetogenic precursor in the cold Zoige wetland at Tibetan plateau. Microb Ecol 60(1):206–213. https://doi.org/10.1007/s00248-009-9602-0

    Article  PubMed  CAS  Google Scholar 

  14. Jiao L, Su X, Wang Y, Jiang H, Zhang Y, Chen F (2015) Microbial diversity in the hydrate-containing and-free surface sediments in the Shenhu area, South China Sea. Geosci Front 6(4):627–633. https://doi.org/10.1016/j.gsf.2014.04.007

    Article  Google Scholar 

  15. Jin H, Li S, Wang S, Zhao L (2000) Impact of climatic change on permafrost and cold regions environment in China. Acta Geogr Sin 55:161–173 (In Chinese)

    Google Scholar 

  16. Jin H, Wu J, Cheng G, Tomoko N, Sun G (1999) Methane emissions from wetlands on the Qinghai-Tibet plateau. Chin Sci Bull 44:2282–2286

    Article  CAS  Google Scholar 

  17. Kao-Kniffin J, Freyre DS, Balser TC (2010) Methane dynamics across wetland plant species. Aquat Bot 93(2):107–113. https://doi.org/10.1016/j.aquabot.2010.03.009

    Article  CAS  Google Scholar 

  18. Kettunen A, Kaitala V, Lehtinen A, Lohila A, Alm J, Silvola J, Martikainen PJ (1999) Methane production and oxidation potentials in relation to water table fluctuations in two boreal mires. Soil Biol Biochem 31(12):1741–1749. https://doi.org/10.1016/S0038-0717(99)00093-0

    Article  CAS  Google Scholar 

  19. Kotsyurbenko OR, Chin KJ, Glagolev MV, Stubner S, Simankova MV, Nozhevnikova AN, Conrad R (2004) Acetoclastic and hydrogenotrophic methane production and methanogenic populations in an acidic West-Siberian peat bog. Environ Microbiol 6(11):1159–1173. https://doi.org/10.1111/j.1462-2920.2004.00634.x

    Article  PubMed  CAS  Google Scholar 

  20. Liu F, Conrad R (2010) Thermoanaerobacteriaceae oxidize acetate in methanogenic rice field soil at 50 °C. Environ Microbiol 12(8):2341–2354. https://doi.org/10.1111/j.1462-2920.2010.02289.x

    Article  PubMed  CAS  Google Scholar 

  21. Liu Y, Whitman WB (2008) Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea. Ann NY Acad Sci 1125(1):171–189. https://doi.org/10.1196/annals.1419.019

    Article  PubMed  CAS  Google Scholar 

  22. Luton PE, Wayne JM, Sharp RJ, Riley PW (2002) The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill. Microbiology 148(11):3521–3530

    Article  CAS  Google Scholar 

  23. Mackelprang R, Waldrop MP, DeAngelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK (2011) Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature 480(7377):368–371. https://doi.org/10.1038/nature10576

    Article  PubMed  CAS  Google Scholar 

  24. McCalley CK, Woodcroroft BJ, Hodgkins SB, Wehr RA, Kim EH, Mondav R, Crill PM, Chanton JP, Rich VI, Tyson GW, Saleska SR (2014) Methane dynamics regulated by microbial community response to permafrost thaw. Nature 514(7523):478–481. https://doi.org/10.1038/nature13798

    Article  PubMed  CAS  Google Scholar 

  25. McGuire AD, Anderson LG, Christensen TR, Dallimore S, Guo L, Hayes DL, Heimann M, Lorenson TD, Macdonald RW, Roulet N (2009) Sensitivity of the carbon cycle in the Arctic to climate change. Ecol Monogr 79(4):523–555. https://doi.org/10.1890/08-2025.1

    Article  Google Scholar 

  26. Metje M, Frenzel P (2005) Effect of temperature on anaerobic ethanol oxidation and methanogenesis in acidic peat from a northern wetland. Appl Environ Microbiol 71(12):8191–8200

    Article  CAS  Google Scholar 

  27. Peng J, Lü Z, Rui J, Lu Y (2008) Dynamics of the methanogenic archaeal community during plant residue decomposition in an anoxic rice field soil. Appl Environ Microbiol 74(9):2894–2901

    Article  CAS  Google Scholar 

  28. Sakai S, Imachi H, Sekiguchi Y, Ohashi A, Harada H, Kamagata Y (2007) Isolation of key methanogens for global methane emission from rice paddy fields: a novel isolate affiliated with the clone cluster Rice Cluster I. Appl Environ Microbiol 73(13):4326–4331

    Article  CAS  Google Scholar 

  29. Steinberg LM, Regan JM (2008) Phylogenetic comparison of the methanogenic communities from an acidic, oligotrophic fen and an anaerobic digester treating municipal wastewater sludge. Appl Environ Microbiol 74(21):6663–6671. https://doi.org/10.1128/AEM.00553-08

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  30. Thauer RK (1998) Biochemistry of methanogenesis: a tribute to Marjory Stephenson: 1998 Marjory Stephenson Prize Lecture. Microbiology 144:2377–2406

    Article  CAS  Google Scholar 

  31. Wagner D, Lipski A, Embacher A, Gattinger A (2005) Methane fluxes in permafrost habitats of the Lena Delta: effects of microbial community structure and organic matter quality. Environ Microbiol 7(10):1582–1592. https://doi.org/10.1111/j.1462-2920.2005.00849.x

    Article  PubMed  CAS  Google Scholar 

  32. Wang C, Zhao X, Zi H, Hu L, Ade L, Wang G, Lerdau M (2017) The effect of simulated warming on root dynamics and soil microbial community in an alpine meadow of the Qinghai-Tibet plateau. Appl Soil Ecol 116:30–41. https://doi.org/10.1016/j.apsoil.2017.03.005

    Article  Google Scholar 

  33. Wei S, Cui H, He H, Hu F, Su X, Zhu Y (2014) Diversity and distribution of archaea community along a stratigraphic permafrost profile from Qinghai-Tibetan plateau, China. Archaea. https://doi.org/10.1155/2014/240817

    Article  PubMed  PubMed Central  Google Scholar 

  34. Wei S, Cui H, Zhu Y, Lu Z, Pang S, Zhang S, Dong H, Su X (2018) Shifts of methanogenic communities in response to permafrost thaw results in rising methane emissions and soil property changes. Extremophiles 22(3):447–459. https://doi.org/10.1007/s00792-018-1007-x

    Article  PubMed  CAS  Google Scholar 

  35. Xu H, Wang X, Zhang X (2016) Alpine grasslands response to climatic factors and anthropogenic activities on the Tibetan plateau from 2000 to 2012. Ecol Eng 92:251–259. https://doi.org/10.1016/j.ecoleng.2016.04.005

    Article  Google Scholar 

  36. Yang Z, Ou YH, Xu X, Zhao L, Song M, Zhou C (2010) Effects of permafrost degradation on ecosystems. Acta Ecol Sin 30(1):33–39. https://doi.org/10.1016/j.chnaes.2009.12.006

    Article  Google Scholar 

  37. Yergeau E, Hogues H, Whyte LG, Greer CW (2010) The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses. ISME J 4(9):1206–1214. https://doi.org/10.1038/ismej.2010.41

    Article  PubMed  CAS  Google Scholar 

  38. Yrjälä K, Tuomivirta T, Juottonen H, Putkinen A, Lappi K, Tuittila ES, Penttilä T, Minkkinen K, Laine J, Peltoniemi K (2011) CH4 production and oxidation processes in a boreal fen ecosystem after long-term water table drawdown. Glob Change Biol 17(3):1311–1320. https://doi.org/10.1111/j.1365-2486.2010.02290.x

    Article  Google Scholar 

  39. Zhang G, Tian J, Jiang N, Guo X, Wang Y, Dong X (2008) Methanogen community in Zoige wetland of Tibetan plateau and phenotypic characterization of a dominant uncultured methanogen cluster ZC-I. Environ Microbiol 10(7):1850–1860. https://doi.org/10.1111/j.1462-2920.2008.01606.x

    Article  PubMed  CAS  Google Scholar 

  40. Zhang T, Barry RG, Knowles K, Heginbottom JA, Brown J (2008) Statistic and characteristics of permafrost and ground-ice distribution in the Northern Hemisphere. Polar Geogr 31(1–2):47–68. https://doi.org/10.1080/10889370802175895

    Article  Google Scholar 

  41. Zhang Y, Wang G, Wang Y (2010) Response of biomass spatial pattern of alpine vegetation to climate change in permafrost region of the Qinghai-Tibet plateau, China. J Mt Sci 7(4):301–314. https://doi.org/10.1007/s11629-010-2011-5

    Article  Google Scholar 

  42. Zimov SA, Schuur EAG, Chapin FS (2006) Permafrost and the global carbon budget. Science 312(5780):1612–1613

    Article  CAS  Google Scholar 

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Acknowledgements

The research work has gained a lot of convenience from the Muli Field Scientific Observation and Research Station for Qinghai–Tibet plateau Gas Hydrate, China Geological Survey. This work was supported by Funds of China Geological Survey (Grant Nos. GZH201400308, DD20190072, and DD20190102).

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Correspondence to Xin Su.

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Wang, Y., Cui, H., Su, X. et al. Diversity and Distribution of Methanogenic Community Between Two Typical Alpine Ecosystems on the Qinghai–Tibetan Plateau. Curr Microbiol 77, 1061–1069 (2020). https://doi.org/10.1007/s00284-020-01891-x

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