An DS, Kim SG, Ten LN, Cho CH (2009) Pedobacter daechungensis sp. nov., from freshwater lake sediment in South Korea. Int J Syst Evol Microbiol 59:69–72
Article
CAS
PubMed
Google Scholar
Asker D, Beppu T, Ueda K (2008) Nubsella zeaxanthinifaciens gen. nov., sp. nov., a zeaxanthin-producing bacterium of the family Sphingobacteriaceae isolated from freshwater. Int J Syst Evol Microbiol 58:601–606
Article
CAS
PubMed
Google Scholar
Baik KS, Park YD, Kim MS, Park SC, Moon EY, Rhee MS, Choi JH, Seong CN (2007) Pedobacter koreensis sp. nov., isolated from fresh water. Int J Syst Evol Microbiol 57:2079–2083
Article
CAS
PubMed
Google Scholar
Bernardet JF, Nakagawa Y, Holmes B (2002) Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52:1049–1070
CAS
PubMed
Google Scholar
Buck JD (1982) Nonstaining (KOH) method for determination of gram reactions of marine bacteria. Appl Environ Microbiol 44:992–993
CAS
PubMed
PubMed Central
Google Scholar
Collins MD, Pirouz T, Goodfellow M, Minnikin DE (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230
Article
CAS
PubMed
Google Scholar
Felsenstein J (1981)) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376
Article
CAS
PubMed
Google Scholar
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
Article
PubMed
Google Scholar
Gallego V, Garcıà MT, Ventosa A (2006) Pedobacter aquatilis sp. nov., isolated from drinking water, and emended description of the genus Pedobacter. Int J Syst Evol Microbiol 56:1853–1858
Article
CAS
PubMed
Google Scholar
Gordon NS, Valenzuela A, Adams SM, Ramsey PW, Pollock JL, Holben WE, Gannon JE (2009) Pedobacter nyackensis sp. nov., Pedobacter alluvionis sp. nov. and Pedobacter borealis sp. nov., isolated from Montana flood-plain sediment and forest soil. Int J Syst Evol Microbiol 59:1720–1726
Article
CAS
PubMed
Google Scholar
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
CAS
Google Scholar
Hoang VA, Kim YJ, Nguyen NL, Min JW, Yang DC (2013) Pedobacter ginsengiterrae sp. nov., isolated from soil of a ginseng field. Int J Syst Evol Microbiol 63:1273–1279
Article
CAS
PubMed
Google Scholar
Hwang CY, Choi DH, Cho BC (2006) Pedobacter roseus sp. nov., isolated from a hypertrophic pond, and emended description of the genus Pedobacter. Int J Syst Evol Microbiol 56:1831–1836
Article
CAS
PubMed
Google Scholar
Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721
Article
CAS
PubMed
Google Scholar
Kook MC, Park YJ, Yi TH (2014) Pedobacter jejuensis sp. nov., isolated from soil of a pine grove, and emended description of the genus Pedobacter. Int J Syst Evol Microbiol 64:1789–1794
Article
CAS
PubMed
Google Scholar
Lane DL (1991) 16S/23S rRNA sequencing. In: Stackebrandt ER, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, Chichester, pp 115–175
Google Scholar
Li R, Zheng JW, Wang R, Song Y, Chen Q, Yang X, Li SP, Jiang JD (2010) Biochemical degradation pathway of dimethoate by Paracoccus sp. Lgjj-3 isolated from treatment wastewater. Int J Biodeterior Biodegrad 64:51–57
Article
CAS
Google Scholar
Mandel M, Marmur J (1968) Use of ultraviolet absorbance-temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B:195–206
Article
Google Scholar
Mccarthy AJ, Cross T (1984) A taxonomic study of Thermomonospora and other monosporic Actinomycetes. Microbiol-SGM 130:5–25
Article
Google Scholar
Muurholm S, Cousin S, Päuker O, Brambilla E, Stackebrandt E (2007) Pedobacter duraquae sp. nov. Pedobacter westerhofensis sp. nov., Pedobacter metabolipauper sp. nov., Pedobacter hartonius sp. nov. and Pedobacter steynii sp. nov., isolated from a hard-water rivulet. Int J Syst Evol Microbiol 57:2221–2227
Article
CAS
PubMed
Google Scholar
Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor
Google Scholar
Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. Newark, DE: MIDI
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
CAS
PubMed
Google Scholar
Steyn PL, Segers P, Vancanneyt M, Sandra P, Kersters K, Joubert JJ (1998) Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov. Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov. Int J Syst Bacteriol 48:165–177
Article
CAS
PubMed
Google Scholar
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using Maximum Likelihood, evolutionary Distance, and Maximum Parsimony methods. Mol Biol Evo 28:2731–2739
Article
CAS
Google Scholar
Ten LN, Liu QM, Im WT, Lee M, Yang DC, Lee ST (2006) Pedobacter ginsengisoli sp. nov., a DNase-producing bacterium isolated from soil of a ginseng field in South Korea. Int J Syst Evol Microbiol 56:2565–2570
Article
CAS
PubMed
Google Scholar
Tindall BJ (1990) A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13:128–130
Article
CAS
Google Scholar
Tindall BJ (1990) Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66:199–202
Article
CAS
Google Scholar
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882
Article
CAS
PubMed
PubMed Central
Google Scholar
Roh SW, Quan ZX, Nam YD, Chang HW, Kim KH, Kim MK, Im WT, Jin L, Kim SH (2008) Pedobacter agri sp. nov., from soil. Int J Syst Evol Microbiol 58:1640–1643
Article
CAS
PubMed
Google Scholar
Oh HW, Kim BC, Park DS, Jeong WJ, Kim H, Lee KH, Kim SU (2013) Pedobacter luteus sp. nov., isolated from soil. Int J Syst Evol Microbiol 63:1304–1310
Article
CAS
PubMed
Google Scholar
Yang DJ, Hong JK (2017) Pedobacter solisilvae sp. nov., isolated from forest soil. Int J Syst Evol Microbiol 67:4814–4819
Article
CAS
PubMed
Google Scholar
Yang JE, Son HM, Lee JM, Shin HS, Park SY, Lee DG, Kook MC, Yi TH (2013) Pedobacter ginsenosidimutans sp. nov., with ginsenoside-converting activity. Int J Syst Evol Microbiol 63:4396–4401
Article
CAS
PubMed
Google Scholar
Zhang DC, Schinner F, Margesin R (2010) Pedobacter bauzanensis sp. nov., isolated from soil. Int J Syst Evol Microbiol 60:2592–2595
Article
CAS
PubMed
Google Scholar
Zhang B, Liu ZQ, Zheng YG (2017) Pedobacter quisquiliarum sp. nov., isolated from activated sludge. Int J Syst Evol Microbiol. https://doi.org/10.1099/ijsem.0.002531
Article
PubMed
Google Scholar
Zhang H, Zhang J, Song M, Cheng MG, Wu YD, Guo SH, Li Q, Hong Q, Huang X (2015) Pedobacter nanyangensis sp. nov., isolated from herbicide-contaminated soil. Int J Syst Evol Microbiol 65:3517–3521
Article
CAS
PubMed
Google Scholar
Zhou Z, Jiang F, Wang S, Peng F, Dai J, Li W, Fang C (2012) Pedobacter arcticus sp. nov., a facultative psychrophile isolated from Arctic soil, and emended descriptions of the genus Pedobacter, Pedobacter heparinus, Pedobacter daechungensis, Pedobacter terricola, Pedobacter glucosidilyticus and Pedobacter lentus. Int J Syst Evol Microbiol 62:1963–1969
Article
CAS
PubMed
Google Scholar