Abstract
The identification of disturbance thresholds is important for many aspects of aquatic resource management, including the establishment of regulatory criteria and the identification of stream reference conditions. A number of quantitative or model-based approaches can be used to identify disturbance thresholds, including nonparametric deviance reduction (NDR), piecewise regression (PR), Bayesian changepoint (BCP), quantile piecewise constant (QPC), and quantile piecewise linear (QPL) approaches. These methods differ in their assumptions regarding the nature of the disturbance-response variable relationship, which can make selecting among the approaches difficult for those unfamiliar with the methods. We first provide an overview of each of the aforementioned approaches for identifying disturbance thresholds, including the types of data for which the approaches are intended. We then compare threshold estimates from each of these approaches to evaluate their robustness using both simulated and empirical datasets. We found that most of the approaches were accurate in estimating thresholds for datasets with drastic changes in responses variable at the disturbance threshold. Conversely, only the PR and QPL approaches performed well for datasets with conditional mean or upper boundary changes in response variables at the disturbance threshold. The most robust threshold identification approach appeared to be the QPL approach; this method provided relatively accurate threshold estimates for most of the evaluated datasets. Because accuracy of disturbance threshold estimates can be affected by a number of factors, we recommend that several steps be followed when attempting to identify disturbance thresholds. These steps include plotting and visually inspecting the disturbance-response data, hypothesizing what mechanisms likely generate the observed pattern in the disturbance-response data, and plotting the estimated threshold in relation to the disturbance-response data to ensure the appropriateness of the threshold estimate.
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References
Allan JD (2004) Landscape and riverscapes: the influence of land use on river ecosystems. Annual Review of Ecology and Systematics 35:257–284
Booth DB, Jackson CR (1997) Urbanization of aquatic systems: degradation thresholds, stormwater detection, and the limits of mitigation. Journal Of The American Water Resources Association 33:1077–1090
Breiman L, Friedman JH, Olshen R, Stone CJ (1984) Classification and regression trees. Wadsworth International Group, Belmont, CA
Bühlmann P, Yu B (2002) Analyzing bagging. Annals Of Statistics 30:927–961
Cade BS, Noon BR (2003) A gentle introduction to quantile regression for ecologists. Frontiers in Ecology and the Environment 1:412–420
Cade BS, Terrell JW, Schroeder RL (1999) Estimating effects of limiting factors with regression quantiles. Ecology 80:311–323
Chaudhuri P, Loh WY (2002) Nonparametric estimation of conditional quantiles using quantile regression trees. Bernoulli 8:561–576
Denoël M, Ficetola GF (2007) Landscape-level thresholds and newt conservation. Ecological Applications 17:302–309
EPA (U.S. Environmental Protection Agency) (2000a) Ambient water quality criteria recommendations, information supporting the development of state and tribal nutrient criteria, rivers and streams in nutrient ecoregions VII and VIII. EPA 822-B-00-017. EPA, Office of Water, Washington, DC
EPA (U.S. Environmental Protection Agency) (2000b) Mid-Atlanta highland streams assessment. EPA903/R-00/015 822-B-00-017. EPA, Region 3, Washington, DC
Fore LS, Karr JR, Wisseman RW (1996) Assessing invertebrate responses to human activities: evaluating alternative approaches. Journal Of The North American Benthological Society 15:212–231
Groffman PM, Baron JS, Blett T, Gold AJ, Goodman I, Gunderson LH., Levinson BM, Palmer MA, Paerl HW, Peterson GD, Poff NL, Rejeski DW, Reynolds JF, Turner MG, Weathers KC, Wiens J (2006) Ecological thresholds: the key to successful environmental management or an important concept with no practical application? Ecosystems 9:1–13
Karr JR, Chu EW (1999) Restoring life in running waters, better biological monitoring. Island Press, Covelo, CA
Kim HY, Fay MP, Feuer EJ, Midthune DN (2000) Permutation methods for joinpoint regression with applications to cancer rates. Statistics In Medicine 19:335–351
King RS, Richardson CJ (2003) Integrating bioassessment and ecological risk assessment: an approach to developing numerical water-quality criteria. Environmental Management 31:795–809
Lerman PM (1980) Fitting segmented regression models by grid search. Applied Statistics 29:77–84
Loh WY (2002) Regression trees with unbiased variable selection and interaction detection. Statistica Sinica 12:361–386
Loh WY (2007) GUIDE (version 5.2) User manual. University of Wisconsin, Madison. Available at: http://www.stat.wisc.edu/~loh/treeprogs/guide/guideman.pdf. Accessed October 15, 2007
Lunn DJ, Thomas A, Best N, Spiegelhalter D (2000) WinBUGS—a Bayesian modelling framework: concepts, structure, and extensibility. Statistics and Computing 10:325–337
Lyons J (1992) Using the index of biotic integrity (IBI) to measure environmental quality in warmwater streams of Wisconsin. General Technical Report NC-149. U.S. Department of Agriculture, Forest Service, North Central Experiment Station, St. Paul, MN
Lyons J, Wang L, Simonson TD (1996) Development and validation of an index of biotic integrity for cold-water streams in Wisconsin. North American Journal of Fisheries Management 16:241–256
Muggeo VMR (2003) Estimating regression models with unknown break-points. Statistics in Medicine 22:3055–3071
National Cancer Institute (2005) Joinpoint regression program, version 3.0. Silver Spring, Maryland. Available at: http://srab.cancer.gov/joinpoint. Accessed October 15, 2007
Paul MJ, Meyer L (2001) Streams in the urban landscape. Annual Review of Ecology and Systematics 32:333–365
Qian SS, King RS, Richardson CJ (2003) Two statistical methods for the detection of environmental thresholds. Ecological Modelling 166:87–97
Qian SS, Pan Y, King RS (2004) Soil total phosphorus threshold in the Everglades: a Bayesian changepoint analysis for multinomial response data. Ecological Indicators 4:29–37
R Development Core Team (2007) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria
SAS Institute (2003) SAS/STAT user’s guide. SAS Institute, Cary, NC
Schueler T (1994) The importance of imperviousness. Watershed Protection Techniques 1:100–111
Seber GAF, Wild CJ (2003) Nonlinear regression. John Wiley & Sons, Hoboken, NJ
Tiwari RC, Cronin KA, Davis W, Feuer EJ, Yu B, Chib S (2005) Bayesian model selection for join point regression with application to age-adjusted cancer rates. Applied Statistics 54:919–939
Therneau TM, Atkinson B, Ripley B (2007) rpart: recursive partitioning. R package version 3.1-36. Available at: http://cran.r-project.org. Accessed October 15, 2007
Toms JD, Lesperance ML (2003) Piecewise regression: a tool for identifying ecological thresholds. Ecology 84:2034–2041
Wang L, Lyons J (2003) Fish and benthic macroinvertebrate assemblages as indicators of stream degradation in urbanizing watersheds. In: Simon TP (ed) Biological response signatures: multimetric index patterns for assessment of freshwater aquatic assemblages. CRC Press, Boca Raton, FL
Wang L, Lyons J, Kanehl P (2003) Impacts of urban land cover on trout streams in Wisconsin and Minnesota. Transactions of the American Fisheries Society 132:825–839
Wang L, Robertson DM, Garrison PJ (2007) Linkages between nutrients and assemblages of macroinvertebrates and fish in wadeable streams: implication to nutrient criteria development. Environmental Management 39:194–212
Wang L, Seelbach PW, Hughes RM (2006a) Introduction to landscape influences on stream habitats and biological assemblages. American Fisheries Society Symposium 48:1–23
Wang L, Seelbach PW, Lyons J (2006b) Effects of levels of human disturbance on the influence of watershed, riparian, and reach scale factors on fish assemblages. American Fisheries Society Symposium 48:199–219
Wang L, Brenden T, Seelbach PW, Cooper A, Allan D, Clark R Jr, Wiley M (2008) Landscape based identification of human disturbance gradients and references for streams in Michigan. Environ Monitor Assess 141:1–17
Acknowledgments
The authors thank Wei-Yin Loh for assistance in using GUIDE and for reviewing our descriptions of the QPC and QPL approaches. Dale Robertson, Dave Graczyke, and seasonal workers of USGS collected the nutrient data and Paul Kanehl and seasonal workers of Wisconsin DNR collected the fish data for the Wisconsin dataset. Arthur Cooper captured the land-use data for the Michigan streams. The authors thank three anonymous reviewers for commenting on early versions of the manuscript. This project was partly supported by Federal Aid in Sport Fishery Restoration Program, Project F-80-R, through the Fisheries Division of the Michigan Department of Natural Resources. This is manuscript 20YY-NN of the Quantitative Fisheries Center at Michigan State University.
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Brenden, T.O., Wang, L. & Su, Z. Quantitative Identification of Disturbance Thresholds in Support of Aquatic Resource Management. Environmental Management 42, 821–832 (2008). https://doi.org/10.1007/s00267-008-9150-2
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DOI: https://doi.org/10.1007/s00267-008-9150-2