Ahmad S, Lee SY, Kong HG, Jo EJ, Choi HK, Khan R, Lee SW (2016) Genetic determinants for pyomelanin production and its protective effect against oxidative stress in Ralstonia solanacearum. PLoS One 11:e0160845. https://doi.org/10.1371/journal.pone.0160845
Article
CAS
PubMed
PubMed Central
Google Scholar
Almeida-Paes R, Frases S, de Sousa Araújo G, de Oliveira MM, Gerfen GJ, Nosanchuk JD, Zancopé-Oliveira RM (2012) Biosynthesis and functions of a melanoid pigment produced by species of the Sporothrix complex in the presence of L-tyrosine. Appl Environ Microbiol 78:8623–8630. https://doi.org/10.1128/AEM.02414-12
Article
CAS
PubMed
PubMed Central
Google Scholar
Arias-Barrau E, Olivera ER, Luengo JM, Fernández C, Galán B, García JL, Díaz E, Miñambres B (2004) The homogentisate pathway: a central catabolic pathway involved in the degradation of L-phenylalanine, L-tyrosine, and 3-hydroxyphenylacetate in Pseudomonas putida. J Bacteriol 186:5062–5077. https://doi.org/10.1128/JB.186.15.5062-5077.2004
Article
CAS
PubMed
PubMed Central
Google Scholar
Arunasri K, Adil M, Khan PA, Shivaji S (2014) Global gene expression analysis of long-term stationary phase effects in E. coli K12 MG1655. PLoS One 9:e96701. https://doi.org/10.1371/journal.pone.0096701
Article
CAS
PubMed
PubMed Central
Google Scholar
Aubi O, Flydal MI, Zheng H, Skjærven L, Rekand I, Leiros HK, Haug BE, Cianciotto NP, Martinez A, Underhaug J (2015) Discovery of a specific inhibitor of pyomelanin synthesis in Legionella pneumophila. J Med Chem 58:8402–8412. https://doi.org/10.1021/acs.jmedchem.5b01589
Article
CAS
PubMed
Google Scholar
Bongaerts J, Krämer M, Müller U, Raeven L, Wubbolts M (2001) Metabolic engineering for microbial production of aromatic amino acids and derived compounds. Metab Eng 3:289–300. https://doi.org/10.1006/mben.2001.0196
Article
CAS
PubMed
Google Scholar
Chai B, Wang H, Chen X (2012) Draft genome sequence of high-melanin-yielding Aeromonas media strain WS. J Bacteriol 194:6693–6694. https://doi.org/10.1128/JB.01807-12
Article
CAS
PubMed
PubMed Central
Google Scholar
Chen LY (2013) Glycerol modulates water permeation through Escherichia coli aquaglyceroporin GlpF. Biochim Biophys Acta 1828:1786–1793. https://doi.org/10.1016/j.bbamem.2013.03.008
Article
CAS
PubMed
PubMed Central
Google Scholar
Danilova LV, Gelfand MS, Lyubetsky VA, Laikova ON (2003) Computer-assisted analysis of regulation of the glycerol-3-phosphate metabolism in genomes of proteobacteria. Mol Biol 37:716–722. https://doi.org/10.1023/A:1026037027266
Article
CAS
Google Scholar
de Almeida A, Giordano AM, Nikel PI, Pettinari MJ (2010) Effects of aeration on the synthesis of poly(3-hydroxybutyrate) from glycerol and glucose in recombinant Escherichia coli. Appl Environ Microbiol 76:2036–2040. https://doi.org/10.1128/AEM.02706-09
Article
CAS
PubMed
PubMed Central
Google Scholar
Ebanks RO, Goguen M, McKinnon S, Pinto DM, Ross NW (2005) Identification of the major outer membrane proteins of Aeromonas salmonicida. Dis Aquat Org 68:29–38. https://doi.org/10.3354/dao068029
Article
CAS
Google Scholar
Escapa IF, del Cerro C, García JL, Prieto MA (2013) The role of GlpR repressor in Pseudomonas putida KT2440 growth and PHA production from glycerol. Environ Microbiol 15:93–110. https://doi.org/10.1111/j.1462-2920.2012.02790.x
Article
CAS
PubMed
Google Scholar
Fernández-Cañón JM, Granadino B, Beltrán-Valero de Bernabé D, Renedo M, Fernández-Ruiz E, Peñalva MA, Rodríguez de Córdoba S (1996) The molecular basis of alkaptonuria. Nat Genet 14:19–24. https://doi.org/10.1038/ng0996-19
Article
PubMed
Google Scholar
Fuqua WC, Weiner RM (1993) The melA gene is essential for melanin biosynthesis in the marine bacterium Shewanella colwelliana. J Gen Microbiol 139:1105–1114. https://doi.org/10.1099/00221287-139-5-1105
Article
CAS
PubMed
Google Scholar
Gonzalez R, Murarka A, Dharmadi Y, Yazdani SS (2008) A new model for the anaerobic fermentation of glycerol in enteric bacteria: trunk and auxiliary pathways in Escherichia coli. Metab Eng 10:234–245. https://doi.org/10.1016/j.ymben.2008.05.001
Article
CAS
PubMed
Google Scholar
Herrera MC, Krell T, Zhang X, Ramos JL (2009) PhhR binds to target sequences at different distances with respect to RNA polymerase in order to activate transcription. J Mol Biol 394:576–586. https://doi.org/10.1016/j.jmb.2009.09.045
Article
CAS
PubMed
Google Scholar
Hunter RC, Newman DK (2010) A putative ABC transporter, HatABCDE, is among molecular determinants of pyomelanin production in Pseudomonas aeruginosa. J Bacteriol 192:5962–5971. https://doi.org/10.1128/JB.01021-10
Article
CAS
PubMed
PubMed Central
Google Scholar
Keith KE, Killip L, He P, Moran GR, Valvano MA (2007) Burkholderia cenocepacia C5424 produces a pigment with antioxidant properties using a homogentisate intermediate. J Bacteriol 189:9057–9065. https://doi.org/10.1128/JB.00436-07
Article
CAS
PubMed
PubMed Central
Google Scholar
Keller S, Macheleidt J, Scherlach K, Schmaler-Ripcke J, Jacobsen ID, Heinekamp T, Brakhage AA (2011) Pyomelanin formation in Aspergillus fumigatus requires HmgX and the transcriptional activator HmgR but is dispensable for virulence. PLoS One 6:e26604. https://doi.org/10.1371/journal.pone.0026604
Article
CAS
PubMed
PubMed Central
Google Scholar
Kotob SI, Coon SL, Quintero EJ, Weiner RM (1995) Homogentisic acid is the primary precursor of melanin synthesis in Vibrio cholerae, a Hyphomonas strain, and Shewanella colwelliana. Appl Environ Microbiol 61:1620–1622
CAS
PubMed
PubMed Central
Google Scholar
Larionov A, Krause A, Miller W (2005) A standard curve based method for relative real time PCR data processing. BMC Bioinformatics 6:62. https://doi.org/10.1186/1471-2105-6-62
Article
CAS
PubMed
PubMed Central
Google Scholar
Larson TJ, Cantwell JS, van Loo-Bhattacharya AT (1992) Interaction at a distance between multiple operators controls the adjacent, divergently transcribed glpTQ-glpACB operons of Escherichia coli K-12. J Biol Chem 267:6114–6121
CAS
PubMed
Google Scholar
Loprasert S, Whangsuk W, Dubbs JM, Sallabhan R, Somsongkul K, Mongkolsuk S (2007) HpdR is a transcriptional activator of Sinorhizobium meliloti hpdA, which encodes a herbicide-targeted 4-hydroxyphenylpyruvate dioxygenase. J Bacteriol 189:3660–3664. https://doi.org/10.1128/JB.01662-06
Article
CAS
PubMed
PubMed Central
Google Scholar
Martin JP, Batkoff B (1987) Homogentisic acid autoxidation and oxygen radical generation: implications for the etiology of alkaptonuric arthritis. Free Radic Biol Med 3:241–250. https://doi.org/10.1016/S0891-5849(87)80031-X
Article
CAS
PubMed
Google Scholar
McFall E, Newman EB (1996) Amino acids as carbon sources. In: Neidhardt FC, Curtiss R III, Ingraham JL, Lin EC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE (eds) Escherichia coli and Salmonella: cellular and molecular biology, 2nd edn. ASM Press, Washington, DC, pp 358–379
Google Scholar
Mistry JB, Bukhari M, Taylor AM (2013) Alkaptonuria. Rare Dis 1:e27475. https://doi.org/10.4161/rdis.27475
Article
PubMed
PubMed Central
Google Scholar
Morales G, Linares JF, Beloso A, Albar JP, Martínez JL, Rojo F (2004) The Pseudomonas putida Crc global regulator controls the expression of genes from several chromosomal catabolic pathways for aromatic compounds. J Bacteriol 186:1337–1344. https://doi.org/10.1128/JB.186.5.1337-1344.2004
Article
CAS
PubMed
PubMed Central
Google Scholar
Nikel PI, Kim J, de Lorenzo V (2014) Metabolic and regulatory rearrangements underlying glycerol metabolism in Pseudomonas putida KT2440. Environ Microbiol 16:239–254. https://doi.org/10.1111/1462-2920.12224
Article
CAS
PubMed
Google Scholar
Noorian P, Jie H, Chen Z, Kjelleberg S, Wilkins MR, Sun S, McDougald D (2017) Pyomelanin produced by Vibrio cholerae confers resistance to predation by Acanthamoeba castellanii. FEMS Microbiol Ecol 93(12). https://doi.org/10.1093/femsec/fix147
Nosanchuk JD, Casadevall A (2003) The contribution of melanin to microbial pathogenesis. Cell Microbiol 5:203–223. https://doi.org/10.1046/j.1462-5814.2003.00268.x
Article
CAS
PubMed
Google Scholar
Palmer GC, Palmer KL, Jorth PA, Whiteley M (2010) Characterization of the Pseudomonas aeruginosa transcriptional response to phenylalanine and tyrosine. J Bacteriol 192:2722–2728. https://doi.org/10.1128/JB.00112-10
Article
CAS
PubMed
PubMed Central
Google Scholar
Pavan ME, Abbott SL, Zorzópulos J, Janda JM (2000) Aeromonas salmonicida subsp. pectinolytica subsp. nov., a new pectinase-positive subspecies isolated from a heavily polluted river. Int J Syst Evol Microbiol 50:1119–1124. https://doi.org/10.1099/00207713-50-3-1119
Article
CAS
PubMed
Google Scholar
Pavan ME, Pavan EE, López NI, Levin L, Pettinari MJ (2015) Living in an extremely polluted environment: clues from the genome of melanin-producing Aeromonas salmonicida subsp. pectinolytica 34melT. Appl Environ Microbiol 81:5235–5248. https://doi.org/10.1128/AEM.00903-15
Article
CAS
PubMed
PubMed Central
Google Scholar
Plonka PM, Grabacka M (2006) Melanin synthesis in microorganisms-biotechnological and medical aspects. Acta Biochim Pol 53:429–443
CAS
PubMed
Google Scholar
Rocaboy-Faquet E, Noguer T, Romdhane S, Bertrand C, Dayan FE, Barthelmebs L (2014) Novel bacterial bioassay for a high-throughput screening of 4-hydroxyphenylpyruvate dioxygenase inhibitors. Appl Microbiol Biotechnol 98:7243–7252. https://doi.org/10.1007/s00253-014-5793-5
Article
CAS
PubMed
Google Scholar
Rodríguez-Rojas A, Mena A, Martín S, Borrell N, Oliver A, Blázquez J (2009) Inactivation of the hmgA gene of Pseudomonas aeruginosa leads to pyomelanin hyperproduction, stress resistance and increased persistence in chronic lung infection. Microbiology 155:1050–1057. https://doi.org/10.1099/mic.0.024745-0
Article
CAS
PubMed
Google Scholar
Rojo F (2010) Carbon catabolite repression in Pseudomonas: optimizing metabolic versatility and interactions with the environment. FEMS Microbiol Rev 34:658–684. https://doi.org/10.1111/j.1574-6976.2010.00218.x
Article
CAS
PubMed
Google Scholar
Ryan A, Kaplan E, Nebel JC, Polycarpou E, Crescente V, Lowe E, Preston GM, Sim E (2014) Identification of NAD(P)H quinone oxidoreductase activity in azoreductases from P. aeruginosa: azoreductases and NAD(P)H quinone oxidoreductases belong to the same FMN-dependent superfamily of enzymes. PLoS One 9:e98551. https://doi.org/10.1371/journal.pone.0098551
Article
CAS
PubMed
PubMed Central
Google Scholar
Sanchez-Amat A, Ruzafa C, Solano F (1998) Comparative tyrosine degradation in Vibrio cholerae strains. The strain ATCC 14035 as a prokaryotic melanogenic model of homogentisate-releasing cell. Comp Biochem Physiol B Biochem Mol Biol 119:557–562. https://doi.org/10.1016/S0305-0491(98)00028-5
Article
CAS
PubMed
Google Scholar
Santucci A, Bernardini G, Braconi D, Petricci E, Manetti F (2017) 4-Hydroxyphenylpyruvate dioxygenase and its inhibition in plants and animals: small molecules as herbicides and agents for the treatment of human inherited diseases. J Med Chem 60:4101–4125. https://doi.org/10.1021/acs.jmedchem.6b01395
Article
CAS
PubMed
Google Scholar
Solano F (2014) Melanins: skin pigments and much more - types, structural models, biological functions, and formation routes. New J Sci 1:1–28. https://doi.org/10.1155/2014/498276
Article
CAS
Google Scholar
Stepanova V, Rodionov DA (2011) Genomic analysis of transcriptional regulation of aromatic amino acid metabolism in gamma-proteobacteria. Department of Bioengineering and Bioinformatics of MV Lomonosov Moscow State University 352:186–188
Google Scholar
Stuber K, Burr SE, Braun M, Wahli T, Frey J (2003) Type III secretion genes in Aeromonas salmonicida subsp salmonicida are located on a large thermolabile virulence plasmid. J Clin Microbiol 41:3854–3856. https://doi.org/10.1128/JCM.41.8.3854-3856.2003
Article
CAS
PubMed
PubMed Central
Google Scholar
Tanaka KH, Vincent AT, Emond-Rheault JG, Adamczuk M, Frenette M, Charette SJ (2017) Plasmid composition in Aeromonas salmonicida subsp. salmonicida 01-B526 unravels unsuspected type three secretion system loss patterns. BMC Genomics 18:528. https://doi.org/10.1186/s12864-017-3921-1
Article
CAS
PubMed
PubMed Central
Google Scholar
Turick CE, Caccavo F Jr, Tisa LS (2003) Electron transfer from Shewanella algae BrY to hydrous ferric oxide is mediated by cell-associated melanin. FEMS Microbiol Lett 220:99–104. https://doi.org/10.1016/S0378-1097(03)00096-X
Article
CAS
PubMed
Google Scholar
Turick CE, Knox AS, Becnel JM, Ekechukwu AA, Milliken CE (2010) Properties and function of pyomelanin. In: Elnashar MM (ed) Biopolymers, 1st edn. Sciyo, Rijeka, pp 449–472. https://doi.org/10.5772/10273
Chapter
Google Scholar
Upton C, Buckley JT (1995) A new family of lipolytic enzymes? Trends Biochem Sci 20:178–179. https://doi.org/10.1016/S0968-0004(00)89002-7
Article
CAS
PubMed
Google Scholar
Vanden Bergh P, Heller M, Braga-Lagache S, Frey J (2013) The Aeromonas salmonicida subsp. salmonicida exoproteome: determination of the complete repertoire of Type-Three Secretion System effectors and identification of other virulence factors. Proteome Sci 11:42. https://doi.org/10.1186/1477-5956-11-42
Article
CAS
Google Scholar
Vincent AT, Rouleau FD, Moineau S, Charette SJ (2017) Study of mesophilic Aeromonas salmonicida A527 strain sheds light on the species’ lifestyles and taxonomic dilemma. FEMS Microbiol Lett 364(23). https://doi.org/10.1093/femsle/fnx239
Wang H, Qiao Y, Chai B, Qiu C, Chen X (2015) Identification and molecular characterization of the homogentisate pathway responsible for pyomelanin production, the major melanin constituents in Aeromonas media WS. PLoS One 10:e0120923. https://doi.org/10.1371/journal.pone.0120923
Article
CAS
PubMed
PubMed Central
Google Scholar
Wu L, Lin X, Peng X (2009) From proteome to genome for functional characterization of pH-dependent outer membrane proteins in Escherichia coli. J Proteome Res 8:1059–1070. https://doi.org/10.1021/pr800818r
Article
CAS
PubMed
Google Scholar
Yu HB, Zhang YL, Lau YL, Yao F, Vilches S, Merino S, Tomas JM, Howard SP, Leung KY (2005) Identification and characterization of putative virulence genes and gene clusters in Aeromonas hydrophila PPD134/91. Appl Environ Microbiol 71:4469–4477. https://doi.org/10.1128/AEM.71.8.4469-4477.2005
Article
CAS
PubMed
PubMed Central
Google Scholar
Zatkova A (2011) An update on molecular genetics of Alkaptonuria (AKU). J Inherit Metab Dis 34:1127–1136. https://doi.org/10.1007/s10545-011-9363-z
Article
PubMed
Google Scholar
Zeng Z, Guo XP, Cai X, Wang P, Li B, Yang JL, Wang X (2017) Pyomelanin from Pseudoalteromonas lipolytica reduces biofouling. Microb Biotechnol 10:1718–1731. https://doi.org/10.1111/1751-7915.12773
Article
CAS
PubMed
PubMed Central
Google Scholar