Arrowsmith TJ, Malpartida F, Sherman DH, Birch A, Hopwood DA, Robinson JA (1992) Characterisation of actI-homologous DNA encoding polyketide synthase genes from the monensin producer Streptomyces cinnamonensis. Mol Gen Genet 234:254–264
CAS
Article
Google Scholar
Baltz RH (2016) Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and other actinomycetes. J Ind Microbiol Biotechnol 43:343–370
CAS
Article
Google Scholar
Behrmann I, Hillemann D, Pühler A, Strauch E, Wohlleben W (1990) Overexpression of a Streptomyces viridochromogenes gene (glnII) encoding a glutamine synthetase similar to those of eucaryotes confers resistance against the antibiotic phosphinothricyl-alanyl- ala. J Bacteriol 1729:5326–5334
Article
Google Scholar
Bibb MJ, Ward JM, Hopwood DA (1978) Transformation of plasmid DNA into Streptomyces at high frequency. Nature 274:398–400
CAS
Article
Google Scholar
Bierman M, Logan R, O’Brien K, Seno ET, Nagaraja-Rao R, Schoner BE (1992) Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. Gene 116:43–49
CAS
Article
Google Scholar
Bilyk B, Weber S, Myronovskyi M, Bilyk O, Petzke L, Luzhetskyy A (2013) In vivo random mutagenesis of streptomycetes using mariner-based transposon Himar1. Appl Microbiol Biotechnol 97:351–359
CAS
Article
Google Scholar
Birch AW, Cullum J (1985) Temperature-sensitive mutants of the Streptomyces plasmid pIJ702. J Gen Microbiol 131:1299–1303
CAS
PubMed
Google Scholar
Blanco G, Pereda A, Mendez C, Salas JA (1992) Cloning and disruption of a fragment of Streptomyces halstedii DNA involved in the biosynthesis of a spore pigment. Gene 112:59–65
CAS
Article
Google Scholar
Chevillotte M, Menges R, Muth G, Wohlleben W, Stegmann E (2008) A quick and reliable method for monitoring gene expression in actinomycetes. J Biotechnol 135:262–265
CAS
Article
Google Scholar
Cormack BP, Valdivia RH, Falkow S (1996) FACS-optimized mutants of the green fluorescent protein (GFP). Gene 173:33–38
CAS
Article
Google Scholar
Eichenlaub R (1979) Mutants of the mini-F plasmid pML31 thermosensitive in replication. J Bacteriol 138:559–566
CAS
PubMed
PubMed Central
Google Scholar
Espinosa M, Cohen S, Couturier M, Del Solar G, Diaz Orejas R, Giraldo R, Janniere L, Miller C, Osborn M, Thomas CM (2000) Plasmid replication and copy number control. In: Thomas CM (ed) The horizontal gene pool. Harwood, Amsterdam, pp 1–48
Google Scholar
Eys S, Schwartz D, Wohlleben W, Schinko E (2008) Three thioesterases are involved in the biosynthesis of phosphinothricin tripeptide in Streptomyces viridochromogenes Tu494. Antimicrob Agents Chemother 52:1686–1696
CAS
Article
Google Scholar
Fedoryshyn M, Petzke L, Welle E, Bechthold A, Luzhetskyy A (2008a) Marker removal from actinomycetes genome using Flp recombinase. Gene 419:43–47
CAS
Article
Google Scholar
Fedoryshyn M, Welle E, Bechthold A, Luzhetskyy A (2008b) Functional expression of the Cre recombinase in actinomycetes. Appl Microbiol Biotechnol 78:1065–1070
CAS
Article
Google Scholar
Feirtag JM, Petzel JP, Pasalodos E, Baldwin KA, McKay LL (1991) Thermosensitive plasmid replication, temperature-sensitive host growth, and chromosomal plasmid integration conferred by Lactococcus lactis subsp. cremoris lactose plasmids in Lactococcus lactis subsp. lactis. Appl Environ Microbiol 57:539–548
CAS
PubMed
PubMed Central
Google Scholar
Fernandez-Martinez LT, Bibb MJ (2014) Use of the meganuclease I-SceI of Saccharomyces cerevisiae to select for gene deletions in actinomycetes. Sci Rep 4:7100. https://doi.org/10.1038/srep07100
Article
PubMed
PubMed Central
Google Scholar
Fink D, Falke D, Wohlleben W, Engels A (1999) Nitrogen metabolism in Streptomyces coelicolor A3(2): modification of glutamine synthetase I by an adenylyltransferase. Microbiology 145:2313–2322
CAS
Article
Google Scholar
Flett F, Mersinias V, Smith CP (1997) High efficiency intergeneric conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA-restricting streptomycetes. FEMS Microbiol Lett 155:223–229
CAS
Article
Google Scholar
Gentz R, Langner A, Chang AC, Cohen SN, Bujard H (1981) Cloning and analysis of strong promoters is made possible by the downstream placement of a RNA termination signal. Proc Natl Acad Sci U S A 78:4936–4940
CAS
Article
Google Scholar
Gerdes K, Ayora S, Canosa I, Ceglowski P, Diaz Orejas R, Franch T, Gultyaev AP, Bugge Jensen R, Kobayashi I, Macpherson C, Summers D, Thomas CM, Zielenkiewicz U (2000) Plasmid maintenance systems. In: Thomas CM (ed) The horizontal gene pool. Harwood, pp 49–86
Gust B, Challis GL, Fowler K, Kieser T, Chater KF (2003) PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin. Proc Natl Acad Sci U S A 100:1541–1546
CAS
Article
Google Scholar
Herrmann S, Siegl T, Luzhetska M, Petzke L, Jilg C, Welle E, Erb A, Leadlay PF, Bechthold A, Luzhetskyy A (2012) Site-specific recombination strategies for engineering actinomycete genomes. Appl Environ Microbiol 78:1804–1812
CAS
Article
Google Scholar
Huang H, Zheng G, Jiang W, Hu H, Lu Y (2015) One-step high-efficiency CRISPR/Cas9-mediated genome editing in Streptomyces. Acta Biochim Biophys Sin 47:231–243
CAS
Article
Google Scholar
Hulter N, Ilhan J, Wein T, Kadibalban AS, Hammerschmidt K, Dagan T (2017) An evolutionary perspective on plasmid lifestyle modes. Curr Opin Microbiol 38:74–80
Article
Google Scholar
Kataoka M, Kiyose YM, Michisuji Y, Horiguchi T, Seki T, Yoshida T (1994) Complete nucleotide sequence of the Streptomyces nigrifaciens plasmid, pSN22: genetic organization and correlation with genetic properties. Plasmid 32:55–69
CAS
Article
Google Scholar
Katz E, Thompson CJ, Hopwood DA (1983) Cloning and expression of the tyrosinase gene from Streptomyces antibioticus in Streptomyces lividans. J Gen Microbiol 129:2703–2714
CAS
PubMed
Google Scholar
Kieser T, Hopwood DA, Wright HM, Thompson CJ (1982) pIJ101, a multi-copy broad host-range Streptomyces plasmid: functional analysis and development of DNA cloning vectors. Mol Gen Genet 185:223–238
CAS
Article
Google Scholar
Kieser T, Bibb MJ, Buttner MJ, Chater KF, Hopwood DA (2000) Practical Streptomyces Genetics. The John Innes Foundation, Norwich
Google Scholar
Kumagai T, Nakano T, Maruyama M, Mochizuki H, Sugiyama M (1999) Characterization of the bleomycin resistance determinant encoded on the transposon Tn5. FEBS Lett 442:34–38
CAS
Article
Google Scholar
Labes G, Simon R, Wohlleben W (1990) A rapid method for the analysis of plasmid content and copy number in various Streptomycetes grown on agar plates. Nucleic Acids Res 18:2197–2197
CAS
Article
Google Scholar
Labes G, Bibb M, Wohlleben W (1997) Isolation and characterization of a strong promoter element from the Streptomyces ghanaensis phage I19 using the gentamicin resistance gene (aacC1) of Tn1696 as reporter. Microbiol 143:1503–1512
CAS
Article
Google Scholar
Low ZJ, Pang LM, Ding Y, Cheang QW, Le Mai Hoang K, Thi Tran H, Li J, Liu XW, Kanagasundaram Y, Yang L, Liang ZX (2018) Identification of a biosynthetic gene cluster for the polyene macrolactam sceliphrolactam in a Streptomyces strain isolated from mangrove sediment. Sci Rep 8:1594. https://doi.org/10.1038/s41598-018-20018-8
CAS
Article
PubMed
PubMed Central
Google Scholar
Lussier FX, Denis F, Shareck F (2010) Adaptation of the highly productive T7 expression system to Streptomyces lividans. Appl Environ Microbiol 76:967–970
CAS
Article
Google Scholar
Maas RM, Gotz J, Wohlleben W, Muth G (1998) The conjugative plasmid pSG5 from Streptomyces ghanaensis DSM 2932 differs in its transfer functions from other Streptomyces rolling-circle-type plasmids. Microbiology 144:2809–2817
CAS
Article
Google Scholar
Maguin E, Duwat P, Hege T, Ehrlich D, Gruss A (1992) New thermosensitive plasmid for gram-positive bacteria. J Bacteriol 174:5633–5638
CAS
Article
Google Scholar
Martinez A, Kolvek SJ, Yip CL, Hopke J, Brown KA, MacNeil IA, Osburne MS (2004) Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts. Appl Environ Microbiol 70:2452–2463
CAS
Article
Google Scholar
Michta E, Schad K, Blin K, Ort-Winklbauer R, Rottig M, Kohlbacher O, Wohlleben W, Schinko E, Mast Y (2012) The bifunctional role of aconitase in Streptomyces viridochromogenes Tu494. Environ Microbiol 14:3203–3219
CAS
Article
Google Scholar
Million-Weaver S, Camps M (2014) Mechanisms of plasmid segregation: have multicopy plasmids been overlooked? Plasmid 75:27–36
CAS
Article
Google Scholar
Murakami T, Holt TG, Thompson CJ (1989) Thiostrepton-induced gene expression in Streptomyces lividans. J Bacteriol 171:1459–1466
CAS
Article
Google Scholar
Muth G, Wohlleben W, Puhler A (1988) The minimal replicon of the Streptomyces ghanaensis plasmid pSG5 identified by subcloning and Tn5 mutagenesis. Mol Gen Genet 211:424–429
CAS
Article
Google Scholar
Muth G, Nußbaumer B, Wohlleben W, Pühler A (1989) A vector system with temperature-sensitive replication for gene disruption and mutational cloning in streptomycetes. Mol Gen Genet 219:341–348
CAS
Article
Google Scholar
Muth G, Farr M, Hartmann V, Wohlleben W (1995) Streptomyces ghanaensis plasmid pSG5: nucleotide sequence analysis of the self-transmissible minimal replicon and characterization of the replication mode. Plasmid 33:113–126
CAS
Article
Google Scholar
Myronovskyi M, Welle E, Fedorenko V, Luzhetskyy A (2011) Beta-glucuronidase as a sensitive and versatile reporter in actinomycetes. Appl Environ Microbiol 77:5370–5383
CAS
Article
Google Scholar
Nakamura J, Kanno S, Kimura E, Matsui K, Nakamatsu T, Wachi M (2006) Temperature-sensitive cloning vector for Corynebacterium glutamicum. Plasmid 56(3):179–186
CAS
Article
Google Scholar
Olorunniji FJ, Rosser SJ, Stark WM (2016) Site-specific recombinases: molecular machines for the genetic revolution. Biochem J 473:673–684
CAS
Article
Google Scholar
Ostash B, Yushchuk O, Tistechok S, Mutenko H, Horbal L, Muryn A, Dacyuk Y, Kalinowski J, Luzhetskyy A, Fedorenko V (2015) The adpA-like regulatory gene from Actinoplanes teichomyceticus: in silico analysis and heterologous expression. World J Microbiol Biotechnol 31:1297–1301
CAS
Article
Google Scholar
Pernodet JL, Guerineau M (1981) Isolation and physical characterization of Streptomycete plasmids. Mol Gen Genet 182:53–59
CAS
Article
Google Scholar
Pernodet JL, Simonet JM, Guerineau M (1984) Plasmids in different strains of Streptomyces ambofaciens: free and integrated form of plasmid pSAM2. Mol Gen Genet 198:35–41
CAS
Article
Google Scholar
Petzke L, Luzhetskyy A (2009) In vivo Tn5-based transposon mutagenesis of Streptomycetes. Appl Microbiol Biotechnol 83:979–986
CAS
Article
Google Scholar
Pfeifer V, Nicholson GJ, Ries J, Recktenwald J, Schefer AB, Shawky RM, Schroder J, Wohlleben W, Pelzer S (2001) A polyketide synthase in glycopeptide biosynthesis: the biosynthesis of the non-proteinogenic amino acid (S)-3,5-dihydroxyphenylglycine. J Biol Chem 276:38370–38377
CAS
Article
Google Scholar
Pigac J, Vujaklija D, Toman Z, Gamulin V, Schrempf H (1988) Structural instability of a bifunctional plasmid pZG1 and single-stranded DNA formation in Streptomyces. Plasmid 19:222–230
CAS
Article
Google Scholar
Pridmore RD (1987) New and versatile cloning vectors with kanamycin-resistance marker. Gene 56:309–312
CAS
Article
Google Scholar
Qin Z, Munnoch JT, Devine R, Holmes NA, Seipke RF, Wilkinson KA, Wilkinson B, Hutchings MI (2017) Formicamycins, antibacterial polyketides produced by Streptomyces formicae isolated from African Tetraponera plant-ants. Chem Sci 8:3218–3227
CAS
Article
Google Scholar
Reuther J, Gekeler C, Tiffert Y, Wohlleben W, Muth G (2006a) Unique conjugation mechanism in mycelial streptomycetes: a DNA-binding ATPase translocates unprocessed plasmid DNA at the hyphal tip. Mol Microbiol 61:436–446
CAS
Article
Google Scholar
Reuther J, Wohlleben W, Muth G (2006b) Modular architecture of the conjugative plasmid pSVH1 from Streptomyces venezuelae. Plasmid 55:201–209
CAS
Article
Google Scholar
Rose K, Steinbuchel A (2002) Construction and intergeneric conjugative transfer of a pSG5-based cosmid vector from Escherichia coli to the polyisoprene rubber degrading strain Micromonospora aurantiaca W2b. FEMS Microbiol Lett 211:129–132
CAS
Article
Google Scholar
Sepulveda E, Vogelmann J, Muth G (2011) A septal chromosome segregator protein evolved into a conjugative DNA-translocator protein. Mob Genet Elements 1:225–229
Article
Google Scholar
Servín-González L, Sampieri A, Cabello J, Galván L, Juárez V, Castro C (1995) Sequence and functional analysis of the Streptomyces phaeochromogenes plasmid pJV1 reveals a modular organization of Streptomyces plasmids that replicate by rolling circle. Microbiology 141:2499–2510
Article
Google Scholar
Shetty RP, Endy D, Knight TF Jr (2008) Engineering BioBrick vectors from BioBrick parts. J Biol Eng 2:5. https://doi.org/10.1186/1754-1611-2-5
CAS
Article
PubMed
PubMed Central
Google Scholar
Silva F, Queiroz JA, Domingues FC (2012) Evaluating metabolic stress and plasmid stability in plasmid DNA production by Escherichia coli. Biotechnol Adv 30:691–708
CAS
Article
Google Scholar
Simon R, Priefer U, Pühler A (1983) A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in gram-negative bacteria. Biotechnol 1:784–791
CAS
Article
Google Scholar
Solenberg PJ, Baltz RH (1991) Transposition of Tn5096 and other IS493 derivatives in Streptomyces griseofuscus. J Bacteriol 173:1096–1104
CAS
Article
Google Scholar
Solenberg PJ, Baltz RH (1994) Hypertransposing derivatives of the streptomycete insertion sequence IS493. Gene 147(1):47–54
CAS
Article
Google Scholar
Suzuki I, Kataoka M, Yoshida T, Seki T (2004) Lagging strand replication of rolling-circle plasmids in Streptomyces lividans: an RNA polymerase-independent primer synthesis. Arch Microbiol 181:305–313
CAS
Article
Google Scholar
Takano E, White J, Thompson CJ, Bibb MJ (1995) Construction of thiostrepton-inducible, high-copy-number expression vectors for use in Streptomyces spp. Gene 166:133–137
CAS
Article
Google Scholar
Thoma L, Muth G (2015) The conjugative DNA-transfer apparatus of Streptomyces. Int J Med Microbiol 305:224–229
CAS
Article
Google Scholar
Thoma L, Sepulveda E, Latus A, Muth G (2014) The stability region of the Streptomyces lividans plasmid pIJ101 encodes a DNA-binding protein recognizing a highly conserved short palindromic sequence motif. Front Microbiol 5:499. https://doi.org/10.3389/fmicb.2014.00499
Article
PubMed
PubMed Central
Google Scholar
Thoma L, Dobrowinski H, Finger C, Guezguez J, Linke D, Sepulveda E, Muth G (2015) A multiprotein DNA translocation complex directs intramycelial plasmid spreading during Streptomyces conjugation. MBio 6:e02559–e02514. https://doi.org/10.1128/mBio.02559-14
CAS
Article
PubMed
PubMed Central
Google Scholar
Thoma L, Vollmer B, Muth G (2016) Fluorescence microscopy of Streptomyces conjugation suggests DNA-transfer at the lateral walls and reveals the spreading of the plasmid in the recipient mycelium. Environ Microbiol 18:598–608
CAS
Article
Google Scholar
Tong Y, Charusanti P, Zhang L, Weber T, Lee SY (2015) CRISPR-Cas9 based engineering of Actinomycetal genomes. ACS Synth Biol 4:1020–1029
CAS
Article
Google Scholar
Tong Y, Robertsen HL, Blin K, Weber T, Lee SY (2018) CRISPR-Cas9 toolkit for Actinomycete genome editing. Methods Mol Biol 1671:163–184
Article
Google Scholar
Top EM, Moenne-Loccoz Y, Pembroke T, Thomas CM (2000) Phenotypic traits conferred by plasmids. In: Thomas CM (ed) The horizontal gene pool. Harwood Academic Publishers, pp 249–286
Vara J, Lewandowska-Skarbek M, Wang YG, Donadio S, Hutchinson CR (1989) Cloning of genes governing the deoxysugar portion of the erythromycin biosynthesis pathway in Saccharopolyspora erythraea (Streptomyces erythreus). J Bacteriol 171:5872–5881
CAS
Article
Google Scholar
Vogelmann J, Ammelburg M, Finger C, Guezguez J, Linke D, Flotenmeyer M, Stierhof YD, Wohlleben W, Muth G (2011a) Conjugal plasmid transfer in Streptomyces resembles bacterial chromosome segregation by FtsK/SpoIIIE. EMBO J 30:2246–2254
CAS
Article
Google Scholar
Vogelmann J, Wohlleben W, Muth G (2011b) Streptomyces conjugative elements. In: Dyson P (ed) Streptomyces—molecular biology and biotechnology. Caister Academic Press, Norfolk, pp 27–42
Google Scholar
Volff JN, Altenbuchner J (1997) High frequency transposition of the Tn5 derivative Tn5493 in Streptomyces lividans. Gene 194:81–86
CAS
Article
Google Scholar
Wang Y, Cobb RE, Zhao H (2016) High-efficiency genome editing of Streptomyces species by an engineered CRISPR/Cas system. Methods Enzymol 575:271–284
CAS
Article
Google Scholar
Wehmeier UF (1995) New multifunctional Escherichia coli-Streptomyces shuttle vectors allowing blue-white screening on XGal plates. Gene 165:149–150
CAS
Article
Google Scholar
Wohlleben W, Arnold W, Bissonnette L, Pelletier A, Tanguay A, Roy PH, Gamboa GC, Barry GF, Aubert E, Davies J, Kagan SA (1989) On the evolution of Tn21-like multiresistance transposons: sequence analysis of the gene (aacC1) for gentamicin acetyltransferase-3-I(AAC(3)-I), another member of the Tn21-based expression cassette. Mol Gen Genet 217:202–208
CAS
Article
Google Scholar
Wolf T, Gren T, Thieme E, Wibberg D, Zemke T, Puhler A, Kalinowski J (2016) Targeted genome editing in the rare actinomycete Actinoplanes sp. SE50/110 by using the CRISPR/Cas9 system. J Biotechnol 231:122–128
CAS
Article
Google Scholar
Xu Z, Wang Y, Chater KF, Ou HY, Xu HH, Deng Z, Tao M (2017) Large-scale transposition mutagenesis of Streptomyces coelicolor identifies hundreds of genes influencing antibiotic biosynthesis. Appl Environ Microbiol 83. https://doi.org/10.1128/AEM.02889-16
Zechner EL, de la Cruz F, Eisenbrandt R, Grahn AM, Koraimann G, Lanka E, Muth G, Pansegrau W, Thomas CM, Wilks M, Zatyka M (2000) Conjugative-DNA transfer processes. In: Thomas CM (ed) The horizontal gene pool. Harwood Academic Publishers, pp 87–175
Zhang MM, Wong FT, Wang Y, Luo S, Lim YH, Heng E, Yeo WL, Cobb RE, Enghiad B, Ang EL, Zhao H (2017) CRISPR-Cas9 strategy for activation of silent Streptomyces biosynthetic gene clusters. Nat Chem Biol 13:607–609. https://doi.org/10.1038/nchembio.2341
CAS
Article
Google Scholar
Zukowski MM, Miller L (1986) Hyperproduction of an intracellular heterologous protein in a sacUh mutant of Bacillus subtilis. Gene 46:247–255
CAS
Article
Google Scholar