Construction of the trimeric ectodomain of S protein of PEDV
The nucleotide sequence of S ectodomain, derived from the Taiwan G2b PEDV-PT strain (GenBank accession no. KP276252), combined with T4 bacteriophage foldon sequence of fibritin trimerization domains (Tao et al. 1997) in the C-terminal end was codon optimized (GenBank accession no. MH085496) for human cell and synthesized by Genscript Corporation (Piscataway, NJ, USA). In addition, the signal peptide of the PEDV spike protein was replaced by a tissue plasminogen activator signal peptide (tPA-SP) sequence in order to increase the protein production (Wang et al. 2011). The schematic of the construct is shown in Fig. 1. The synthetic gene was inserted into BamHI-NotI restriction sites of the pcDNA™ 3.1/V5-His TOPO® vector (Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA) according to the manufacturer’s instructions. The size of the insert and vector were confirmed by gel electrophoresis and purified using QIAquick Gel Extraction Kit (Qiagen, Chatsworth, CA, USA). Ligation was performed using T4 DNA ligase and T4 DNA Ligase Reaction Buffer (New England Biolabs, Beverly, Mass, USA) and incubated at 16 °C overnight. One Shot TOP10 chemically Competent E. coli (Invitrogen) was used for transformation following the manufacturer’s descriptions. Plasmid extraction was performed by using QIAprep® Spin Miniprep Kit (Qiagen) as manufacturer’s protocol. The plasmid was further confirmed by nucleotide sequencing (Tri-I Biotech Inc., Taipei, Taiwan).
Cell transfection to establish stable cell line expressing ectodomain of S protein of PEDV
Human embryonic kidney (HEK) 293 cells (ATCC® CRL-1573™) were transfected with the plasmid using GenJet Plus In Vitro DNA Transfection Reagent (SignaGen® Laboratories, MD, USA) according to the manufacturer’s protocol. After 48 h of transfection, the culture medium was replaced with fresh culture medium containing 750 μg/ml Geneticin (G418, Gibco, Thermo Fisher Scientific). The cells were maintained in this medium for 2 weeks to establish a cell line stably expressing the trimeric S ectodomain protein of PEDV. Expression of the S protein was detected based on immunocytochemical staining (ICC) and western blot assay using the anti-V5 antibody (Invitrogen, Thermo Fisher Scientific).
Purification of recombinant S protein
The HEK 293 cells stably expressing full-length S protein were harvested and resuspended in 350 ml of FreeStyle 293 expression medium (Gibco) and were cultured in a CELLSPIN system (INTERGRA bioscience, NH, USA) for 7 days. The supernatant was collected, centrifuged at 1000 rpm for 10 min, and passed through a 0.22-μm pore size filter. Each liter of the supernatant was added to 20 ml of HisPur Cobalt Resin (Thermo Fisher Scientific) following the manufacturer’s protocols. The eluted protein was concentrated using Vivaspin® 20 (GE Healthcare Life Sciences, Uppsala, Sweden) with 100 kDa molecular weight cutoff, added with cOmplete™ EDTA-free Protease Inhibitor Cocktail (Roche Molecular Biochemicals, Laval, Quebec, Canada) and stored at − 20 °C for subsequent use.
Properties of the recombinant S protein
Trimeric conformation and glycoprotein size confirmation of the recombinant S protein
A gradient sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) gel was casted using T-Pro EZ Gel Solution (T-Pro Biotechnology, Taiwan) as per the manufacturer’s protocol. The purified S protein samples were mixed with 4X NuPAGE® LDS Sample Buffer (Thermo Fisher Scientific) and denatured at different temperatures, with or without 10X NuPAGE® Reducing Agent (Thermo Fisher Scientific). The S protein was subjected to either one of following conditions: heating at 65 °C for 10 min without reducing agent, heating at 95 °C for 5 min without reducing agent, or heating at 95 °C for 5 min with reducing agent. For detection of N-glycosylation pattern of PEDV S glycoprotein, the S protein was digested with or without peptide N-glycosidase F (PNGase F, New England Biolabs, MA, USA) according to the manufacturer’s instructions. After electrophoresis and protein transfer, polyvinylidene difluoride (PVDF) membranes (Bio-Rad, Hercules, CA, USA) were blocked with 5% skim milk (diluted with Tris-buffered saline containing 0.05% Tween 20, TBST) for 1 h and washed with TBST. Western blotting was performed by staining with the anti-V5 antibody (1:5000 dilution in TBST buffer; Life Technologies, Novex, USA) and horseradish peroxidase-conjugated goat anti-mouse IgG (1:10000 dilution in blocking buffer; Jackson ImmunoResearch Laboratories, Philadelphia, USA) as primary and secondary antibodies, respectively. Finally, the membranes were developed using Clarity™ Western ECL Blotting Substrates (Bio-Rad) and detected by ChemiDoc™ Imaging Systems (Bio-Rad).
Bioreactivity of the recombinant S protein
The PVDF membranes used to confirm the protein size and trimeric structure of S protein were stripped using Restore™ Western Blot Stripping Buffer (Thermo Fisher Scientific) according to the manufacturer’s protocol, followed by six rounds of TBST washing. The membrane was re-probed with anti-PEDV hyperimmune serum (1:1000 dilution in TBST) and stained by horseradish peroxidase-conjugated goat anti-pig IgG (1:1000 dilution; Kirkegaard & Perry Laboratories, MD, US). Finally, the membranes were developed using Clarity™ Western ECL Blotting Substrates (Bio-Rad) and detected by ChemiDoc™ Imaging Systems (Bio-Rad).
Estimation of the molecular weight of the S glycoprotein
To estimate the protein size of PEDV S glycoprotein, native polyacrylamide gel electrophoresis using a 10% acrylamide/Bis-acrylamide (Bio-Rad) separating gel with 4% acrylamide/Bis-acrylamide stacking gel was performed. The S protein samples were mixed with 2X sample buffer, containing 25% glycerol (Sigma-Aldrich, St. Louis, Missouri, USA) and 1% bromophenol blue (Sigma-Aldrich) in 62.5 mM Tris-HCl at pH 6.8, and heated at 95 °C for 5 min. The protein electrophoresis was performed in running buffer containing 25 mM Tris and 192 mM glycine at 180 V for 4 h. After electrophoresis, the protein gel was stained with Coomassie Brilliant Blue R-250 Staining Solution (Bio-Rad) as per the manufacturer’s protocol and detected by ChemiDoc™ Imaging Systems (Bio-Rad).
Immunogenicity of the recombinant S protein
Immunization with the recombinant S protein and challenge with PEDV-PT strain
Six 5-week-old, PEDV seronegative and fecal PEDV RNA negative, large white x Duroc crossbred piglets were selected from a conventional pig farm. These piglets were randomly evenly divided into intramuscular-immunized (IM PEDV S-LTB; A1-A3, n = 3) and control (B1-B3, n = 3) groups. In the IM PEDV S-LTB group, the piglets were intramuscularly immunized with 50 μg of recombinant S protein, mixed with 10 μg of LTB (Sigma-Aldrich) (Weltzin et al. 2000) as an adjuvant (in a total volume of 1 ml), every 2 weeks (at 5, 7, and 9 weeks of age) for three times. Blood was collected from piglets at each time point of immunization and at 2 weeks after the third immunization (at 5, 7, 9, and 11 weeks of age). Plasma was stored at − 20 °C for antibody testing. After confirming the elevation of systemic PEDV-specific IgG in the S protein-immunized group, both groups of piglets were orally challenged with 5 × 105 TCID50 of PEDV-PT strain at 11 weeks of age as previously described (Chang et al. 2017). The fecal consistency was carefully monitored and recorded daily (Jung et al. 2015). Fecal swabs were collected every day for evaluation of fecal viral shedding and measurement of PEDV-specific IgA antibody titer. The animals were euthanized at 5 days postchallenge (DPC).
Antibody response of the piglets in the IM PEDV S-LTB and control groups
To evaluate the titers of PEDV-specific plasma IgG and fecal IgA, 96-well enzyme-linked immunosorbent assay (ELISA) plates coated with purified recombinant S protein (0.2 μg/well), following the manufacturer’s protocol of Coating Solution Concentrate Kit (Kirkegaard & Perry Laboratories), were used similar to a previous study (Chang et al. 2017). Twenty-fold diluted plasma and 2-fold diluted fecal samples were measured in duplicate for detection of plasma IgG and fecal IgA titers, respectively. The optical density (OD) was read at a wavelength of 405 nm by EMax Plus Microplate Reader (Molecular Devices, Crawley, UK). The result was expressed as sample to positive ratio (S/P ratio), and the cutoff value of both plasma IgG and fecal IgA detection was 0.1 (95% confidence level).
The plasma neutralizing antibody titer was measured as previously described (Chang et al. 2017). Heat-inactivated plasma samples were serially diluted 20-, 40-, 80-, 160-, and 320-fold, and consequently incubated with 500 TCID50 of PEDV-PT strain at 37 °C, 5% CO2 for 1 h. The cytopathogenic effects (CPEs) were monitored in the following 3 days. The neutralizing titer was determined as the last dilution without CPE.
Monitoring the fecal viral shedding after challenge
The feces collected from rectal swabs, ranging from 0.25 to 0.35 g, were suspended in 1 ml of PBS (Jung et al. 2015; Lin et al. 2015). RNA extraction and real-time RT-PCR were conducted to quantify the genomic equivalents (GE) in feces using SYBR® Advantage® qPCR Premix (Clontech, CA, USA) as previously described (Chang et al. 2017; Jung et al. 2014). Each reaction was confirmed by performing the melting curve assay, in which samples with a melting curve located between 84.7–86.1 °C were considered as positive. The efficiency of qPCR ranged from 90.42 to 96.92%.
Statistical analysis
The results of fecal viral shedding and plasma antibody titers were analyzed by one-way analysis of variance (ANOVA) using SAS 9.4 (Statistical Analysis System, SAS Institute Inc., Cary, NC, USA) and statistically compared by Scheffe’s method. A p value of < 0.05 was interpreted as statistically significant.