Difference of nitrogen-cycling microbes between shallow bay and deep-sea sediments in the South China Sea

  • Tiantian Yu
  • Meng Li
  • Mingyang Niu
  • Xibei Fan
  • Wenyue Liang
  • Fengping Wang
Environmental biotechnology

Abstract

In marine sediments, microorganisms are known to play important roles in nitrogen cycling; however, the composition and quantity of microbes taking part in each process of nitrogen cycling are currently unclear. In this study, two different types of marine sediment samples (shallow bay and deep-sea sediments) in the South China Sea (SCS) were selected to investigate the microbial community involved in nitrogen cycling. The abundance and composition of prokaryotes and seven key functional genes involved in five processes of the nitrogen cycle [nitrogen fixation, nitrification, denitrification, dissimilatory nitrate reduction to ammonium (DNRA), and anaerobic ammonia oxidation (anammox)] were presented. The results showed that a higher abundance of denitrifiers was detected in shallow bay sediments, while a higher abundance of microbes involved in ammonia oxidation, anammox, and DNRA was found in the deep-sea sediments. Moreover, phylogenetic differentiation of bacterial amoA, nirS, nosZ, and nrfA sequences between the two types of sediments was also presented, suggesting environmental selection of microbes with the same geochemical functions but varying physiological properties.

Keywords

Nitrogen cycling Microbes Marine sediments South China Sea Functional genes Abundance Phylogenetic differentiation 

Supplementary material

253_2017_8594_MOESM1_ESM.pdf (1.5 mb)
ESM 1(PDF 1552 kb)

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Copyright information

© Springer-Verlag GmbH Germany 2017

Authors and Affiliations

  • Tiantian Yu
    • 1
    • 2
    • 3
  • Meng Li
    • 4
  • Mingyang Niu
    • 1
    • 2
  • Xibei Fan
    • 1
    • 2
  • Wenyue Liang
    • 1
    • 2
  • Fengping Wang
    • 1
    • 2
  1. 1.State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology 3-211Shanghai Jiao Tong UniversityShanghaiChina
  2. 2.State Key Laboratory of Ocean EngineeringShanghai Jiao Tong UniversityShanghaiChina
  3. 3.College of Pharmacy and Life ScienceJiujiang UniversityJiujiangChina
  4. 4.Institute for Advanced StudyShenzhen UniversityShenzhenChina

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