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The biology and the importance of Photobacterium species

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Abstract

Photobacterium species are Gram-negative coccobacilli which are distributed in marine habitats worldwide. Some species are unique because of their capability to produce luminescence. Taxonomically, about 23 species and 2 subspecies are validated to date. Genomes from a few Photobacterium spp. have been sequenced and studied. They are considered a special group of bacteria because some species are capable of producing essential polyunsaturated fatty acids, antibacterial compounds, lipases, esterases and asparaginases. They are also used as biosensors in food and environmental monitoring and detectors of drown victim, as well as an important symbiont.

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References

  • Adachi K, Kawabata Y, Kasai H, Katsuta M, Shizuri Y (2007) Novel ngercheumicin or its salt useful for treating infection caused by Pseudovibrio denitrificans. Patent JP2007230911-A

  • Adarme-Vega TC, Lim DKY, Timmins M, Vernen F, Li Y, Schenk PM (2012) Microalgal biofactories: a promising approach towards sustainable omega-3 fatty acid production. Microb Cell Factories 11:96

    Article  CAS  Google Scholar 

  • Allen EE, Bartlett DH (2002) Structure and regulation of the omega-3 polyunsaturated fatty acid synthase genes from the deep-sea bacterium Photobacterium profundum strain SS9. Microbiology 148:1903–1913

    Article  CAS  PubMed  Google Scholar 

  • Alloush HM, Lewis RJ, Salisbury VC (2006) Bacterial bioluminescent biosensors: applications in food and environmental monitoring. Anal Lett 39:1517–1526

    Article  CAS  Google Scholar 

  • Andreoni F, Magnani M (2014) Photobacteriosis: prevention and diagnosis. J Immunol Res

  • Anzai Y, Kim H, Park JY, Wakabayashi H, Oyaizu H (2000) Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int J Syst Evol Microbiol 50:1563–1589

    Article  CAS  PubMed  Google Scholar 

  • Ast JC, Dunlap PV (2004) Phylogenetic analysis of the lux operon distinguishes two evolutionarily distinct clades of Photobacterium leiognathi. Arch Microbiol 181:352–361

    Article  CAS  PubMed  Google Scholar 

  • Ast JC, Dunlap PV (2005) Phylogenetic resolution and habitat specificity of members of the Photobacterium phosphoreum species group. Environ Microbiol 7:1641–1654

    Article  CAS  PubMed  Google Scholar 

  • Ast JC, Cleenwerck I, Engelbeen K, Urbanczyk H, Thompsom FL, De Vos P, Dunlap PV (2007a) Photobacterium kishitanii sp. nov., a luminous marine bacterium symbiotic with deep-sea fishes. Int J Syst Evol Microbiol 57:2073–2078

    Article  CAS  PubMed  Google Scholar 

  • Ast JC, Urbanczyk H, Dunlap PV (2007b) Natural merodiploidy of the lux-rib operon of Photobacterium leiognathi from coastal waters of Honshu, Japan. J Bacteriol 189:6148–6158

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ast JC, Urbanczyk H, Dunlap PV (2009) Multi-gene analysis reveals previously unrecognized phylogenetic diversity in Aliivibrio. Syst Appl Microbiol 32:379–386

    Article  PubMed  Google Scholar 

  • Barnes A, dos Santos N, Ellis A (2005) Update on bacterial vaccines: Photobacterium damselae subsp. piscicida. Dev Biol (Basel) 121:75–84

    CAS  Google Scholar 

  • Baumann P, Baumann L (1981) The marine Gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas, and Alcaligenes. In: Starr MP, Stolp H, Truper HG, Balows A, Schlegel HG (eds) The prokaryotes: a handbook on habitats, isolation and identification of bacteria—volume II. Springer-Verlag, Berlin, pp 1302–1331

    Google Scholar 

  • Beijerinck M (1889) Le Photobacterium luminosum, bactérie lumineuse de la Mer du Nord. Arch Neerl Sci Exactes Nat 23:401–427

    Google Scholar 

  • Bérdy J (2005) Bioactive microbial metabolites. J Antibiot 58(1):1–26

    Article  PubMed  Google Scholar 

  • Boettcher K, Ruby E (1995) Detection and quantification of Vibrio fischeri autoinducer from symbiotic squid light organs. J Bacteriol 177:1053–1058

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Brenner DJ, Krieg NR, Staley JT (2005) Part B the Gammaproteobacteria. In: Bergey’s manual of systematic bacteriology, 2nd edn. Springer, New York, pp 546–552

    Google Scholar 

  • Campanaro S, Vezzi A, Vitulo N, Lauro FM, D’Angelo M, Simonato F, Cestaro A, Malacrida G, Bertoloni G, Valle G, Bartlett DH (2005) Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains. BMC Genomics 6:122

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Chimetto LA, Cleenwerck I, Thompson CC, Brocchi M, Willems A, De Vos P, Thompson FL (2010) Photobacterium jeanii sp. nov., isolated from corals and zoanthids. Int J Syst Evol Microbiol 60:2843–2848

    Article  CAS  PubMed  Google Scholar 

  • Choudhury P, Bhunia B (2015) Industrial application of lipase: a review. Biopharm J 1:41–47

    Google Scholar 

  • Clardy J, Fischbach MA, Walsh CT (2006) New antibiotics from bacterial natural products. Nat Biotechnol 24:1541–1550

    Article  CAS  PubMed  Google Scholar 

  • Clatworthy AE, Pierson E, Hung DT (2007) Targeting virulence: a new paradigm for antimicrobial therapy. Nat Chem Biol 3:541–548

    Article  CAS  PubMed  Google Scholar 

  • Costa-Ramos C, do Vale A, Ludovico P, dos Santos NMS, Silva MT (2011) The bacterial exotoxin AIP56 induces fish macrophage and neutrophil apoptosis using mechanisms of the extrinsic and intrinsic pathways. Fish Shellfish Immunol 30:173–181

    Article  CAS  PubMed  Google Scholar 

  • Cutter DL, Kreger AS (1990) Cloning and expression of the damselysin gene from Vibrio damsela. Infect Immun 58:266–268

  • Deep K, Poddar A, Das SK (2014) Photobacterium panuliri sp. nov., an alkalitolerant marine bacterium isolated from eggs of spiny lobster, Panulirus penicillatus from Andaman Sea. Curr Microbiol 69:660–668

    Article  CAS  PubMed  Google Scholar 

  • Desriac F, Jégou C, Balnois E, Brillet B, Chevalier P, Fleury Y (2013) Antimicrobial peptides from marine Proteobacteria. Mar Drugs 11:3632–3660

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Do Vale A, Silva MT, Dos Santos NMS, Nascimento DS, Reis-Rodrigues P, Costa-Ramos C, Ellis AE, Azevedo JE (2005) AIP56, a novel plasmid-encoded virulence factor of Photobacterium damselae subsp. piscicida with apoptogenic activity against sea bass macrophages and neutrophils. Mol Microbiol 58:1025–1038

    Article  CAS  PubMed  Google Scholar 

  • Dunlap PV (1985) Osmotic control of luminescence and growth in Photobacterium leiognathi from ponyfish light organs. Arch Microbiol 141:44–50

    Article  CAS  PubMed  Google Scholar 

  • Dunlap P (2014) Biochemistry and genetics of bacterial bioluminescence. In Biolumin Fundam Appl Biotechnol Vol I, Springer Berlin Heidelberg, Berlin, Heidelberg, pp 37–64

  • Dunlap PV, Kita-Tsukamoto K (2006) Luminous bacteria. In: The prokaryotes. Springer, New York, pp 863–892

    Chapter  Google Scholar 

  • Dunlap PV, Urbanczyk H (2013) Luminous Bacteria. In: The prokaryotes. Springer, Berlin Heidelberg, pp 495–528

    Chapter  Google Scholar 

  • Dunlap PV, Jiemjit A, Ast JC, Pearce MM, Marques RR, Lavilla-Pitogo CR (2004) Genomic polymorphism in symbiotic populations of Photobacterium leiognathi. Environ Microbiol 6:145–158

    Article  CAS  PubMed  Google Scholar 

  • Dunlap PV, Kojima Y, Nakamura S, Nakamura M (2009) Inception of formation and early morphogenesis of the bacterial light organ of the sea urchin cardinalfish, Siphamia versicolor. Mar Biol 156:2011–2020

    Article  Google Scholar 

  • Egan ES, Fogel MA, Waldor MK (2005) MicroReview: divided genomes: negotiating the cell cycle in prokaryotes with multiple chromosomes. Mol Microbiol 56:1129–1138

    Article  CAS  PubMed  Google Scholar 

  • Elgendy MY, Abdelsalam M, Moustafa M, Kenawy AM, and Seida A (2015) Caligus elongatus and Photobacterium damselae subsp piscicida concomitant infections affecting broodstock European seabass, Dicentrarchus labrax, with special reference to histopathological responses. J Aquac Res Dev

  • Fang J, Kato C (2007) FAS or PKS, lipid biosynthesis and stable carbon isotope fractionation in deep-sea piezophilic bacteria. Commun Curr Res Educ Top Trends Appl Microbiol 190–200

  • Fang J, Barcelona MJ, Abrajano T, Nogi Y, Kato C (2002) Isotopic composition of fatty acids of extremely piezophilic bacteria from the Mariana Trench at 11,000 m. Mar Chem 80:1–9

    Article  CAS  Google Scholar 

  • Farmer Iii JJ, Hickman-Brenner FW (2006) The genera Vibrio and Photobacterium. In: The prokaryotes. Springer, New York, pp 508–563

    Chapter  Google Scholar 

  • Freese E, Rütters H, Köster J, Rullkötter J, Sass H (2009) Gammaproteobacteria as a possible source of eicosapentaenoic acid in anoxic intertidal sediments. Microb Ecol 57:444–454

    Article  CAS  PubMed  Google Scholar 

  • Gauthier G, Lafay B, Ruimy R, Breittmayer V, Nicolas JL, Gauthier M, Christen R (1995) Small-subunit rRNA sequences and whole DNA relatedness concur for the reassignment of Pasteurella piscicida (Snieszko et al.) Janssen and Surgalla to the genus Photobacterium as Photobacterium damsela subsp. piscicida comb. nov. Int J Syst Bacteriol 45:139–144

  • Gerday C, Aittaleb M, Bentahir M, Chessa J-P, Claverie P, Collins T, D’Amico S, Dumont J, Garsoux G, Georlette D, Hoyoux A, Lonhienne T, Meuwis M-A, Feller G (2000) Cold-adapted enzymes: from fundamentals to biotechnology. Trends Biotechnol 18:103–107

    Article  CAS  PubMed  Google Scholar 

  • Gomez-Gil B, Roque A, Rotllant G, Peinado L, Romalde JL, Doce A, Cabanillas-Beltrán H, Chimetto LA, Thompson FL (2011) Photobacterium swingsii sp. nov., isolated from marine organisms. Int J Syst Evol Microbiol 61:315–319

    Article  CAS  PubMed  Google Scholar 

  • Gomez-Gil B, Roque A, Rotllant G, Romalde JL, Doce A, Eggermont M, Defoirdt T (2016) Photobacterium sanguinicancri sp. nov. isolated from marine animals. Antonie Van Leeuwenhoek 109:817–825

    Article  CAS  PubMed  Google Scholar 

  • Goodell KH, Jordan MR, Graham R, Cassidy C, Nasraway SA (2004) Rapidly advancing necrotizing fasciitis caused by Photobacterium (Vibrio) damsela: a hyperaggressive variant. Crit Care Med 32:278–281

    Article  PubMed  Google Scholar 

  • Gray LD, Kreger AS (1985) Purification and characterization of an extracellular cytolysin produced by Vibrio vulnificus. Infect Immun 48:62–72

    CAS  PubMed  PubMed Central  Google Scholar 

  • Han JY, Kim HK (2011) Transesterification using the cross-linked enzyme aggregate of Photobacterium lipolyticum lipase M37. J Microbiol Biotechnol 21:1159–1165

    Article  CAS  PubMed  Google Scholar 

  • Hasan F, Shah AA, Hameed A (2006) Industrial applications of microbial lipases. Enzym Microb Technol 39:235–251

    Article  CAS  Google Scholar 

  • Hastings JW, Nealson KH (1981) The symbiotic luminous bacteria. In: Starr IM, Stolp H, Trüper H, Balows A, Schlegel H (eds) The prokaryotes. A handbook on habitats, isolation, and identification of bacteria. Springer-Verlag, Berlin, pp 1322–1345

    Google Scholar 

  • Hendrie M, Hodgkiss W, Shewan J (1970) The identification, taxonomy and classification of luminous bacteria. Microbiology 62:151–169

  • Ho LP, Han-You Lin J, Liu HC, Chen HE, Chen TY, Yang HL (2011) Identification of antigens for the development of a subunit vaccine against Photobacterium damselae ssp. piscicida. Fish Shellfish Immunol 30:412–419

  • Hou YH, Li FC, Wang SJ, Qin S, Wang QF (2008) Intergeneric conjugation in holomycin-producing marine Streptomyces sp. strain M095. Microbiol Res 163:96–104

    Article  CAS  PubMed  Google Scholar 

  • Hundenborn J, Thurig S, Kommerell M, Haag H, Nolte O, Nolte O (2013) Severe wound infection with Photobacterium damselae ssp. damselae and Vibrio harveyi, following a laceration injury in marine environment: a case report and review of the literature. Case Rep Med 2013:610632

  • Johnson BT (2005) Microtox® acute toxicity test. In: Small-scale freshwater toxicity investigations. Springer-Verlag, Berlin, pp 69–105

  • Jones BW, Nishiguchi MK (2004) Counterillumination in the Hawaiian bobtail squid, Euprymna scolopes berry (Mollusca: Cephalopoda). Mar Biol 144:1151–1155

    Article  Google Scholar 

  • Joseph B, Ramteke PW, Thomas G (2008) Cold active microbial lipases: some hot issues and recent developments. Biotechnol Adv 26:457–470

    Article  CAS  PubMed  Google Scholar 

  • Jung SY, Jung YT, Oh TK, Yoon JH (2007) Photobacterium lutimaris sp. nov., isolated from a tidal flat sediment in Korea. Int J Syst Evol Microbiol 57:332–336

  • Kaeding AJ, Ast JC, Pearce MM, Urbanczyk H, Kimura S, Endo H, Nakamura M, Dunlap PV (2007) Phylogenetic diversity and cosymbiosis in the bioluminescent symbioses of Photobacterium mandapamensis. Appl Environ Microbiol 73:3173–3182

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kakizaki E, Takahama K, Seo Y, Kozawa S, Sakai M, Yukawa N (2008) Marine bacteria comprise a possible indicator of drowning in seawater. Forensic Sci Int 176:236–247

    Article  PubMed  Google Scholar 

  • Kakizaki E, Kozawa S, Sakai M, Yukawa N (2009) Bioluminescent bacteria have potential as a marker of drowning in seawater: two immersed cadavers retrieved near estuaries. Legal Med 11(2):91–96

  • Kakizaki E, Kozawa S, Imamura N, Uchiyama T, Nishida S, Sakai M, Yukawa N (2011) Detection of marine and freshwater bacterioplankton in immersed victims: post-mortem bacterial invasion does not readily occur. Forensic Sci Int 211:9–18

    Article  PubMed  Google Scholar 

  • Kakizaki E, Ogura Y, Kozawa S, Nishida S, Uchiyama T, Hayashi T, Yukawa N (2012) Detection of diverse aquatic microbes in blood and organs of drowning victims: first metagenomic approach using high-throughput 454-pyrosequencing. Forensic Sci Int 220:135–146

    Article  CAS  PubMed  Google Scholar 

  • Kato C, Bartlett DH (1997) The molecular biology of barophilic bacteria. Extremophiles 1:111–116

    Article  CAS  PubMed  Google Scholar 

  • Kim YO, Kim KK, Park S, Kang SJ, Lee JH, Lee SJ, Oh TK, Yoon JH (2010) Photobacterium gaetbulicola sp. nov., a lipolytic bacterium isolated from a tidal flat sediment. Int J Syst Evol Microbiol 60:2587–2591

  • Kimura B, Hokimoto S, Takahashi H, Fujii T (2000) Photobacterium histaminum Okuzumi et al. 1994 is a later subjective synonym of Photobacterium damselae subsp. damselae (Love et al. 1981) Smith et al. 1991. Int J Syst Evol Microbiol 50:1339–1342

  • Kreger AS (1984) Cytolytic activity and virulence of Vibrio damsela. Infect Immun 44:326–331

  • Kreger AS, Bernheimer AW, Etkin LA, Daniel LW (1987) Phospholipase D activity of Vibrio damsela cytolysin and its interaction with sheep erythrocytes. Infect Immun 55:3209–3212

  • Labella A, Berbel C, Manchado M, Castro D, Borrego JJ (2011) Photobacterium damselae subsp. damselae, an emerging pathogen affecting new cultured marine fish species in Southern Spain. In: Aral F (ed) Recent Advances in Fish farms. InTech, pp 136–152

  • Lauro FM, McDougald D, Thomas T, Williams TJ, Egan S, Rice S, DeMaere MZ, Ting L, Ertan H, Johnson J, Ferriera S, Lapidus A, Anderson I, Kyrpides N, Munk AC, Detter C, Han CS, Brown MV, Robb FT, Kjelleberg S, Cavicchioli R (2009) The genomic basis of trophic strategy in marine bacteria. Proc Natl Acad Sci U S A 106:15527–15533

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lauro FM, Eloe-Fadrosh EA, Richter TKS, Vitulo N, Ferriera S, Johnson JH, Bartlett DH (2014) Ecotype diversity and conversion in Photobacterium profundum strains. PLoS One 9:1–10

    Article  CAS  Google Scholar 

  • Lee K, Ruby E (1994) Effect of the squid host on the abundance and distribution of symbiotic Vibrio fischeri in nature. Appl Environ Microbiol 60:1565–1571

    CAS  PubMed  PubMed Central  Google Scholar 

  • Li XL, Zhang WH, Wang YD, Dai YJ, Zhang HT, Wang Y, Wang HK, Lu FP (2014) A high-detergent-performance, cold-adapted lipase from Pseudomonas stutzeri PS59 suitable for detergent formulation. J Mol Catal B Enzym 102:16–24

    Article  CAS  Google Scholar 

  • Lin JW, Chao YF, Weng SF (2001) Riboflavin synthesis genes ribE, ribB, ribH, ribA reside in the lux operon of Photobacterium leiognathi. Biochem Biophys Res Commun 284:587–595

    Article  CAS  PubMed  Google Scholar 

  • Liu Y, Liu L-Z, Song L, Zhou Y-G, Qi F-J, Liu Z-P (2014) Photobacterium aquae sp. nov., isolated from a recirculating mariculture system. Int J Syst Evol Microbiol 64:475–480

  • Liu F, Liu G, Li F (2016) Characterization of two pathogenic Photobacterium strains isolated from Exopalaemon carinicauda causing mortality of shrimp. Aquaculture 464:129–135

    Article  Google Scholar 

  • Lo N, Jin HM, Jeon CO (2014) Photobacterium aestuarii sp. nov., a marine bacterium isolated from a tidal flat. Int J Syst Evol Microbiol 64:625–630

  • Lucena T, Ruvira MA, Pascual J, Garay E, Carmen Macián M, Arahal DR, Pujalte MJ (2011) Photobacterium aphoticum sp. nov., isolated from coastal water. Int J Syst Evol Microbiol 61:1579–1584

    Article  CAS  PubMed  Google Scholar 

  • Malave-Orengo J, Rubio-Marrero EN, Rios-Velazquez C (2010) Isolation and characterization of bioluminescent bacteria from marine environments of Puerto Rico. Appl Microbiol Microb Biotechnol 1:103–108

  • Maila MP, Cloete TE (2005) The use of biological activities to monitor the removal of fuel contaminants—perspective for monitoring hydrocarbon contamination: a review. Int Biodeterior Biodegrad 55(1):1–8

    Article  CAS  Google Scholar 

  • Mansson M, Gram L, Larsen TO (2011a) Production of bioactive secondary metabolites by marine Vibrionaceae. Mar Drugs 9:1440–1468

  • Mansson M, Nielsen A, Kjærulff L, Gotfredsen C, Wietz M, Ingmer H, Gram L, Larsen T (2011b) Inhibition of virulence gene expression in Staphylococcus aureus by novel depsipeptides from a marine Photobacterium. Mar Drugs 9:2537–2552

  • Martini S, Al Ali B, Garel M, Nerini D, Grossi V, Pacton M, Casalot L, Cuny P, Tamburini C (2013) Effects of hydrostatic pressure on growth and luminescence of a moderately-piezophilic luminous bacteria Photobacterium phosphoreum ANT-2200. PLoS One 8:1–9

  • Mathew DC, Mathew GM, Gicana RG, Huang C-C (2015) Genome sequence of Photobacterium halotolerans MELD1, with mercury reductase (merA), isolated from Phragmites australis. Genome Announc 3:e00530–e00515

    Article  PubMed  PubMed Central  Google Scholar 

  • Moreira APB, Duytschaever G, Chimetto Tonon LA, Fróes AM, de Oliveira LS, Amado Filho G, Francini-Filho RB, De Vos P, Swings J, Thompson CC, Thompson FL (2014) Photobacterium sanctipauli sp. nov. isolated from bleached Madracis decactis (Scleractinia) in the St Peter and St Paul Archipelago, Mid-Atlantic Ridge, Brazil. PeerJ 2:e427

  • Morii H, Hayashi N, Uramoto K (2003) Cloning and nucleotide sequence analysis of the chloramphenicol resistance gene on conjugative R plasmids from the fish pathogen Photobacterium damselae subsp. piscicida. Dis Aquat Org 53:107–113

  • Morii H, Bharadwaj MS, Eto N (2004) Cloning and nucleotide sequence analysis of the ampicillin resistance gene on a conjugative R plasmid from the fish pathogen Photobacterium damselae subsp. piscicida. J Aquat Anim Health 16:197–207

    Article  Google Scholar 

  • Morris JG, Wilson R, Hollis DG, Weaver RE, Miller HG, Tacket CO, Hickman FW, Blake PA (1982) Illness caused by Vibrio damsela and Vibrio hollisae. Lancet 319:1294–1297

    Article  Google Scholar 

  • Nielsen A, Månsson M, Bojer MS, Gram L, Larsen TO, Novick RP, Frees D, Frøkiaer H, Ingmer H, Kaufmann GF (2014) Solonamide B inhibits quorum sensing and reduces Staphylococcus aureus mediated killing of human neutrophils. PLoS One 9:e84992

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Nijvipakul S, Wongratana J, Suadee C, Entsch B, Ballou DP, Chaiyen P (2008) LuxG is a functioning flavin reductase for bacterial luminescence. J Bacteriol 190:1531–1538

    Article  CAS  PubMed  Google Scholar 

  • Nogi Y, Masui N, Kato C (1998) Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment. Extremophiles 2:1–7

    Article  CAS  PubMed  Google Scholar 

  • Nonaka L, Maruyama F, Miyamoto M, Miyakoshi M, Kurokawa K, Masuda M (2012) Novel conjugative transferable multiple drug resistance plasmid pAQU1 from Photobacterium damselae subsp. damselae isolated from marine aquaculture environment. Microbes Environ 27:263–272

    Article  PubMed  PubMed Central  Google Scholar 

  • Nunes-Halldorson VDS, Duran NL (2003) Bioluminescent bacteria: lux genes as environmental biosensors. Braz J Microbiol 34:91–96

  • Nyholm SV, Stabb EV, Ruby EG, McFall-Ngai MJ (2000) Establishment of an animal-bacterial association: recruiting symbiotic Vibrios from the environment. Proc Natl Acad Sci U S A 97:10231–10235

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Okada K, Iida T, Kita-Tsukamoto K, Honda T (2005) Vibrios commonly possess two chromosomes. J Bacteriol 187:752–757

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Oku N, Kawabata K, Adachi K, Katsuta A, Shizuri Y (2008) Unnarmicins A and C, new antibacterial depsipeptides produced by marine bacterium Photobacterium sp. MBIC06485. J Antibiot 61:11–17

    Article  CAS  PubMed  Google Scholar 

  • Okuzumi M, Hiraishi A, Kobayashi T, Fujii T (1994) Photobacterium histaminum sp. nov., a histamine-producing marine bacterium. Int J Syst Bacteriol 44:631–636

  • Oliva B, O’Neill A, Wilson JM, O’Hanlon PJ, Chopra I (2001) Antimicrobial properties and mode of action of the pyrrothine holomycin. Antimicrob Agents Chemother 45:532–539

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Onarheim AM, Wiik R, Burghardt J, Stackebrandt E (1994) Characterization and identification of two Vibrio species indigenous to the intestine of fish in cold sea water; description of Vibrio iliopiscarius sp. nov. Syst Appl Microbiol 17(3):370–379

    Article  Google Scholar 

  • Onwurah INE, Ogugua VN, Onyike NB, Ochonogor AE, Otitoju OF (2007) Crude oil spills in the environment, effects and some innovative clean-up biotechnologies. Int J Environ Res 1:307–320

    CAS  Google Scholar 

  • Orikasa Y, Nishida T, Yamada A, Yu R, Watanabe K, Hase A, Morita N, Okuyama H (2006) Recombinant production of docosahexaenoic acid in a polyketide biosynthesis mode in Escherichia coli. Biotechnol Lett 28:1841–1847

    Article  CAS  PubMed  Google Scholar 

  • Orikasa Y, Tanaka M, Sugihara S, Hori R, Nishida T, Ueno A, Morita N, Yano Y, Yamamoto K, Shibahara A, Hayashi H, Yamada Y, Yamada A, Yu R, Watanabe K, Okuyama H (2009) pfaB products determine the molecular species produced in bacterial polyunsaturated fatty acid biosynthesis. FEMS Microbiol Lett 295:170–176

    Article  CAS  PubMed  Google Scholar 

  • Osorio CR, Juiz-Río S, Lemos ML (2006) A siderophore biosynthesis gene cluster from the fish pathogen Photobacterium damselae subsp. piscicida is structurally and functionally related to the Yersinia high-pathogenicity island. Microbiology 152:3327–3341

    Article  CAS  PubMed  Google Scholar 

  • Osorio CR, Marrero J, Wozniak RAF, Lemos ML, Burrus V, Waldor MK (2008) Genomic and functional analysis of ICEPdaSpa1, a fish-pathogen-derived SXT-related integrating conjugative element that can mobilize a virulence plasmid. J Bacteriol 190:3353–3361

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Osorio CR, Rivas AJ, Balado M, Fuentes-Monteverde JC, Rodríguez J, Jiménez C, Lemos ML, Waldor MK (2015) A transmissible plasmid-borne pathogenicity island confers piscibactin biosynthesis in the fish pathogen Photobacterium damselae subsp. piscicida. Appl Environ Microbiol 81:5867–5879

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Panda T, Gowrishankar BS (2005) Production and applications of esterases. Appl Microbiol Biotechnol 67:160–169

    Article  CAS  PubMed  Google Scholar 

  • Park YD, Baik KS, Seong CN, Bae KS, Kim S, Chun J (2006) Photobacterium ganghwense sp. nov., a halophilic bacterium isolated from sea water. Int J Syst Evol Microbiol 56:745–749

  • Phillips T, Liu D, Seech A, Lee H (2000) Monitoring bioremediation in creosote-contaminated soils using chemical analysis and toxicity tests. J Ind Microbiol Biotechnol 24:132–139

    Article  CAS  Google Scholar 

  • Queck SY, Jameson-Lee M, Villaruz AE, Bach THL, Khan BA, Sturdevant DE, Ricklefs SM, Li M, Otto M (2008) RNAIII-independent target gene control by the agr quorum-sensing system: insight into the evolution of virulence regulation in Staphylococcus aureus. Mol Cell 32:150–158

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Raatz SK, Rosenberger TA, Johnson LK, Wolters WW, Burr GS, Picklo MJ (2013) Dose-dependent consumption of farmed atlantic salmon (Salmo salar) increases plasma phospholipid n-3 fatty acids differentially. J Acad Nutr Diet 113:282–287

    Article  PubMed  PubMed Central  Google Scholar 

  • Reen FJ, Almagro-Moreno S, Ussery D, Boyd EF (2006) The genomic code: inferring Vibrionaceae niche specialization. Nat Rev Microbiol 4:697–704

    Article  CAS  PubMed  Google Scholar 

  • Reichelt JL, Baumann P (1973) Taxonomy of the marine, luminous bacteria. Arch fur Mikrobiol 94:283–330

    Article  Google Scholar 

  • Reichelt JL, Baumann P, Baumann L (1976) Study of genetic relationships among marine species of the genera Beneckea and Photobacterium by means of in vitro DNA/DNA hybridization. Arch Microbiol 110:101–120

  • Richards GP, Watson MA, Crane EJ, Burt IG, Bushek D (2008) Shewanella and Photobacterium spp. in oysters and seawater from the Delaware Bay. Appl Environ Microbiol 74:3323–3327

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rivas R, García-Fraile P, Mateos PF, Martínez-Molina E, Velázquez E (2006) Photobacterium halotolerans sp. nov., isolated from Lake Martel in Spain. Int J Syst Evol Microbiol 56:1067–1071

    Article  CAS  PubMed  Google Scholar 

  • Rivas AJ, Balado M, Lemos ML, Osorio CR (2011) The Photobacterium damselae subsp. damselae hemolysins damselysin and HlyA are encoded within a new virulence plasmid. Infect Immun 79:4617–4627

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rivas AJ, Balado M, Lemos ML, Osorio CR (2013a) Synergistic and additive effects of chromosomal and plasmid-encoded hemolysins contribute to hemolysis and virulence in Photobacterium damselae subsp. damselae. Infect Immun 81:3287–3299

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rivas AJ, Lemos ML, Osorio CR (2013b) Photobacterium damselae subsp. damselae, a bacterium pathogenic for marine animals and humans. Front Microbiol 4:1–6

    Article  Google Scholar 

  • Romalde JL (2002) Photobacterium damselae subsp. piscicida: an integrated view of a bacterial fish pathogen. Int Microbiol 5:3–9

  • Roslan NN, Sabri S, Oslan SN, Baharum SN, Leow TC (2016) Complete genome sequence of Photobacterium sp. strain J15, isolated from seawater of southwestern Johor, Malaysia. Genome Announc 4:e00739–e00716

  • Ruby EG, Greenberg EP, Hastings JW (1980) Planktonic marine luminous bacteria: species distribution in the water column. Appl Environ Microbiol 39:302–306

    CAS  PubMed  PubMed Central  Google Scholar 

  • Ruby EG, Urbanowski M, Campbell J, Dunn A, Faini M, Gunsalus R, Lostroh P, Lupp C, McCann J, Millikan D, Schaefer A, Stabb E, Stevens A, Visick K, Whistler C, Greenberg EP (2005) Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners. Proc Natl Acad Sci U S A 102:3004–3009

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ryu HS, Kim HK, Choi WC, Kim MH, Park SY, Han NS, Oh TK, Lee JK (2006) New cold-adapted lipase from Photobacterium lipolyticum sp. nov. that is closely related to filamentous fungal lipases. Appl Microbiol Biotechnol 70:321–326

    Article  CAS  PubMed  Google Scholar 

  • Sasaki A, Ikejima K, Aoki S, Azuma N, Kashimura N, Wada M (2003) Field evidence for bioluminescent signaling in the pony fish, Leiognathus elongatus. Environ Biol Fish 66:307–311

    Article  Google Scholar 

  • Sato K, Chino D, Kobayashi T, Obara K, Miyauchi S, Tanaka Y (2013) Selective and potent inhibitory effect of docosahexaenoic acid (DHA) on U46619-induced contraction in rat aorta. J Smooth Muscle Res 49:63–77

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Seo HJ, Bae SS, Lee JH, Kim SJ (2005a) Photobacterium frigidiphilum sp. nov., a psychrophilic, lipolytic bacterium isolated from deep-sea sediments of Edison Seamount. Int J Syst Evol Microbiol 55:1661–1666

    Article  CAS  PubMed  Google Scholar 

  • Seo HJ, Bae SS, Yang SH, Lee JH, Kim SJ (2005b) Photobacterium aplysiae sp. nov., a lipolytic marine bacterium isolated from eggs of the sea hare Aplysia kurodai. Int J Syst Evol Microbiol 55:2293–2296

    Article  CAS  PubMed  Google Scholar 

  • Shakiba MH, Ali MSM, Rahman RNZRA, Salleh AB, Leow TC (2016) Cloning, expression and characterization of a novel cold-adapted GDSL family esterase from Photobacterium sp. strain J15. Extremophiles 20:45–55

    Article  CAS  Google Scholar 

  • Shen W, Zhu N, Cui J, Wang H, Dang Z, Wu P, Luo Y, Shi C (2016) Ecotoxicity monitoring and bioindicator screening of oil-contaminated soil during bioremediation. Ecotoxicol Environ Saf 124:120–128

    Article  CAS  PubMed  Google Scholar 

  • Shin JH, Shin MG, Suh SP, Ryang DW, Rew JS, Nolte FS (1996) Primary Vibrio damsela septicemia. Clinical Infect Dis 22:856–857

  • Silva DS, Pereira LMG, Moreira AR, Ferreira-da-Silva F, Brito RM, Faria TQ, Zornetta I, Montecucco C, Oliveira P, Azevedo JE, Pereira PJB, Macedo-Ribeiro S, do Vale A, dos NMS S (2013) The apoptogenic toxin AIP56 is a metalloprotease A-B toxin that cleaves NF-κb P65. PLoS Pathog 9:e1003128

    Article  PubMed  PubMed Central  Google Scholar 

  • Souto A, Montaos MA, Rivas AJ, Balado M, Osorio CR, Rodríguez J, Lemos ML, Jiménez C (2012) Structure and biosynthetic assembly of piscibactin, a siderophore from Photobacterium damselae subsp. piscicida, predicted from genome analysis. European J Org Chem 5693–5700

  • Sparks JS, Dunlap PV, Smith WL (2005) Evolution and diversification of a sexually dimorphic luminescent system in ponyfishes (Teleostei: Leiognathidae), including diagnoses for two new genera. Cladistics 21:305–327

    Article  Google Scholar 

  • Srinivas TNR, Vijaya Bhaskar Y, Bhumika V, Anil Kumar P (2013) Photobacterium marinum sp. nov., a marine bacterium isolated from a sediment sample from Palk Bay, India. Syst Appl Microbiol 36:160–165

  • Steinberg SM, Poziomek EJ, Engelmann WH, Rogers KR (1995) A review of environmental applications of bioluminescence measurements. Chemosphere 30:2155–2197

    Article  CAS  Google Scholar 

  • Sudheesh PS, Al-Ghabshi A, Al-Mazrooei N, Al-Habsi S, Sudheesh PS, Al-Ghabshi A, Al-Mazrooei N, Al-Habsi S (2012) Comparative pathogenomics of bacteria causing infectious diseases in fish. Int J Evol Biol 2012:1–16

    Article  Google Scholar 

  • Suzuki A, Goto M (1973) Photolumazines, new naturally occurring inhibitors of riboflavin synthetase. Biochim Biophys Acta 313:229–234

    Article  CAS  PubMed  Google Scholar 

  • Terceti MS, Ogut H, Osorio CR (2016) Photobacterium damselae subsp. damselae, an emerging fish pathogen in the black sea: evidence of a multiclonal origin. Appl Environ Microbiol 82:3736–3745

  • Thompson FL, Thompson CC, Naser S, Hoste B, Vandemeulebroecke K, Munn C, Bourne D, Swings J (2005) Photobacterium rosenbergii sp. nov. and Enterovibrio coralii sp. nov., Vibrios associated with coral bleaching. Int J Syst Evol Microbiol 55:913–917

    Article  CAS  PubMed  Google Scholar 

  • Tilay A, Annapure U (2012) Novel simplified and rapid method for screening and isolation of polyunsaturated fatty acids producing marine bacteria. Biotechnol Res Int 2012:1–8

    Article  CAS  Google Scholar 

  • Tindall BJ, Rosselló-Móra R, Busse HJ, Ludwig W, Kämpfer P (2010) Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60:249–266

    Article  CAS  PubMed  Google Scholar 

  • Uchiyama T, Kakizaki E, Kozawa S, Nishida S, Imamura N, Yukawa N (2012) A new molecular approach to help conclude drowning as a cause of death: Simultaneous detection of eight bacterioplankton species using real-time PCR assays with TaqMan probes. Forensic Sci Int 222:11–26

    Article  CAS  PubMed  Google Scholar 

  • Urakawa H, Kita-Tsukamoto K, Ohwada K (1999) Reassessment of the taxonomic position of Vibrio iliopiscarius (Onarheim et al. 1994) and proposal for Photobacterium iliopiscarium comb. nov. Int J Syst Bacteriol 49:257–260

    Article  PubMed  Google Scholar 

  • Urbanczyk H, Ast JC, Higgins MJ, Carson J, Dunlap PV (2007) Reclassification of Vibrio fischeri, Vibrio logei, Vibrio salmonicida and Vibrio wodanis as Aliivibrio fischeri gen. nov., comb. nov., Aliivibrio logei comb. nov., Aliivibrio salmonicida comb. nov. and Aliivibrio wodanis comb. nov. Int J Syst Evol Microbiol 57:2823–2829

  • Urbanczyk H, Ast JC, Dunlap PV (2011a) Phylogeny, genomics, and symbiosis of Photobacterium. FEMS Microbiol Rev 35:324–342

    Article  CAS  PubMed  Google Scholar 

  • Urbanczyk H, Ogura Y, Hendry TA, Gould AL, Kiwaki N, Atkinson JT, Hayashi T, Dunlap PV (2011b) Genome sequence of Photobacterium mandapamensis strain svers.1.1, the bioluminescent symbiont of the cardinal fish Siphamia versicolor. J Bacteriol 193:3144–3145

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Vezzi A, Campanaro S, D’Angelo M, Simonato F, Vitulo N, Lauro FM, Cestaro A, Malacrida G, Simionati B, Cannata N, Romualdi C, Bartlett DH, Valle G (2005) Life at depth: Photobacterium profundum genome sequence and expression analysis. Science 307:1459–1461

    Article  CAS  PubMed  Google Scholar 

  • Wang R, Feng J, Su Y, Ye L, Wang J (2013) Studies on the isolation of Photobacterium damselae subsp. piscicida from diseased golden pompano (Trachinotus ovatus Linnaeus) and antibacterial agents sensitivity. Vet Microbiol 162:957–963

    Article  CAS  PubMed  Google Scholar 

  • Wietz M, Mansson M, Gotfredsen CH, Larsen TO, Gram L (2010) Antibacterial compounds from marine Vibrionaceae isolated on a global expedition. Mar Drugs 8:2946–2960

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xie CH, Yokota A (2004) Transfer of Hyphomicrobium indicum to the genus Photobacterium as Photobacterium indicum comb. nov. Int J Syst Evol Microbiol 54:2113–2116

    Article  CAS  PubMed  Google Scholar 

  • Yaacob MA, Hasan WANW, Ali MSM, Rahman RNZRA, Salleh AB, Basri M, Leow TC (2014) Characterisation and molecular dynamic simulations of J15 asparaginase from Photobacterium sp. strain J15. Acta Biochim Pol 61:745–752

    PubMed  Google Scholar 

  • Yang KS, Sohn JH, Kim HK (2009) Catalytic properties of a lipase from Photobacterium lipolyticum for biodiesel production containing a high methanol concentration. J Biosci Bioeng 107:599–604

    Article  CAS  PubMed  Google Scholar 

  • Yoon JH, Lee JK, Kim YO, Oh TK (2005) Photobacterium lipolyticum sp. nov., a bacterium with lipolytic activity isolated from the Yellow Sea in Korea. Int J Syst Evol Microbiol 55:335–339

  • Yoshikawa K, Takadera T, Adachi K, Nishijima M, Sano H (1997) Korormicin, a novel antibiotic specifically active against marine gram-negative bacteria, produced by a marine bacterium. J Antibiot (Tokyo) 50:949–953

    Article  CAS  Google Scholar 

  • Yoshizawa S, Wada M, Kita-Tsukamoto K, Yokota A, Kogure K (2009) Photobacterium aquimaris sp. nov., a luminous marine bacterium isolated from seawater. Int J Syst Evol Microbiol 59:1438–1442

    Article  CAS  PubMed  Google Scholar 

  • Zhang S-D, Barbe V, Garel M, Zhang W-J, Chen H, Santini C-L, Murat D, Jing H, Zhao Y, Lajus A, Martini S, Pradel N, Tamburini C, Wu L-F (2014) Genome sequence of luminous piezophile Photobacterium phosphoreum ANT-2200. Genome Announc 2:9–10

    Google Scholar 

  • Zulyniak MA, Perreault M, Gerling C, Spriet LL, Mutch DM (2013) Fish oil supplementation alters circulating eicosanoid concentrations in young healthy men. Metabolism 62:1107–1113

    Article  CAS  PubMed  Google Scholar 

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Correspondence to Suriana Sabri.

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This study was funded by research grant number 02-02-14-1500FR under Fundamental Research Grant Scheme (FRGS) from the Ministry of Higher Education, Government of Malaysia.

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Moi, I.M., Roslan, N.N., Leow, A.T.C. et al. The biology and the importance of Photobacterium species. Appl Microbiol Biotechnol 101, 4371–4385 (2017). https://doi.org/10.1007/s00253-017-8300-y

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