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An external substrate-free blue/white screening system in Escherichia coli

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Abstract

Since the lacZα-based blue/white screening system was introduced to molecular biology, several different visual reporter systems were developed and used for various purposes in Escherichia coli. A common limit to the existent visual reporter systems is that an extracellular chromogenic substrate has to be added for the visible pigment production. In this study, we developed a new blue/white screening system based on a non-ribosomal peptide synthetase encoded by idgS from Streptomyces and a phosphopantetheinyl transferase encoded by sfp from Bacillus. When IdgS is activated from an apo-form to a holo-form via a posttranslational modification catalyzed by Sfp, it can synthesize a blue pigment indigoidine using L-glutamine, the amino acid abundant in cells, as a substrate. The new blue/white screening system contains a recipient E. coli strain with an optimized idgS gene cassette and a cloning vector harboring an sfp gene with an in-frame insertion of a multiple cloning site close to its N-terminal. We demonstrated that the IdgS/Sfp-based blue/white screening system is a powerful alternative to the lacZα-based screening system, which does not require any external substrate addition.

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References

  • Banerjee S, Kumar J, Apte-Deshpande A, Padmanabhan S (2010) A novel prokaryotic vector for identification and selection of recombinants: direct use of the vector for expression studies in E. coli. Microb Cell Factories 9:30. doi:10.1186/1475-2859-9-30

    Article  Google Scholar 

  • Bernard P, Gabant P, Bahassi EM, Couturier M (1994) Positive-selection vectors using the F plasmid ccdB killer gene. Gene 148(1):71–74

    Article  CAS  PubMed  Google Scholar 

  • Chaffin DO, Rubens CE (1998) Blue/white screening of recombinant plasmids in gram-positive bacteria by interruption of alkaline phosphatase gene (phoZ) expression. Gene 219(1–2):91–99

    Article  CAS  PubMed  Google Scholar 

  • Datsenko KA, Wanner BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97(12):6640–6645. doi:10.1073/pnas.120163297

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Engler C, Marillonnet S (2014) Golden gate cloning. Methods Mol Biol 1116:119–131. doi:10.1007/978-1-62703-764-8_9

    Article  CAS  PubMed  Google Scholar 

  • Fang J, Zhang Y, Huang L, Jia X, Zhang Q, Zhang X, Tang G, Liu W (2008) Cloning and characterization of the tetrocarcin A gene cluster from Micromonospora chalcea NRRL 11289 reveals a highly conserved strategy for tetronate biosynthesis in spirotetronate antibiotics. J Bacteriol 190(17):6014–6025. doi:10.1128/JB.00533-08

  • Gentz R, Bujard H (1985) Promoters recognized by Escherichia coli RNA polymerase selected by function: highly efficient promoters from bacteriophage T5. J Bacteriol 164(1):70–77

    CAS  PubMed  PubMed Central  Google Scholar 

  • Hennecke H, Gunther I, Binder F (1982) A novel cloning vector for the direct selection of recombinant DNA in E. coli. Gene 19(2):231–234

    Article  CAS  PubMed  Google Scholar 

  • Heuermann K, Cosgrove J (2001) S-Gal: an autoclavable dye for color selection of cloned DNA inserts. BioTechniques 30(5):1142–1147

    CAS  PubMed  Google Scholar 

  • Kuhn R, Starr MP, Kuhn DA, Bauer H, Knackmuss HJ (1965) Indigoidine and other bacterial pigments related to 3,3′-bipyridyl. Arch Mikrobiol 51:71–84

    Article  CAS  PubMed  Google Scholar 

  • Langley KE, Villarejo MR, Fowler AV, Zamenhof PJ, Zabin I (1975) Molecular basis of beta-galactosidase alpha-complementation. Proc Natl Acad Sci U S A 72(4):1254–1257

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Li P, Li J, Guo Z, Tang W, Han J, Meng X, Hao T, Zhu Y, Zhang L, Chen Y (2015) An efficient blue/white screening based gene inactivation system for Streptomyces. Appl Microbiol Biotechnol 99(4):1923–1933. doi:10.1007/s00253-014-6369-0

    Article  CAS  PubMed  Google Scholar 

  • Miyazaki K (2010) Lethal ccdB gene-based zero-background vector for construction of shotgun libraries. J Biosci Bioeng 110(3):372–373. doi:10.1016/j.jbiosc.2010.02.016

    Article  CAS  PubMed  Google Scholar 

  • Muller M, Auslander S, Auslander D, Kemmer C, Fussenegger M (2012) A novel reporter system for bacterial and mammalian cells based on the non-ribosomal peptide indigoidine. Metab Eng 14(4):325–335. doi:10.1016/j.ymben.2012.04.002

    Article  CAS  PubMed  Google Scholar 

  • Myronovskyi M, Welle E, Fedorenko V, Luzhetskyy A (2011) Beta-glucuronidase as a sensitive and versatile reporter in actinomycetes. Appl Environ Microbiol 77(15):5370–5383. doi:10.1128/AEM.00434-11

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Nakanishi N, Oshida T, Yano S, Takeda K, Yamaguchi T, Ito Y (1986) Construction and characterization of new cloning vectors derived from Streptomyces griseobrunneus plasmid pBT1 and containing amikacin and sulfomycin resistance genes. Plasmid 15(3):217–229

    Article  CAS  PubMed  Google Scholar 

  • Owen JG, Copp JN, Ackerley DF (2011) Rapid and flexible biochemical assays for evaluating 4′-phosphopantetheinyl transferase activity. Biochem J 436(3):709–717. doi:10.1042/BJ20110321

    Article  CAS  PubMed  Google Scholar 

  • Owen JG, Robins KJ, Parachin NS, Ackerley DF (2012) A functional screen for recovery of 4′-phosphopantetheinyl transferase and associated natural product biosynthesis genes from metagenome libraries. Environ Microbiol 14(5):1198–1209. doi:10.1111/j.1462-2920.2012.02699.x

    Article  CAS  PubMed  Google Scholar 

  • Quadri LE, Weinreb PH, Lei M, Nakano MM, Zuber P, Walsh CT (1998) Characterization of Sfp, a Bacillus subtilis phosphopantetheinyl transferase for peptidyl carrier protein domains in peptide synthetases. Biochemistry 37(6):1585–1595. doi:10.1021/bi9719861

    Article  CAS  PubMed  Google Scholar 

  • Reverchon S, Rouanet C, Expert D, Nasser W (2002) Characterization of indigoidine biosynthetic genes in Erwinia chrysanthemi and role of this blue pigment in pathogenicity. J Bacteriol 184(3):654–665

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Salis HM, Mirsky EA, Voigt CA (2009) Automated design of synthetic ribosome binding sites to control protein expression. Nat Biotechnol 27(10):946–950. doi:10.1038/nbt.1568

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sambrook J, MacCallum P, Russell D (2001) Molecular cloning—a laboratory manual (3rd ed.) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY

  • St-Pierre F, Cui L, Priest DG, Endy D, Dodd IB, Shearwin KE (2013) One-step cloning and chromosomal integration of DNA. ACS Synth Biol 2(9):537–541. doi:10.1021/sb400021j

    Article  CAS  PubMed  Google Scholar 

  • Takahashi H, Kumagai T, Kitani K, Mori M, Matoba Y, Sugiyama M (2007) Cloning and characterization of a Streptomyces single module type non-ribosomal peptide synthetase catalyzing a blue pigment synthesis. J Biol Chem 282(12):9073–9081. doi:10.1074/jbc.M611319200

    Article  CAS  PubMed  Google Scholar 

  • Wong SS, Truong K (2010) Fluorescent protein-based methods for on-plate screening of gene insertion. PLoS One 5(12):e14274. doi:10.1371/journal.pone.0014274

    Article  PubMed  PubMed Central  Google Scholar 

  • Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33(1):103-119

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Acknowledgements

The study was funded in part by the Ministry of Science and Technology of China (2015CB150600 and 2013CB734000) and the National Natural Science Foundation of China (31400048 and 31522001). Y.C. is an awardee for the “Hundred Talents Program” of the Chinese Academy of Sciences.

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Correspondence to Yihua Chen.

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Yihua Chen and Zhoujie Xie have filed a patent application related to this work.

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This article does not contain any studies with human participants or animals performed by any of the authors.

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Xie, Z., Zhang, Z., Cao, Z. et al. An external substrate-free blue/white screening system in Escherichia coli . Appl Microbiol Biotechnol 101, 3811–3820 (2017). https://doi.org/10.1007/s00253-017-8252-2

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