Andersen SJ, Hennebel T, Gildemyn S, Coma M, Desloover J, Berton J, Tsukamoto J, Stevens C, Rabaey K (2014) Electrolytic membrane extraction enables production of fine chemicals from biorefinery sidestreams. Environ Sci Technol 48(12):7135–7142. doi:10.1021/es500483w
CAS
Article
PubMed
Google Scholar
Bobillo M, Marshall VM (1992) Effect of acidic pH and salt on acid end-products by Lactobacillus plantarum in aerated, glucose-limited continuous culture. J Appl Bacteriol 73(1):67–70. doi:10.1111/j.1365-2672.1992.tb04971.x
CAS
Article
Google Scholar
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7(5):335–336. doi:10.1038/nmeth.f.303
CAS
Article
PubMed
PubMed Central
Google Scholar
Colin T, Bories A, Lavigne C, Moulin G (2001) Effects of acetate and butyrate during glycerol fermentation by Clostridium butyricum. Curr Microbiol 43(4):238–243. doi:10.1007/s002840010294
CAS
Article
PubMed
Google Scholar
Costa KC, Lie TJ, Jacobs MA, Leigh JA (2013) H2-independent growth of the hydrogenotrophic methanogen Methanococcus maripaludis. Am Soc Microbiol 4(2):1–7. doi:10.1128/mBio.00062-13
Google Scholar
De Mey M, Lequeux GJ, Beauprez JJ, Maertens J, Van Horen E, Soetaert WK, Vanrolleghem PA, Vandamme EJ (2007) Comparison of different strategies to reduce acetate formation in Escherichia coli. Biotechnol Prog 23(5):1053–1063. doi:10.1021/bp070170g
PubMed
Google Scholar
De Weirdt R (2013) Dietary fat and the human gut microbiome (PhD thesis). Ghent University, Faculty of Bioscience Engineering, Ghent, Belgium
Dumbrepatil A, Adsul M, Chaudhari S, Khire J, Gokhale D (2008) Utilization of molasses sugar for lactic acid production by Lactobacillus delbrueckii subsp. delbrueckii Mutant Uc-3 in batch fermentation. Appl Environ Microbiol 74(1):333–335. doi:10.1128/aem.01595-07
CAS
Article
PubMed
Google Scholar
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27(16):2194–2200. doi:10.1093/bioinformatics/btr381
CAS
Article
PubMed
PubMed Central
Google Scholar
Elsden SR (1945) The fermentation of carbohydrates in the rumen of the sheep. J Exp Biol 22:51–62
CAS
PubMed
Google Scholar
Fotidis IA, Karakashev D, Kotsopoulos TA, Martzopoulos GG, Angelidaki I (2013) Effect of ammonium and acetate on methanogenic pathway and methanogenic community composition. FEMS Microbiol Ecol 83(1):38–48. doi:10.1111/j.1574-6941.2012.01456.x
CAS
Article
PubMed
Google Scholar
GIA (2012) Lactic acid—a global strategic business report http://www.strategyr.com/Lactic_Acid_Market_Report.asp. Accessed on 24 October 2014
Hunt KA, Flynn JM, Naranjo B, Shikhare ID, Gralnick JA (2010) Substrate-level phosphorylation is the primary source of energy conservation during anaerobic respiration of Shewanella oneidensis strain MR-1. J Bacteriol 192(13):3345–3351. doi:10.1128/JB.00090-10
CAS
Article
PubMed
PubMed Central
Google Scholar
Huws SA, Kim EJ, Lee MRF, Scott MB, Tweed JKS, Pinloche E, Wallace RJ, Scollan ND (2011) As yet uncultured bacteria phylogenetically classified as Prevotella, Lachnospiraceae incertae sedis and unclassified Bacteroidales, Clostridiales and Ruminococcaceae may play a predominant role in ruminal biohydrogenation. Environ Microbiol 13:1500–1512. doi:10.1111/j.1462-2920.2011.02452.x
CAS
Article
PubMed
Google Scholar
Huws SA, Kim EJ, Cameron SJS, Girdwood SE, Davies L, Tweed J, Vallin H, Scollan ND (2015) Characterization of the rumen lipidome and microbiome of steers fed a diet supplemented with flax and Echium oil. Microb Biotechnol 8(2):331–341. doi:10.1111/1751-7915.12164
CAS
Article
PubMed
Google Scholar
Kabel MA, Yeoman CJ, Han Y, Dodd D, Abbas CA, de Bont JAM, Morrison M, Cann IKO, Mackie RI (2011) Biochemical characterization and relative expression levels of multiple carbohydrate esterases of the xylanolytic rumen bacterium Prevotella ruminicola 23 grown on an ester-enriched substrate. Appl Environ Microbiol 77(16):5671–5681. doi:10.1128/aem.05321-11
CAS
Article
PubMed
PubMed Central
Google Scholar
Khor WC, Rabaey K, Vervaeren H (2015) Low temperature calcium hydroxide treatment enhances anaerobic methane production from (extruded) biomass. Bioresour Technol 176:181–188. doi:10.1016/j.biortech.2014.11.037
CAS
Article
PubMed
Google Scholar
Lee HJ, Xie Y, Koo YM, Wang NH (2004) Separation of lactic acid from acetic acid using a four-zone SMB. Biotechnol Prog 20(1):179–192. doi:10.1021/bp025663u
CAS
Article
PubMed
Google Scholar
Luli GW, Strohl WR (1990) Comparison of growth, acetate production, and acetate inhibition of Escherichia coli strains in batch and fed-batch fermentations. Appl Environ Microbiol 56(4):1004–1011
CAS
PubMed
PubMed Central
Google Scholar
Makkar HPS, Sharma OP, Dawra RK, Negi SS (1982) Simple determination of microbial protein in rumen liquor. J Dairy Sci 65(11):2170–2173. doi:10.3168/jds.S0022-0302(82)82477-6
CAS
Article
PubMed
Google Scholar
McCarty PL, McKinney RE (1961) Salt toxicity in anaerobic digestion. J Water Pollut Con F 33(4):399–415 Stable URL: http://www.jstor.org/stable/25034396
Oude Elferink SJWH, Krooneman J, Gottschal JC, Spoelstra SF, Faber F, Driehuis F (2001) Anaerobic conversion of lactic acid to acetic acid and 1,2-propanediol by Lactobacillus buchneri. Appl Environ Microbiol 67(1):125–132
CAS
Article
PubMed
PubMed Central
Google Scholar
Prokopenko MG, Hirst MB, De Brabandere L, Lawrence DJ, Berelson WM, Granger J, Chang BX, Dawson S, Crane EJ 3rd, Chong L, Thamdrup B, Townsend-Small A, Sigman DM (2013) Nitrogen losses in anoxic marine sediments driven by Thioploca-anammox bacterial consortia. Nature 500(7461):194–198. doi:10.1038/nature12365
CAS
Article
PubMed
Google Scholar
Quatravaux S, Remize F, Bryckaert E, Colavizza D, Guzzo J (2006) Examination of Lactobacillus plantarum lactate metabolism side effects in relation to the modulation of aeration parameters. J Appl Microbiol 101(4):903–912. doi:10.1111/j.1365-2672.2006.02955.x
CAS
Article
PubMed
Google Scholar
Roe AJ, O’Byrne C, McLaggan D, Booth IR (2002) Inhibition of Escherichia coli growth by acetic acid: a problem with methionine biosynthesis and homocysteine toxicity. Microbiology 148(7):2215–2222
CAS
Article
PubMed
Google Scholar
Rosales-Colunga LM, Martínez-Antonio A (2014) Engineering Escherichia coli K12 MG1655 to use starch. Microb Cell Factories 13:74. doi:10.1186/1475-2859-13-74
Article
Google Scholar
Russell JB (1992) Another explanation for the toxicity of fermentation acids at low pH: anion accumulation versus uncoupling. J Appl Bacteriol 73(5):363–370. doi:10.1111/j.1365-2672.1992.tb04990.x
CAS
Article
Google Scholar
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75(23):7537–7541. doi:10.1128/aem.01541-09
CAS
Article
PubMed
PubMed Central
Google Scholar
Stewardson AJ, Gaïa N, François P, Malhotra-Kumar S, Delémont C, Martinez de Tejada B, Schrenzel J, Harbarth S, Lazarevic V (2015) Collateral damage from oral ciprofloxacin versus nitrofurantoin in outpatients with urinary tract infections: a culture-free analysis of gut microbiota. Clin Microbiol Infec 21(4):344.e1–344.e11. doi:10.1016/j.cmi.2014.11.016
CAS
Article
Google Scholar
Takahashi C, Takahashi D, Carvalhal M, Alterthum F (1999) Effects of acetate on the growth and fermentation performance of Escherichia coli KO11. Appl Biochem Biotech 81(3):193–203. doi:10.1385/ABAB:81:3:193
CAS
Article
Google Scholar
Tang IC, Okos MR, Yang S-T (1989) Effects of pH and acetic acid on homoacetic fermentation of lactate by Clostridium formicoaceticum. Biotechnol Bioeng 34(8):1063–1074. doi:10.1002/bit.260340807
CAS
Article
PubMed
Google Scholar
Taskila S, Ojamo H (2013a) The current status and future expectations in industrial production of lactic acid by lactic acid bacteria
Taskila S, Ojamo H (2013b) The current status and future expectations in industrial production of lactic acid by lactic acid bacteria. R & D for food, health and livestock purposes, Dr. J. Marcelino Kongo (Ed.), ISBN: 978-953-51-0955-6, InTech, doi:10.5772/51282
Temudo MF, Kleerebezem R, van Loosdrecht M (2007) Influence of the pH on (open) mixed culture fermentation of glucose: a chemostat study. Biotechnol Bioeng 98(1):69–79. doi:10.1002/bit.21412
CAS
Article
PubMed
Google Scholar
Thauer RK, Jungermann K, Decker K. (1977) Energy conservation in chemotrophic anaerobic bacteria. Bacteriol Rev 41(1):100–180 URL: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC413997/
Thomas TD, Ellwood DC, Longyear VM (1979) Change from homo- to heterolactic fermentation by Streptococcus lactis resulting from glucose limitation in anaerobic chemostat cultures. J Bacteriol 138:109–117
CAS
PubMed
PubMed Central
Google Scholar
Vilchez-Vargas R, Geffers R, Suarez-Diez M, Conte I, Waliczek A, Kaser VS, Kralova M, Junca H, Pieper DH (2013) Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system. Environ Microbiol 15(4):1016–1039. doi:10.1111/j.1462-2920.2012.02752.x
CAS
Article
PubMed
Google Scholar
Wang X, Li X, Zhao C, Hu P, Chen H, Liu Z, Liu G, Wang Z (2012) Correlation between composition of the bacterial community and concentration of volatile fatty acids in the rumen during the transition period and ketosis in dairy cows. Appl Environ Microbiol 78(7):2386–2392. doi:10.1128/aem.07545-11
CAS
Article
PubMed
PubMed Central
Google Scholar
Zeng AP, Ross A, Biebl H, Tag C, Günzel B, Deckwer WD (1994) Multiple product inhibition and growth modeling of Clostridium butyricum and Klebsiella pneumoniae in glycerol fermentation. Biotechnol Bioeng 44(8):902–911. doi:10.1002/bit.260440806
CAS
Article
PubMed
Google Scholar