Abstract
The yeasts of the Saccharomyces genus exhibit a low pre-zygotic barrier and readily form interspecies hybrids. Following the hybridization event, the parental genomes undergo gross chromosomal rearrangements and genome modifications that may markedly influence the metabolic activity of descendants. In the present study, two artificially constructed hybrid yeasts (Saccharomyces cerevisiae x Saccharomyces uvarum and S. cerevisiae x Saccharomyces kudriavzevii) were used in order to evaluate the influence of high-sugar wine fermentation on the evolution of their genotypic and phenotypic properties. It was demonstrated that the extent of genomic modifications differs among the hybrids and their progeny, but that stress should not always be a generator of large genomic disturbances. The major genome changes were observed after meiosis in the F1 segregants in the form of the loss of different non-S. cerevisiae chromosomes. Under fermentation condition, each spore clone from a tetrad developed a mixed population characterized by different genotypic and phenotypic properties. The S. cerevisiae x S. uvarum spore clones revealed large modifications at the sequence level of the S. cerevisiae sub-genome, and some of the clones lost a few additional S. cerevisiae and S. uvarum chromosomes. The S. cerevisiae x S. kudriavzevii segregants were subjected to consecutive loss of the S. kudriavzevii markers and chromosomes. Both the hybrid types showed increased ethanol and glycerol production as well as better sugar consumption than their parental strains. The hybrid segregants responded differently to stress and a correlation was found between the observed genotypes and fermentation performances.
This is a preview of subscription content, access via your institution.



References
Adams J, Oeller PW (1986) Structure of evolving populations of Saccharomyces cerevisiae: adaptive changes are frequently associated with sequence alterations involving mobile elements belonging to the Ty family. Proc Natl Acad Sci U S A 83:7124–7127
Antonelli A, Castellari L, Zambonelli C, Carnacini A (1999) Yeast influence on volatile composition of wines. J Agric Food Chem 47:1139–1144
Antunovics Z, Nguyen HV, Gaillardin C, Sipiczki M (2005) Gradual genome stabilisation by progressive reduction of the Saccharomyces uvarum genome in an interspecific hybrid with Saccharomyces cerevisiae. FEMS Yeast Res 5:141–1150
Arroyo-López FN, Pérez-Torrado R, Querol A, Barrio E (2010) Modulation of the glycerol and ethanol syntheses in the yeast Saccharomyces kudriavzevii differs from that exhibited by Saccharomyces cerevisiae and their hybrid. Food Microbiol 27:628–637
Belloch C, Orlic S, Barrio E, Querol A (2008) Fermentative stress adaptation of hybrids within the Saccharomyces sensu stricto complex. Int J Food Microbiol 122:188–195
Belloch C, Pérez-Torrado R, González SS, Pérez-Ortín JE, García-Martínez J, Querol A, Barrio E (2009) Chimeric genomes of natural hybrids of Saccharomyces cerevisiae and Saccharomyces kudriavzevii. Appl Environ Microbiol 75:2534–2544
Bellon JR, Eglinton JM, Siebert TE, Pollnitz AP, Rose L, de Barros LM, Chambers PJ (2011) Newly generated interspecific wine yeast hybrids introduce flavour and aroma diversity to wines. Appl Microbiol Biotechnol 91:603–612
Bellon JR, Schmid F, Capone DL, Dunn BL, Chambers PJ (2013) Introducing a new breed of wine yeast: interspecific hybridization between a commercial Saccharomyces cerevisiae wine yeast and Saccharomyces mikatae. PLoS one 8:e62053
Bellon JR, Yang F, Day MP, Inglis DL, Chambers PJ (2015) Designing and creating Saccharomyces interspecific hybrids for improved, industry relevant, phenotypes. Appl Microbiol Biotechnol 99:8597–8609
Bizaj E, Cordente AG, Bellon JR, Raspor P, Curtin CD, Pretorius IS (2012) A breeding strategy to harness flavor diversity of Saccharomyces interspecific hybrids and minimize hydrogen sulfide production. FEMS Yeast Res 12:456–465
Bond U, Neal C, Donnelly D, James TC (2004) Aneuploidy and copy number breakpoints in the genome of lager yeasts mapped by microarray hybridisation. Curr Genet 45:360–370
Chambers SR, Hunter N, Louis EJ, Borts RH (1996) The mismatch repair system reduces meiotic homologous recombination and stimulates recombination-dependent chromosome loss. Mol Cell Biol 16:6110–6120
Combina M, Pérez-Torrado R, Tronchoni J, Belloch C, Querol A (2012) Genome-wide gene expression of natural hybrid between Saccharomyces cerevisiae and S. kudriavzevii under enological conditions. Int J Food Microbiol 157:340–345
Di Rienzi SC, Collingwood D, Raghuraman MK, Brewer BJ (2009) Fragile genomic sites are associated with origins of replication. Genome Biol Evol 1:350–363
Dunn B, Paulish T, Stanbery A, Piotrowski J, Koniges G, Kroll E, Louis EJ, Litti G, Sherlock G, Rosenzweig F (2013) Recurrent rearrangement during adaptive evolution in an interspecies yeast hybrid suggests a model for rapid introgression. PLoS Genet 9:e1003366
Dunn B, Sherlock G (2008) Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus. Genome Res 18:1610–1623
Duval EH, Alves SL Jr, Dunn B, Sherlock G, Stambuk BU (2010) Microarray karyotyping of maltose-fermenting Saccharomyces yeasts with differing maltotriose utilization profiles reveals copy number variation in genes involved in maltose and maltotriose. J Appl Microbiol 109:248–259
Eglinton JM, McWilliam SJ, Fogarty MW, Francis IL, Kwiatkowski MJ, Høj PB, Henschke PA (2000) The effect of Saccharomyces bayanus-mediated fermentation on the chemical composition and aroma profile of chardonnay wine. Aus J Grape Wine Res 6:190–196
Fernández-González M, Úbeda JF, Briones AI (2015) Study of Saccharomyces cervisiae wine traits for breeding through fermentation efficiency and tetrad analisis. Curr Microbiol 70:441–449
Gafner J, Schütz M (1996) Impact of glucose-fructose-ratio on stuck fermentations: practical experiences to restart stuck fermentations. Vitic Enol Sci 51:214–218
Gangl H, Matusic M, Tscheik G, Tiefenbrunner W, Hack C, Lopandic K (2009) Exceptional fermentation characteristics of natural hybrids from Saccharomyces cerevisiae and S. kudriavzevii. New Biotechnol 25:244–251
González SS, Barrio E, Gafner J, Querol A (2006) Natural hybrids from Saccharomyces cerevisiae, Saccharomyces bayanus and Saccharomyces kudriavzevii in wine fermentations. FEMS Yeast Res 6:1221–1234
González SS, Gallo L, Climent MD, Barrio E, Querol A (2007) Enological characterization of natural hybrids from Saccharomyces cerevisiae and Saccharomyces kudriavzevii. Int J Food Microbiol 116:11–18
González SS, Barrio E, Querol A (2008) Molecular characterization of new natural hybrids of Saccharomyces cerevisiae and S. kudriavzevii in brewing. Appl Environ Microbiol 74:2314–2320
Groth G, Hansen J, Piškur J (1999) A natural chimeric yeast containing genetic material from three species. Int J Syst Bacteriol 49:1933–1938
Hartung J, Elpelt B (1999) Multivariate statistik. Oldenbourg Wissenschaftsverlag, München
Hofbauer J, Sigmund K (1984) Evolutionstheorie und dynamische systeme. Mathematische Aspekte der Selektion, Parey, Berlin-Hamburg
Jacques N, Mallet S, Casaregola S (2009) Delimitation of the species of the Debaryomyces hansenii complex by intron sequence analysis. Int J Syst Evol Microbiol 59:1242–1251
Kishimoto M, Goto S (1995) Growth temperatures and electrophoretic karyotyping as tools for practical discrimination of Saccharomyces bayanus and Saccharomyces cerevisiae. J Gen Appl Microbiol 41:239–247
Kunicka-Styczyńska A, Rajkowska K (2011) Physiological and genetic stability of hybrids of industrial wine yeasts Saccharomyces sensu stricto complex. J Appl Microbiol 110:1538–1549
Libkind D, Hittinger CT, Valério E, Gonçalves C, Dover J, Johnston M, Gonçalves P, Sampaio JP (2011) Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proc Natl Acad Sci 108:14539–14544
Lopandic K, Gangl H, Wallner E, Tscheik G, Leitner G, Querol A, Borth N, Breitenbach M, Prillinger H, Tiefenbrunner W (2007) Genetically different wine yeasts isolated from Austrian vine-growing regions influence wine aroma differently and contain putative hybrids between Saccharomyces cerevisiae and Saccharomyces kudriavzevii. FEMS Yeast Res 7:953–965
Lopandic K, Rentsendorj U, Prillinger H, Sterflinger K (2013) Molecular characterisation of the closely related Debaryomyces species: proposition of D. vindobonensis sp. nov. from a municipal wastewater treatment plant. J Gen Appl Microbiol 59:49–58
Masneuf I, Hansen J, Groth C, Piškur J, Dubourdieu D (1998) New hybrids between Saccharomyces sensu stricto yeast species found among wine and cider production strains. Appl Environ Microbiol 64:3887–3892
Morales L, Dujon B (2012) Evolutionary role of interspecies hybridization and genetic exchanges in yeast. Microbiol Mol Biol Rev 76:721–739
Nakao Y, Kanamori T, Itoh T, Kodama Y, Rainieri S, Nakamura N, Shimonaga T, Hattori M, Ashikari T (2009) Genome sequence of the lager brewing yeast, an interspecies hybrid. DNA Res 16:115–129
Naumov GI, James SA, Naumova ES, Louis EJ, Roberts IN (2000) Three new species in the Saccharomyces sensu stricto complex: Saccharomyces cariocanus, Saccharomyces kudriavzevii and Saccharomyces mikatae. Int J Syst Evol Microbiol 5:1932–1942
Naumova ES, Naumov GI, Manneuf-Pomerade I, Aigle M (2005) Molecular genetic study of introgression between Saccharomyces bayanus and S. cerevisiae. Yeast 22:1099–1115
Noble AC, Bursick GF (1984) The contribution of glycerol to perceived viscosity and sweetness in white wine. Am J Enol Vitic 35:110–112
OIV (2015) Compendium of international methods of analysis of wines and musts (2 vol.). The international organisation of vine and wine. http://www.oiv.int/en/normen-und-technische-dokumente/analysemethoden/sammlung-internationaler-analysemethoden-fur-wein-und-most-2-bande. Accessed 10 March 2015
Oliveira BM, Barrio E, Querol A, Pèrez-Torrado R (2014) Enhanced enzymatic activity of glycerol-3-phosphate dehydrogenase from cryophilic Saccharomyces kudriavzevii. PLoS one 9:e87290
Pérez-Través L, Lopes CA, Querol A, Barrio E (2014) On the complexity of the Saccharomyces bayanus taxon: hybridization and potential hybrid speciation. PLoS one 9:e93729
Peris D, Belloch C, Lopandic K, Álvarez-Pérez JM, Querol A, Barrio E (2012a) The molecular characterization of new types of Saccharomyces cerevisiae x S. kudriavzevii hybrid yeasts unveils a high genetic diversity. Yeast 29:81–91
Peris D, Lopes CA, Belloch C, Querol A, Barrio E (2012b) Comparative genomics among Saccharomyces cerevisiae x Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins. BMC Genomics 13:407
Pfliegler WP, Antunovics Z, Sipiczki M (2012) Double sterility barrier between Saccharomyces species and its breakdown in allopolyploid hybrids by chromosome loss. FEMS Yeast Res 12:703–718
Pfliegler WP, Atanasova A, Karanyicz E, Sipiczki M, Bond U, Druzhinina IS, Sterflinger K, Lopandic K (2014) Generation of new genotypic and phenotypic features in artificial and natural yeast hybrids. Food Technol Biotechnol 52:46–57
Piotrowski JS, Nagarajan S, Kroll E, Stanbery A, Chiotti KE, Kruckeberg AL, Dunn B, Sherlock G, Rosenzweig F (2012) Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve. BMC Evol Biol 12:46
Rinehart TA (2004) AFLP analysis using GeneMapper® software and an excel® macro that aligns and converts output to binary. Biotechniques 37:186–188
Rodrigues de Sousa H, Spencer-Martins I, Gonçalves P (2004) Differential regulation by glucose and fructose of a gene encoding a specific fructose/H+ symporter in Saccharomyces sensu stricto yeasts. Yeast 21:519–530
Salvadó Z, Arroyo-López FN, Guillamón JM, Salazar G, Querol A, Barrio E (2011) Temperature adaptation markedly determines evolution within the genus Saccharomyces. Appl Environ Microbiol 77:2292–2302
Sanchez RG, Solodovnikova N, Wendland J (2012) Breeding of lager yeast with Saccharomyces cerevisiae improves stress resistance and fermentation performance. Yeast 29:343–355
Schneyder J (1979) ALVA-methodenbuch für weinanalysen in Österreich. Bundesministerium für Land- und Forstwirtschaft, Vienna
Serra A, Strehaiano P, Taillandier P (2005) Influence of temperature and pH on Saccharomyces bayanus var. uvarum growth; impact of a wine yeast interspecific hybridization on these parameters. Int J Food Microbiol 104:257–265
Sipiczki M (2008) Interspecies hybridization and recombination in Saccharomyces wine yeasts. FEMS Yeast Res 8:996–1007
Sipiczki M (2011) Diversity, variability and fast adaptive evolution of the wine yeast (Saccharomyces cerevisiae) genome-a review. Ann Microbiol 61:85–93
Stanley D, Fraser S, Stanley GA, Chambers PJ (2010) Retrotransposon expression in ethanol-stressed Saccharomyces cerevisiae. Appl Microbiol Biotechnol 87:1447–1454
Tronchoni J, Medina V, Guillamón JM, Querol A, Pérez-Torrado R (2014) Transcriptomics of cryophilic Saccharomyces kudriavzevii reveals the key role of gene translation efficiency in cold stress adaptations. BMC Genomics 15:432
Tronchoni J, Rozès N, Querol A, Guillamón JM (2012) Lipid composition of wine strains of Saccharomyces kudriavzevii and Saccharomyces cerevisiae grown at low temperature. Int J Food Microbiol 155:191–198
Van de Peer Y, De Wachter R (1994) TREECON for windows: a software package for the construction and drawing of evolutionary trees for the Microsoft windows environment. Comput Appl Biosci 10:569–570
Acknowledgments
We would like to thank E. Barrio and A. Querol for providing the strain HA2787. This study was partially supported by the grant 83ÖU12 from the Stiftung Aktion Österreich-Ungarn. WPP acknowledges the support of the Postdoctoral Fellowship Programme of the Hungarian Academy of Sciences (MTA).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Human and animal rights and informed consent
This article does not contain any studies with human participants or animals performed by any of the authors.
Electronic Supplementary Material
ESM 1
(PDF 53 kb)
Rights and permissions
About this article
Cite this article
Lopandic, K., Pfliegler, W.P., Tiefenbrunner, W. et al. Genotypic and phenotypic evolution of yeast interspecies hybrids during high-sugar fermentation. Appl Microbiol Biotechnol 100, 6331–6343 (2016). https://doi.org/10.1007/s00253-016-7481-0
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00253-016-7481-0
Keywords
- Genotypic and phenotypic evolution
- High-sugar wine fermentation
- Saccharomyces interspecies hybrids
- AFLP
- Karyotyping