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Overexpression of native Saccharomyces cerevisiae ER-to-Golgi SNARE genes increased heterologous cellulase secretion

Abstract

Soluble N-ethylmaleimide-sensitive factor attachment receptor proteins (SNAREs) are essential components of the yeast protein-trafficking machinery and are required at the majority of membrane fusion events in the cell, where they facilitate SNARE-mediated fusion between the protein transport vesicles, the various membrane-enclosed organelles and, ultimately, the plasma membrane. We have demonstrated an increase in secretory titers for the Talaromyces emersonii Cel7A (Te-Cel7A, a cellobiohydrolase) and the Saccharomycopsis fibuligera Cel3A (Sf-Cel3A, a β-glucosidase) expressed in Saccharomyces cerevisiae through single and co-overexpression of some of the endoplasmic reticulum (ER)-to-Golgi SNAREs (BOS1, BET1, SEC22 and SED5). Overexpression of SED5 yielded the biggest improvements for both of the cellulolytic reporter proteins tested, with maximum increases in extracellular enzyme activity of 22 % for the Sf-Cel3A and 68 % for the Te-Cel7A. Co-overexpression of the ER-to-Golgi SNAREs yielded proportionately smaller increases for the Te-Cel7A (46 %), with the Sf-Cel3A yielding no improvement. Co-overexpression of the most promising exocytic SNARE components identified in literature for secretory enhancement of the cellulolytic proteins tested (SSO1 for Sf-Cel3A and SNC1 for Te-Cel7A) with the most effective ER-to-Golgi SNARE components identified in this study (SED5 for both Sf-Cel3A and Te-Cel7A) yielded variable results, with Sf-Cel3A improved by 131 % and Te-Cel7A yielding no improvement. Improvements were largely independent of gene dosage as all strains only integrated single additional SNARE gene copies, with episomal variance between the most improved strains shown to be insignificant. This study has added further credence to the notion that SNARE proteins fulfil an essential role within a larger cascade of secretory machinery components that could contribute significantly to future improvements to S. cerevisiae as protein production host.

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References

  • Aden A, Foust T (2009) Technoeconomic analysis of the dilute sulphuric acid and enzymatic hydrolysis process for the conversion of corn stover to ethanol. Cellulose 16:535–545

    Article  CAS  Google Scholar 

  • Albertyn J, Hohmann S, Thevelein JM, Prior BA (1994) GPD1, which encodes glycerol-3-phosphate dehydrogenase, is essential for growth under osmotic stress in Saccharomyces cerevisiae, and its expression is regulated by the high-osmolarity glycerol response pathway. Mol Cell Biol 14(6):4135–4144

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Alper H, Fischer C, Nevoigt E, Stephanopoulos G (2005) Tuning genetic control through promoter engineering. Proc Natl Acad Sci 102(36):12678–12683

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Applied Biosystems (2008) Guide to performing relative quantitation of gene expression using real-time quantitative PCR. http://www3.appliedbiosystems.com/cms/groups/mcb_support/documents/generaldocuments/cms_042380.pdf

  • Bull VH, Thiede B (2012) Proteome analysis of tunicamycin-induced ER stress. Electrophoresis 33:1814–1823

    PubMed  Article  CAS  Google Scholar 

  • Carla Fama M, Raden D, Zacchi N, Lemos DR, Robinson AS, Silberstein S (2007) The Saccharomyces cerevisiae YFR041C/ERJ5 gene encoding a type I membrane protein with a J domain is required to preserve the folding capacity of the endoplasmic reticulum. Biochim Biophys Acta 1773(2):232–242

    PubMed  Article  CAS  Google Scholar 

  • Dascher C, Ossig R, Gallwitz D, Schmitt HD (1991) Identification and structure of four yeast genes (SLY) that are able to suppress the functional loss of YPT1, a member of the RAS superfamily. Mol Cell Biol 11:872–885

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Den Haan R, Rose S, Lynd L, Van Zyl WH (2007) Hydrolysis and fermentation of amorphous cellulose by recombinant Saccharomyces cerevisiae. Metab Eng 9:87–94

    Article  CAS  Google Scholar 

  • Den Haan R, Kroukamp H, Van Zyl JHD, Van Zyl WH (2013a) Cellobiohydrolase secretion by yeast: current state and prospects for improvement. Process Biochem 48(1):1–12

    Article  CAS  Google Scholar 

  • Den Haan R, Van Zyl JM, Harms TM, Van Zyl WH (2013b) Modelling the optimum enzymatic requirements for optimal cellulose conversion. Environ Res Lett 8(2):1–11

    Google Scholar 

  • Den Haan R, Van Rensburg E, Rose SH, Görgens JF, Van Zyl WH (2015) Progress and challenges in the engineering of non-cellulolytic microorganisms for consolidated bioprocessing. Curr Opin Biotechnol 33:32–38

    Article  CAS  Google Scholar 

  • Galdieri L, Mehrotra S, Yu S, Vancura A (2010) Transcriptional regulation in yeast during diauxic shift and stationary phase. OMICS 14:629–638

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Gellissen G, Hollenberg CP, Zanowicz A (1995) Gene expression in methylotrophic yeasts. Bioresour Technol 22:195–239

    CAS  Google Scholar 

  • Götte M, Fisher von Mollard G (1998) A new beat for the SNARE drum. Trends Cell Biol 8:215–218

    PubMed  Article  Google Scholar 

  • Grote E, Carr C, Novick P (2000) Ordering the final events in yeast exocytosis. J Cell Biol 151(2):439–452

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Gurgu L, Lafraya Á, Polaina J, Marrín-Navarro J (2011) Fermentation of cellobiose to ethanol by industrial Saccharomyces strains carrying the β-glucosidase gene (BGL1) from Saccharomycopsis fibuligera. Bioresour Technol 102:5229–5236

    PubMed  Article  CAS  Google Scholar 

  • Hackel BJ, Huang D, Bubolz JC, Wang XX, Shusta EV (2006) Production of soluble and active transferring receptor-targeting single-chain antibody using Saccharomyces cerevisiae. Pharm Res 23(4):790–797

    PubMed  Article  CAS  Google Scholar 

  • Han Y, Chen H (2008) Characterization of β-glucosidase from corn stover and its application in simultaneous saccharification and fermentation. Bioresour Technol 99:6081–6087

    PubMed  Article  CAS  Google Scholar 

  • Hardwick KG, Pelham HR (1992) SED5 encodes a 39-kDa integral membrane protein required for vesicular transport between the ER and the Golgi complex. J Cell Biol 119:513–521

    PubMed  Article  CAS  Google Scholar 

  • Harsay E, Bretscher A (1995) Parallel secretory pathways to the cell surface in yeast. J Cell Biol 131(2):297–310

    PubMed  Article  CAS  Google Scholar 

  • Hill J, Donald KA, Griffiths DE, Donald G (1991) DMSO-enhanced whole cell yeast transformation. Nucleic Acids Res 19(20):5791

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Hoffman CS, Winston F (1987) A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene 57:267–272

    PubMed  Article  CAS  Google Scholar 

  • Hong W, Lev S (2014) Tethering the assembly of SNARE complexes. Trends Cell Biol 24(1):35–43

    PubMed  Article  CAS  Google Scholar 

  • Hou J, Tyo K, Liu Z, Petranovic D, Nielsen J (2012) Engineering of vesicle trafficking improves heterologous protein secretion in Saccharomyces cerevisiae. Metab Eng 14:120–127

    PubMed  Article  CAS  Google Scholar 

  • Hu XH, Wang MH, Tan T, Li JR, Yang H, Leach H, Zhang RM, Luo ZW (2007) Genetic dissection of ethanol tolerance in the budding yeast Saccharomyces cerevisiae. Genetics 175(3):1479–1487

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Huang D, Shusta EV (2005) Secretion and surface display of green fluorescent protein using the yeast Saccharomyces cerevisiae. Biotechnol Prog 21(2):349–357

    PubMed  Article  CAS  Google Scholar 

  • Huang D, Gore PR, Shusta EV (2008) Increasing yeast secretion of heterologous proteins by regulating expression rates and post-secretory loss. Biotechnol Bioeng 101(6):1264–1275

    PubMed  Article  CAS  Google Scholar 

  • Hu C, Ahmed M, Melia TJ, Söllner TH, Mayer T, Rothman JE (2003) Fusion of cells by flipped SNAREs. Science 300:1745–1749

    PubMed  Article  CAS  Google Scholar 

  • Idiris A, Tohda H, Kumagai H, Takegawa K (2010) Engineering of protein secretion in yeast: strategies and impact on protein production. Appl Microbiol Biotechnol 86:403–417

    PubMed  Article  CAS  Google Scholar 

  • Ilmén M, Den Haan R, Brevnova E, McBride J, Wiswall E, Froehlich A, Koivula A, Voutilainen SP, Siika-aho M, La Grange DC, Thorngren N, Ahlgren S, Mellon M, Deleault K, Rajgarhia V, Van Zyl WH, Pentillä M (2011) High level secretion of cellobiohydrolases by Saccharomyces cerevisiae. Biotechnol Bioeng 4:30

    Google Scholar 

  • Isola J (2013) Cellulosic ethanol heads for cost competitiveness by 2016. In: Bloomberg New Energy Finance. http://about.bnef.com/press-releases/cellulosic-ethanol-heads-for-cost-competitiveness-by-2016/

  • Kim YS, Bhandari R, Cochran JR, Kuriyan J, Wittrup KD (2006) Directed evolution of the epidermal growth factor receptor extracellular domain for expression in yeast. Proteins 62(4):1026–1035

    PubMed  Article  CAS  Google Scholar 

  • Kjaerulff S, Jensen MR (2005) Comparison of different signal peptides for secretion of heterologous proteins in fission yeast. Biochem Biophys Res Commun 336(3):974–982

    PubMed  Article  CAS  Google Scholar 

  • Kloepper TH, Kienle CN, Fasshauer D (2008) SNAREing the basis of multicellularity: consequences of protein family expansion during evolution. Mol Biol Evol 25(9):2055–2068

    PubMed  Article  CAS  Google Scholar 

  • Kroukamp H, Den Haan R, Van Wyk N, Van Zyl WH (2013) Over-expression of native PSE1 and SOD1 in Saccharomyces cerevisiae improved heterologous cellulase secretion. Appl Energy 102:150–156

    Article  CAS  Google Scholar 

  • Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227(5259):680–685

    PubMed  Article  CAS  Google Scholar 

  • La Grange DC, Pretorius IS, Claeyssens M, Van Zyl WH (2001) Degradation of xylan to D-xylose by recombinant Saccharomyces cerevisiae co-expressing the Aspergillus niger β-xylosidase (xlnD) and the Trichoderma reesei xylanase II (Xyn2) genes. Appl Environ Microbiol 67(12):5512–5519

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Lee FW, Da Silva NA (1997) Sequential δ integration for the regulated insertion of cloned genes in Saccharomyces cerevisiae. Biotechnol Prog 13(4):368–373

    PubMed  Article  CAS  Google Scholar 

  • Malsam J, Kreye S, Söllner T (2008) Membrane fusion: SNAREs and regulation. Cell Mol Life Sci 65:2814–2832

    PubMed  Article  CAS  Google Scholar 

  • Malsam J, Söllner TH (2011) Organization of SNAREs within the Golgi stack. Cold Spring Harb Perspect Biol 3(10):a005249

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • McBride JEE, Deleault KM, Lynd LR, Pronk JT (2008) Recombinant yeast strains expressing tethered cellulase enzymes. Patent PCT/US2007/085390

  • McNew JA, Weber T, Parlati F, Johnston RJ, Melia TJ, Söllner TH, Rothman JE (2000) Close is not enough: SNARE-mediated membrane fusion requires and active mechanism that transduces force to membrane anchors. J Cell Biol 150:105–117

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Melia TJ, Weber T, McNew JA, Fisher LE, Johnson RJ, Parlati F, Mahal LK, Söllner TH, Rothman JE (2002) Regulation of membrane fusion by the membrane-proximal coil of the t-SNARE during zippering of SNAREpins. J Cell Biol 158:929–940

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Nasser AA, El-Moghaz (2010) Comparative study of salt tolerance in Saccharomyces cerevisiae and Pichia pastoris yeast strains. Adv Bio Res 1(1):169–176

  • Newman AP, Shim J, Ferro-Novick S (1990) BET1, BOS1, and SEC22 are members of a group of interacting yeast genes required for transport from the endoplasmic reticulum to the Golgi. Mol Cell Biol 10:3405–3414

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Ossipov D, Schröder-Köhne S, Schmitt HD (1999) Yeast ER-Golgi v-SNAREs Bos1p and Bet1p differ in steady-state localization and targeting. J Cell Sci 112:4135–4142

    PubMed  CAS  Google Scholar 

  • Ostergaard S, Olsson L, Nielsen J (2000) Metabolic engineering of Saccharomyces cerevisiae. Microbiol Mol Biol Rev 64(1):34–50

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Parlati F, McNew JA, Fukuda R, Miller R, Söllner TH, Rothman JE (2000) Topological restriction of SNARE-dependent membrane fusion. Nature 407:194–198

    PubMed  Article  CAS  Google Scholar 

  • Parlati F, Varlamov O, Paz K, McNew JA, Hurtado D, Söllner TH, Rothman JE (2002) Distinct SNARE complexes mediating membrane fusion in Golgi transport based on combinatorial specificity. Proc Natl Acad Sci 99(8):5424–5429

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Piontek M, Hagedorn J, Hollenberg CP, Gellissen G, Strasser AWM (1998) Two novel gene expression systems based on the yeasts Schwanniomyces occidentalis and Pichia stipitis. Appl Microbiol Biotechnol 50:331–338

    PubMed  Article  CAS  Google Scholar 

  • Pobbati AV, Stein A, Fasshauer D (2006) N- to C-terminal SNARE complex assembly promotes rapid membrane fusion. Science 313:673–676

    PubMed  Article  CAS  Google Scholar 

  • Pu Y, Zhang D, Singh PM, Ragauskas AJ (2008) The new forestry biofuels sector. Bioanalysis 2:58–73

    CAS  Google Scholar 

  • Rockman MV, Kruglyak L (2006) Genetics of global gene expression. Nat Rev Genet 7:862–872

    PubMed  Article  CAS  Google Scholar 

  • Rodríguez-Limas WA, Sekar K, Tyo KE (2013) Virus-like particles: the future of microbial factories and cell-free systems as platforms for vaccine development. Curr Opin Biotechnol 24(6):1089–1093

    PubMed  Article  CAS  Google Scholar 

  • Rodríguez-Limas WA, Tannenbaum V, Tyo KEJ (2015) Blocking endocytic mechanisms to improve heterologous protein titers in Saccharomyces cerevisiae. Biotechnol Bioeng 112(2):376–385

  • Romanos MA, Scorer CA, Clarke JJ (1992) Foreign gene expression in yeast: a review. Yeast 8:423–488

    PubMed  Article  CAS  Google Scholar 

  • Romanos M (1995) Advances in the use of Pichia pastoris for high-level gene expression. Curr Opin Biotechnol 6:527–533

    Article  CAS  Google Scholar 

  • Sacher M, Stone S, Ferro-Novick S (1997) The synaptobrevin-related domains of Bos1p and Sec22p. J Biolumin Chemilumin 272:17134–17138

    CAS  Google Scholar 

  • Sambrook J, Russel DB (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, New York

    Google Scholar 

  • Singhania RR, Patel AK, Sukumaran RK, Larroche C, Pandey A (2013) Role and significance of β-glucosidases in the hydrolysis of cellulose for bioethanol production. Bioresour Technol 127:500–507

    PubMed  Article  CAS  Google Scholar 

  • Sørensen A, Lübeck M, Lübeck PS, Ahring BK (2013) Fungal β-glucosidases: a bottleneck in industrial use of lignocellulosic materials. Bioanalysis 3(3):612–631

    Google Scholar 

  • Søgaard M, Tani K, Ye RR, Geromanos S, Tempst P, Kirchhausen T, Rothman JE, Söllner TH (1994) A rab protein is required for the assembly of SNARE complexes in the docking of transport vesicles. Cell 78:937–948

    PubMed  Article  Google Scholar 

  • Stanley D, Bandara A, Fraser S, Chambers SGA (2010) The ethanol stress response and ethanol tolerance of Saccharomyces cerevisiae. J Appl Microbiol 109:13–24

    PubMed  CAS  Google Scholar 

  • Stephen JD, Mabee WE, Saddler JN (2012) Will second-generation ethanol be able to compete with first-generation ethanol? Opportunities for cost reduction. Biosci Biotechnol Biochem 6:159–176

    CAS  Google Scholar 

  • Stone S, Sacher M, Mao Y, Carr C, Lyon P (1997) Bet1p activates the v-SNARE Bos1p. Mol Biol Cell 8:1175–1181

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Teste M, Duquenne M, François JM, Parrou J (2009) Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae. BMC Mol Biol 10:99

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Tsui MM, Tai WC, Banfield DK (2001) Selective formation of Sed5p-containing SNARE complexes is mediated by combinatorial binding interactions. Mol Biol Cell 12(3):521–538

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Tyo KE, Liu Z, Magnusson Y, Petranovic D, Nielsen J (2014) Impact of protein uptake and degradation on recombinant protein secretion in yeast. Appl Environ Microbiol 98(16):7149–7159

    CAS  Google Scholar 

  • Van Rensburg E, Den Haan R, Smith J, Van Zyl WH, Görgens JF (2012) The metabolic burden of cellulase expression by recombinant Saccharomyces cerevisiae Y294 in aerobic batch culture. Appl Microbiol Biotechnol 96(1):197–209

    PubMed  Article  CAS  Google Scholar 

  • Van Rooyen R, Hahn-Hägerdal B, La Grange DC, Van Zyl WH (2005) Construction of cellobiose-growing Saccharomyces cerevisiae strains. J Biotechnol 120:284–295

    PubMed  Article  CAS  Google Scholar 

  • Van Zyl JHD, Den Haan R, Van Zyl WH (2014) Over-expression of native Saccharomyces cerevisiae exocytic SNARE genes increased heterologous cellulase secretion. Appl Microbiol Biotechnol 98(12):5567–5578

    PubMed  Google Scholar 

  • Weber T, Zemelman BV, McNew JA, Westermann B, Gmachl M, Parlati F, Söllner TH, Rothman JE (1998) SNAREpins: minimal machinery for membrane fusion. Cell 92:759–772

    PubMed  Article  CAS  Google Scholar 

  • Wedekind A, O’Malley MA, Niebauer RT, Robinson AS (2006) Optimization of the human adenosine A2a receptor yields in Saccharomyces cerevisiae. Biotechnol Prog 22(5):1249–1255

    PubMed  Article  CAS  Google Scholar 

  • Weinberger A, Kamena F, Kama R, Sprang A, Gerst JE (2005) Control of Golgi morphology and function by Sed5 t-SNARE phosphorylation. Mol Biol Cell 16(10):4918–4930

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Wooding S, Pelham HR (1998) The dynamics of Golgi protein traffic visualized in living yeast cells. Mol Biol Cell 9(9):2667–2680

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  • Xin Z, Yinbo Q, Peiji G (1993) Acceleration of ethanol production from paper mill waste fiber by supplementing with β-glucosidase. Enzym Microb Technol 15:62–65

    Article  Google Scholar 

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Acknowledgments

Funding for this project was provided by the National Research Foundation (South Africa).

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Van Zyl, J.H.D., Den Haan, R. & Van Zyl, W.H. Overexpression of native Saccharomyces cerevisiae ER-to-Golgi SNARE genes increased heterologous cellulase secretion. Appl Microbiol Biotechnol 100, 505–518 (2016). https://doi.org/10.1007/s00253-015-7022-2

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Keywords

  • SNAREs
  • Cellulases
  • Secretion
  • Yeast