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Succinic semialdehyde reductase Gox1801 from Gluconobacter oxydans in comparison to other succinic semialdehyde-reducing enzymes

Abstract

Gluconobacter oxydans is an industrially important bacterium that possesses many uncharacterized oxidoreductases, which might be exploited for novel biotechnological applications. In this study, gene gox1801 was homologously overexpressed in G. oxydans and it was found that the relative expression of gox1801 was 13-fold higher than that in the control strain. Gox1801 was predicted to belong to the 3-hydroxyisobutyrate dehydrogenase-type proteins. The purified enzyme had a native molecular mass of 134 kDa and forms a homotetramer. Analysis of the enzymatic activity revealed that Gox1801 is a succinic semialdehyde reductase that used NADH and NADPH as electron donors. Lower activities were observed with glyoxal, methylglyoxal, and phenylglyoxal. The enzyme was compared to the succinic semialdehyde reductase GsSSAR from Geobacter sulfurreducens and the γ-hydroxybutyrate dehydrogenase YihU from Escherichia coli K-12. The comparison revealed that Gox1801 is the first enzyme from an aerobic bacterium reducing succinic semialdehyde with high catalytic efficiency. As a novel succinic semialdehyde reductase, Gox1801 has the potential to be used in the biotechnological production of γ-hydroxybutyrate.

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References

  • Adachi O, Moonmangmee D, Shinagawa E, Toyama H, Yamada M, Matsushita K (2003) New quinoproteins in oxidative fermentation. Biochim Biophys Acta 1647:10–17

    Article  CAS  PubMed  Google Scholar 

  • Allan WL, Clark SM, Hoover GJ, Shelp BJ (2009) Role of plant glyoxylate reductases during stress: a hypothesis. Biochem J 423:15–22

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Andriamampandry C, Siffert JC, Schmitt M, Garnier JM, Staub A, Muller C, Gobaille S, Mark J, Maitre M (1998) Cloning of a rat brain succinic semialdehyde reductase involved in the synthesis of the neuromodulator γ-hydroxybutyrate. Biochem J 334:43–50

    PubMed Central  CAS  PubMed  Google Scholar 

  • Bartsch K, von Johnn-Marteville A, Schulz A (1990) Molecular analysis of two genes of the Escherichia coli gab cluster: nucleotide sequence of the glutamate:succinic semialdehyde transaminase gene (gabT) and characterization of the succinic semialdehyde dehydrogenase gene (gabD). J Bacteriol 172:7035–7042

    PubMed Central  CAS  PubMed  Google Scholar 

  • Berg IA, Kockelkorn D, Buckel W, Fuchs G (2007) A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea. Science 318:1782–1786

    Article  CAS  PubMed  Google Scholar 

  • Black SW, Morairty SR, Chen TM, Leung AK, Wisor JP, Yamanaka A, Kilduff TS (2014) GABAB agonism promotes sleep and reduces cataplexy in murine narcolepsy. J Neurosci 34:6485–6494

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Blum H, Beier H, Gross HJ (1987) Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels. Electrophoresis 8:93–99

    Article  CAS  Google Scholar 

  • Bormann J (1988) Electrophysiology of GABAA and GABAB receptor subtypes. Trends Neurosci 11:112–116

    Article  CAS  PubMed  Google Scholar 

  • Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254

    Article  CAS  PubMed  Google Scholar 

  • Breitkreuz KE, Allan WL, Van Cauwenberghe OR, Jakobs C, Talibi D, André B, Shelp BJ (2003) A novel γ-hydroxybutyrate dehydrogenase: identification and expression of an Arabidopsis cDNA and potential role under oxygen deficiency. J Biol Chem 278:41552–41556

    Article  CAS  PubMed  Google Scholar 

  • Buchan DWA, Minneci F, Nugent TCO, Bryson K, Jones DT (2013) Scalable web services for the PSIPRED protein analysis workbench. Nucleic Acids Res 41:W349–W357

    Article  PubMed Central  PubMed  Google Scholar 

  • Caputo F, Vignoli T, Maremmani I, Bernardi M, Zoli G (2009) Gamma hydroxybutyric acid (GHB) for the treatment of alcohol dependence: a review. Int J Environ Res Public Health 6:1917–1929

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Cash CD, Maitre M, Mandel P (1979) Purification from human brain and some properties of two NADPH-linked aldehyde reductases which reduce succinic semialdehyde to 4-hydroxybutyrate. J Neurochem 33:1169–1175

    Article  CAS  PubMed  Google Scholar 

  • Chebib M, Johnston GAR (1999) The ‘ABC’ of GABA receptors: a brief review. Clin Exp Pharmacol Physiol 26:937–940

    Article  CAS  PubMed  Google Scholar 

  • Cho SW, Song MS, Kim GY, Kang WD, Choi EY, Choi SY (1993) Kinetics and mechanism of an NADPH-dependent succinic semialdehyde reductase from bovine brain. Eur J Biochem 211:757–762

    Article  CAS  PubMed  Google Scholar 

  • Choi MH, Yoon SC, Lenz RW (1999) Production of poly(3-hydroxybutyric acid-co-4-hydroxybutyric acid) and poly(4-hydroxybutyric acid) without subsequent degradation by Hydrogenophaga pseudoflava. Appl Environ Microbiol 65:1570–1577

    PubMed Central  CAS  PubMed  Google Scholar 

  • Cromlish JA, Flynn TG (1985) Identification of pig brain aldehyde reductases with the high-K m aldehyde reductase, the low-K m aldehyde reductase and aldose reductase, carbonyl reductase, and succinic semialdehyde reductase. J Neurochem 44:1485–1493

    Article  CAS  PubMed  Google Scholar 

  • De Biase D, Tramonti A, Bossa F, Visca P (1999) The response to stationary-phase stress conditions in Escherichia coli: role and regulation of the glutamic acid decarboxylase system. Mol Microbiol 32:1198–1211

    Article  PubMed  Google Scholar 

  • De Ley J, Gillis M, Swings J (1984) The genus Gluconobacter. In: Krieg NR, Holt JG (eds) Bergey’s manual of systematic bacteriology, vol 1. Williams and Wilkins, Baltimore, pp 267–278

    Google Scholar 

  • Donnelly MI, Cooper RA (1981) Two succinic semialdehyde dehydrogenases are induced when Escherichia coli K-12 is grown on γ-aminobutyrate. J Bacteriol 145:1425–1427

    PubMed Central  CAS  PubMed  Google Scholar 

  • Gallimberti L, Cibin M, Pagnin P, Sabbion R, Pani PP, Pirastu R, Ferrara SD, Gessa GL (1993) Gamma-hydroxybutyric acid for treatment of opiate withdrawal syndrome. Neuropsychopharmacology 9:77–81

    Article  CAS  PubMed  Google Scholar 

  • Gerhardt A, Çinkaya I, Linder D, Huisman G, Buckel W (2000) Fermentation of 4-aminobutyrate by Clostridium aminobutyricum: cloning of two genes involved in the formation and dehydration of 4-hydroxybutyryl-CoA. Arch Microbiol 174:189–199

    Article  CAS  PubMed  Google Scholar 

  • Gibson KM, Hoffmann GF, Hodson AK, Bottiglieri T, Jakobs C (1998) 4-hydroxybutyric acid and the clinical phenotype of succinic semialdehyde dehydrogenase deficiency, an inborn error of GABA metabolism. Neuropediatrics 29:14–22

    Article  CAS  PubMed  Google Scholar 

  • Grant SG, Jessee J, Bloom FR, Hanahan D (1990) Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants. Proc Natl Acad Sci U S A 87:4645–4649

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Hanke T, Nöh K, Noack S, Polen T, Bringer S, Sahm H, Wiechert W, Bott M (2013) Combined fluxomics and transcriptomics analysis of glucose catabolism via a partially cyclic pentose phosphate pathway in Gluconobacter oxydans 621H. Appl Environ Microbiol 79:2336–2348

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Hazer B, Steinbüchel A (2007) Increased diversification of polyhydroxyalkanoates by modification reactions for industrial and medical applications. Appl Microbiol Biotechnol 71:1–12

    Article  Google Scholar 

  • Hearl WG, Churchich JE (1985) A Mitochondrial NADP+-dependent reductase related to the 4-aminobutyrate shunt. Purification, characterization, and mechanism. J Biol Chem 260:16361–16366

    CAS  PubMed  Google Scholar 

  • Hoover GJ, Van Cauwenberghe OR, Breitkreuz KE, Clark SM, Merrill AR, Shelp BJ (2007) Characteristics of an Arabidopsis glyoxylate reductase: general biochemical properties and substrate specificity for the recombinant protein, and developmental expression and implications for glyoxylate and succinic semialdehyde metabolism in planta. Can J Bot 85:883–895

    Article  CAS  Google Scholar 

  • Hu D, Chung AL, Wu LP, Zhang X, Wu Q, Chen JC, Chen GQ (2011) Biosynthesis and characterization of polyhydroxyalkanoate block copolymer P3HB-b-P4HB. Biomacromolecules 12:3166–3173

    Article  CAS  PubMed  Google Scholar 

  • Huber H, Gallenberger M, Jahn U, Eylert E, Berg IA, Kockelkorn D, Eisenreich W, Fuchs G (2008) A dicarboxylate/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis. Proc Natl Acad Sci U S A 105:7851–7856

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Ireland LS, Harrison DJ, Neal GE, Hayes D (1998) Molecular cloning, expression and catalytic activity of a human AKR7 member of the aldo-keto reductase superfamily: evidence that the major 2-carboxybenzaldehyde reductase from human liver is a homologue of rat aflatoxin B1-aldehyde reductase. Biochem J 332:21–34

    PubMed Central  CAS  PubMed  Google Scholar 

  • Ishida K, Wang Y, Inoue Y (2001) Comonomer unit composition and thermal properties of poly(3-hydroxybutyrate-co-4-hydroxybutyrate)s biosynthesized by Ralstonia eutropha. Biomacromolecules 2:1285–1293

    Article  CAS  PubMed  Google Scholar 

  • Jendrossek D (2009) Polyhydroxyalkanoate granules are complex subcellular organelles (carbonosomes). J Bacteriol 191:3195–3202

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Jones DT (1999) Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 292:195–202

    Article  CAS  PubMed  Google Scholar 

  • Jones P, Binns D, Chang HY, Fraser M, Li W, McAnulla C, McWilliam H, Maslen J, Mitchell A, Nuka G, Pesseat S, Quinn AF, Sangrador-Vegas A, Scheremetjew M, Yong SY, Lopez R, Hunter S (2014) InterProScan 5: genome-scale protein function classification. Bioinformatics. doi:10.1093/bioinformatics/btu031

    Google Scholar 

  • Käll L, Krogh A, Sonnhammer ELL (2007) Advantages of combined transmembrane topology and signal peptide prediction—the Phobius web server. Nucleic Acids Res 35:W429–W432

    Article  PubMed Central  PubMed  Google Scholar 

  • Kallnik V, Meyer M, Deppenmeier U, Schweiger P (2010) Construction of expression vectors for protein production in Gluconobacter oxydans. J Biotechnol 145:260–265

    Google Scholar 

  • Kimura H, Ohura T, Takeishi M, Nakamura S, Doi Y (1999) Effective microbial production of poly(4-hydroxybutyrate) homopolymer by Ralstonia eutropha H16. Polym Int 48:1073–1079

    Article  CAS  Google Scholar 

  • Kockelkorn D, Fuchs G (2009) Malonic semialdehyde reductase, succinic semialdehyde reductase, and succinyl-coenzyme A reductase from Metallosphaera sedula: enzymes of the autotrophic 3-hydroxypropionate/4-hydroxybutyrate cycle in Sulfolobales. J Bacteriol 191:6352–6362

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Kovach ME, Elzer PH, Hill DS, Robertson GT, Farris MA, Roop RM II, Peterson KM (1995) Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 166:175–176

    Article  CAS  PubMed  Google Scholar 

  • Krogh A, Larsson B, von Heijne G, Sonnhammer ELL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305:567–580

    Article  CAS  PubMed  Google Scholar 

  • Kunioka M, Kawaguchi Y, Doi Y (1989) Production of biodegradable copolyesters of 3-hydroxybutyrate and 4-hydroxybutyrate by Alcaligenes eutrophus. Appl Microbiol Biotechnol 30:569–573

    CAS  Google Scholar 

  • Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685

    Article  CAS  PubMed  Google Scholar 

  • Mamelak M, Scharf MB, Woods M (1986) Treatment of narcolepsy with gamma-hydroxybutyrate. A review of clinical and sleep laboratory findings. Sleep 9:285–289

    CAS  PubMed  Google Scholar 

  • Marek LE, Henson JM (1988) Cloning and expression of the Escherichia coli K-12 sad gene. J Bacteriol 170:991–994

    PubMed Central  CAS  PubMed  Google Scholar 

  • Metzer E, Halpern YS (1990) In vivo cloning and characterization of the gabCTDP gene cluster of Escherichia coli K-12. J Bacteriol 172:3250–3256

    PubMed Central  CAS  PubMed  Google Scholar 

  • Metzner M, Germer J, Hengge R (2004) Multiple stress signal integration in the regulation of the complex σS-dependent csiD-ygaF-gabDTP operon in Escherichia coli. Mol Microbiol 51:799–811

    Article  CAS  PubMed  Google Scholar 

  • Miller JH (1972) Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor

    Google Scholar 

  • Mostafa HE, Heller KJ, Geis A (2002) Cloning of Escherichia coli lacZ and lacY genes and their expression in Gluconobacter oxydans and Acetobacter liquefaciens. Appl Environ Microbiol 68:2619–2623

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Mott JF, Grant RA, Ho YS, Platt T (1985) Maximizing gene expression from plasmid vectors containing the λ P L promotor: strategies of overproducing termination factor ρ. Proc Natl Acad Sci U S A 82:88–92

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Mullins EA, Francois JA, Kappock TJ (2008) A specialized citric acid cycle requiring succinyl-coenzyme A (CoA):acetate CaO-transferase (AarC) confers acetic acid resistance on the acidophile Acetobacter aceti. J Bacteriol 190:4933–4940

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Olijve W, Kok JJ (1979) Analysis of growth of Gluconobacter oxydans in glucose containing media. Arch Microbiol 121:283–290

    Article  CAS  Google Scholar 

  • Porter TG, Spink DC, Martin SB, Martin DL (1985) Transaminations catalysed by brain glutamate decarboxylase. Biochem J 231:705–712

    PubMed Central  CAS  PubMed  Google Scholar 

  • Prust C, Hoffmeister M, Liesegang H, Wiezer A, Fricke WF, Ehrenreich A, Gottschalk G, Deppenmeier U (2005) Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans. Nat Biotechnol 23:195–200

    Article  CAS  PubMed  Google Scholar 

  • Ramos-Vera WH, Berg IA, Fuchs G (2009) Autotrophic carbon dioxide assimilation in Thermoproteales revisited. J Bacteriol 191:4286–4297

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Ramos-Vera WH, Weiss M, Strittmatter E, Kockelkorn D, Fuchs G (2011) Identification of missing genes and enzymes for autotrophic carbon fixation in Crenarchaeota. J Bacteriol 193:1201–1211

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Rehm BH, Steinbüchel A (1999) Biochemical and genetic analysis of PHA synthases and other proteins required for PHA synthesis. Int J Biol Macromol 25:3–19

    Article  CAS  PubMed  Google Scholar 

  • Reichstein T, Grüssner A (1934) Eine ergiebige Synthese der l-Ascorbinsäure (C-vitamin). Helv Chim Acta 17:311–328

    Article  CAS  Google Scholar 

  • Rossmann MG, Moras D, Olsen KW (1974) Chemical and biological evolution of a nucleotide-binding protein. Nature 250:194–199

    Article  CAS  PubMed  Google Scholar 

  • Rumigny JF, Maitre M, Cash C, Mandel P (1980) Specific and non-specific succinic semialdehyde reductases from rat brain: isolation and properties. FEBS Lett 117:111–116

    Article  CAS  PubMed  Google Scholar 

  • Saito Y, Nakamura S, Hiramitsu M, Doi Y (1996) Microbial synthesis and properties of poly(3-hydroxybutyrate-co-4-hydroxybutyrate). Polym Int 39:169–174

    Article  CAS  Google Scholar 

  • Saito N, Robert M, Kochi H, Matsuo G, Kakazu Y, Soga T, Tomita M (2009) Metabolite profiling reveals YihU as a novel hydroxybutyrate dehydrogenase for alternative succinic semialdehyde metabolism in Escherichia coli. J Biol Chem 284:16442–16451

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor

    Google Scholar 

  • Schaller M, Schaffhauser M, Sans N, Wermuth B (1999) Cloning and expression of succinic semialdehyde reductase from human brain. Identity with aflatoxin B1 aldehyde reductase. Eur J Biochem 265:1056–1060

    Article  CAS  PubMed  Google Scholar 

  • Scharf MB, Brown D, Woods M, Brown L, Hirschowitz J (1985) The effects and effectiveness of gamma-hydroxybutyrate in patients with narcolepsy. J Clin Psychiatry 46:222–225

    CAS  PubMed  Google Scholar 

  • Schedel M (2000) Regioselective oxidation of aminosorbitol with Gluconobacter oxydans, key reaction in the industrial 1-deoxynojirimycin synthesis. In: Kelly DR (ed) Biotechnology, vol 8b. Weinheim, Wiley-VCH, pp 295–308

    Chapter  Google Scholar 

  • Schneider BL, Ruback S, Kiupakis AK, Kasbarian H, Pybus C, Reitzer L (2002) The Escherichia coli gabDTPC operon: specific γ-aminobutyrate catabolism and nonspecific induction. J Bacteriol 184:6976–6986

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Schweiger P, Volland S, Deppenmeier U (2007) Overproduction and characterization of two distinct aldehyde-oxidizing enzymes from Gluconobacter oxydans 621H. J Mol Microbiol Biotechnol 13:147–155

    Article  CAS  PubMed  Google Scholar 

  • Sievers M, Swings J (2005) Family II Acetobacteriaceae. In: Garrity G, Brenner DJ, Krieg NR, Staley JT (eds) Bergey’s manual of systematic bacteriology, vol 2c. Springer, New York, pp 41–95

    Google Scholar 

  • Söhling B, Gottschalk G (1996) Molecular analysis of the anaerobic succinate degradation pathway in Clostridium kluyveri. J Bacteriol 178:871–880

    PubMed Central  PubMed  Google Scholar 

  • Steinbüchel A, Valentin HE (1995) Diversity of bacterial polyhydroxyalkanoic acids. FEMS Microbiol Lett 128:219–228

    Article  Google Scholar 

  • Sudesh K, Fukui T, Taguchi K, Iwata T, Doi Y (1999) Improved production of poly(4-hydroxybutyrate) by Comamonas acidovorans and its freeze-fracture morphology. Int J Biol Macromol 25:79–85

    Article  CAS  PubMed  Google Scholar 

  • Towbin H, Staehelin T, Gordon J (1979) Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc Natl Acad Sci U S A 76:4350–4354

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Wang C, Zhang HB, Wang LH, Zhang LH (2006) Succinic semialdehyde couples stress response to quorum-sensing signal decay in Agrobacterium tumefaciens. Mol Microbiol 62:45–56

    Article  CAS  PubMed  Google Scholar 

  • Wolff RA, Kenealy WR (1995) Purification and characterization of the oxygen-sensitive 4-hydroxybutanoate dehydrogenase from Clostridium kluyveri. Protein Expr Purif 6:206–212

    Article  CAS  PubMed  Google Scholar 

  • Wolff RA, Urben GW, O’Herrin SM, Kenealy WR (1993) Dehydrogenases involved in the conversion of succinate to 4-hydroxybutanoate by Clostridium kluyveri. Appl Environ Microbiol 59:1876–1882

    PubMed Central  CAS  PubMed  Google Scholar 

  • Yuan Z, Yin B, Wei D, Yuan YA (2013) Structural basis for cofactor and substrate selection by cyanobacterium succinic semialdehyde dehydrogenase. J Struct Biol 182:125–135

    Article  CAS  PubMed  Google Scholar 

  • Zhang Y, Gao X, Zheng Y, Garavito RM (2011) Identification of succinic semialdehyde reductases from Geobacter: expression, purification, crystallization, preliminary functional, and crystallographic analysis. Acta Biochim Biophys Sin 43:996–1002

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

This project was supported by funds from NRW Strategy project BioSC (project GLUFACT).

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Correspondence to Uwe Deppenmeier.

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Meyer, M., Schweiger, P. & Deppenmeier, U. Succinic semialdehyde reductase Gox1801 from Gluconobacter oxydans in comparison to other succinic semialdehyde-reducing enzymes. Appl Microbiol Biotechnol 99, 3929–3939 (2015). https://doi.org/10.1007/s00253-014-6191-8

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  • DOI: https://doi.org/10.1007/s00253-014-6191-8

Keywords

  • Acetic acid bacteria
  • Incomplete oxidation
  • Oxidoreductase
  • Biotransformation
  • Aldehyde reduction
  • γ-Hydroxybutyrate