Adam AC, Bornhövd C, Prokisch H, Neupert W, Hell K (2006) The Nfs1 interacting protein Isd11 has an essential role in Fe/S cluster biogenesis in mitochondria. EMBO J 25:174–183
CAS
PubMed
Article
PubMed Central
Google Scholar
Adinolfi S, Iannuzzi C, Prischi F, Pastore C, Iametti S, Martin SR, Bonomi F, Pastore A (2009) Bacterial frataxin CyaY is the gatekeeper of iron–sulfur cluster formation catalyzed by IscS. Nat Struct Mol Biol 16:390–396
CAS
PubMed
Article
PubMed Central
Google Scholar
Agar JN, Krebs C, Frazzon J, Huynh BH, Dean DR, Johnson MK (2000) IscU as a scaffold for iron–sulfur cluster biosynthesis: sequential assembly of [2Fe–2S] and [4Fe–4S] clusters in IscU. Biochemistry 39:7856–7862
CAS
PubMed
Article
PubMed Central
Google Scholar
Albrecht AG, Netz DJ, Miethke M, Pierik AJ, Burghaus O, Peuckert F, Lill R, Marahiel MA (2010) SufU is an essential iron–sulfur cluster scaffold protein in Bacillus subtilis. J Bacteriol 192:1643–1651
CAS
PubMed
PubMed Central
Article
Google Scholar
Angelini S, Gerez C, Ollagnier-de Choudens S, Sanakis Y, Fontecave M, Barras F, Py B (2008) NfuA, a new factor required for maturing Fe/S proteins in Escherichia coli under oxidative stress and iron starvation conditions. J Biol Chem 283:14084–14091
CAS
PubMed
Article
PubMed Central
Google Scholar
Balk J, Pilon M (2011) Ancient and essential: the assembly of iron–sulfur clusters in plants. Trends Plant Sci 16:218–226. doi:https://doi.org/10.1016/j.tplants.2010.12.006
CAS
PubMed
Article
PubMed Central
Google Scholar
Bandyopadhyay S, Naik SG, O'Carroll IP, Huynh BH, Dean DR, Johnson MK, Dos Santos PC (2008) A proposed role for the Azotobacter vinelandii NfuA protein as an intermediate iron–sulfur cluster carrier. J Biol Chem 283:14092–14099
CAS
PubMed
PubMed Central
Article
Google Scholar
Begley TP, Downs DM, Ealick SE, McLafferty FW, Van Loon AP, Taylor S, Campobasso N, Chiu HJ, Kinsland C, Reddick JJ, Xi J (1999) Thiamin biosynthesis in prokaryotes. Arch Microbiol 171:293–300
CAS
PubMed
Article
PubMed Central
Google Scholar
Behshad E, Parkin SE, Bollinger JM Jr (2004) Mechanism of cysteine desulfurase Slr0387 from Synechocystis sp. PCC 6803: kinetic analysis of cleavage of the persulfide intermediate by chemical reductants. Biochemistry 43:12220–12226
CAS
PubMed
Article
PubMed Central
Google Scholar
Behshad E, Bollinger JM Jr (2009) Kinetic analysis of cysteine desulfurase CD0387 from Synechocystis sp. PCC 6803: formation of the persulfide intermediate. Biochemistry 48:12014–12023
CAS
PubMed
Article
PubMed Central
Google Scholar
Beinert H (2000) Iron–sulfur proteins: ancient structures, still full of surprises. J Biol Inorg Chem 5:2–15
CAS
PubMed
Article
PubMed Central
Google Scholar
Bergstrom DE, Leonard NJ (1972) Structure of the borohydride reduction product of photolinked 4-thiouracil and cytosine. Fluorescent probe of transfer ribonucleic acid tertiary structure. J Am Chem Soc 94:6178–6182
CAS
PubMed
Article
PubMed Central
Google Scholar
Berkovitch F, Nicolet Y, Wan JT, Jarrett JT, Drennan CL (2004) Crystal structure of biotin synthase, an S-adenosylmethionine-dependent radical enzyme. Science 303:76–79
CAS
PubMed
PubMed Central
Article
Google Scholar
Beynon J, Ally A, Cannon M, Cannon F, Jacobson M, Cash V, Dean D (1987) Comparative organization of nitrogen fixation-specific genes from Azotobacter vinelandii and Klebsiella pneumoniae: DNA sequence of the nifUSV genes. J Bacteriol 169:4024–4029
CAS
PubMed
PubMed Central
Article
Google Scholar
Biederbick A, Stehling O, Rosser R, Niggemeyer B, Nakai Y, Elsässer HP, Lill R (2006) Role of human mitochondrial Nfs1 in cytosolic iron-sulfur protein biogenesis and iron regulation. Mol Cell Biol 26:5675–5687
CAS
PubMed
PubMed Central
Article
Google Scholar
Bonomi F, Iametti S, Ta D, Vickery LE (2005) Multiple turnover transfer of [2Fe2S] clusters by the iron–sulfur cluster assembly scaffold proteins IscU and IscA. J Biol Chem 280:29513–29518
CAS
PubMed
Article
PubMed Central
Google Scholar
Bonomi F, Iametti S, Morleo A, Ta D, Vickery LE (2008) Studies on the mechanism of catalysis of iron–sulfur cluster transfer from IscU[2Fe2S] by HscA/HscB chaperones. Biochemistry 47:12795–12801
CAS
PubMed
Article
PubMed Central
Google Scholar
Broach RB, Jarrett JT (2006) Role of the [2Fe-2S]2+ cluster in biotin synthase: mutagenesis of the atypical metal ligand arginine 260. Biochemistry 45:14166–14174
CAS
PubMed
PubMed Central
Article
Google Scholar
Cavazza C, Contreras-Martel C, Pieulle L, Chabrière E, Hatchikian EC, Fontecilla-Camps JC (2006) Flexibility of thiamine diphosphate revealed by kinetic crystallographic studies of the reaction of pyruvate-ferredoxin oxidoreductase with pyruvate. Structure 14:217–224
CAS
PubMed
Article
PubMed Central
Google Scholar
Chahal HK, Dai Y, Saini A, Ayala-Castro C, Outten FW (2009) The SufBCD Fe–S scaffold complex interacts with SufA for Fe–S cluster transfer. Biochemistry 48:10644–10653
CAS
PubMed
PubMed Central
Article
Google Scholar
Challand MR, Martins FT, Roach PL (2010) Catalytic activity of the anaerobic tyrosine lyase required for thiamine biosynthesis in Escherichia coli. J Biol Chem 285:5240–5248
CAS
PubMed
Article
PubMed Central
Google Scholar
Chandramouli K, Johnson MK (2006) HscA and HscB stimulate [2Fe–2S] cluster transfer from IscU to apoferredoxin in an ATP-dependent reaction. Biochemistry 45:11087–11095
CAS
PubMed
PubMed Central
Article
Google Scholar
Chandramouli K, Unciuleac MC, Naik S, Dean DR, Huynh BH, Johnson MK (2007) Formation and properties of [4Fe–4S] clusters on the IscU scaffold protein. Biochemistry 46:6804–6811
CAS
PubMed
Article
PubMed Central
Google Scholar
Chatterjee A, Han X, McLafferty FW, Begley TP (2006) Biosynthesis of thiamin thiazole: determination of the regiochemistry of the S/O acyl shift by using 1,4-dideoxy-D-xylulose-5-phosphate. Angew Chem Int Ed Engl 45:3507–3510
CAS
PubMed
Article
PubMed Central
Google Scholar
Cicchillo RM, Lee KH, Baleanu-Gogonea C, Nesbitt NM, Krebs C, Booker SJ (2004) Escherichia coli lipoyl synthase binds two distinct [4Fe–4S] clusters per polypeptide. Biochemistry 43:11770–11781
CAS
PubMed
Article
PubMed Central
Google Scholar
Cicchillo RM, Booker SJ (2005) Mechanistic investigations of lipoic acid biosynthesis in Escherichia coli: both sulfur atoms in lipoic acid are contributed by the same lipoyl synthase polypeptide. J Am Chem Soc 127:2860–2861
CAS
PubMed
Article
PubMed Central
Google Scholar
Cupp-Vickery JR, Urbina H, Vickery LE (2003) Crystal structure of IscS, a cysteine desulfurase from Escherichia coli. J Mol Biol 330:1049–1059
CAS
PubMed
Article
PubMed Central
Google Scholar
Cupp-Vickery JR, Peterson JC, Ta DT, Vickery LE (2004) Crystal structure of the molecular chaperone HscA substrate binding domain complexed with the IscU recognition peptide ELPPVKIHC. J Mol Biol 342:1265–1278
CAS
PubMed
Article
PubMed Central
Google Scholar
Desnoyers G, Morissette A, Prévost K, Massé E (2009) Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA. EMBO J 28:1551–1561
CAS
PubMed
PubMed Central
Article
Google Scholar
Dos Santos PC, Johnson DC, Ragle BE, Unciuleac MC, Dean DR (2007) Controlled expression of nif and isc iron–sulfur protein maturation components reveals target specificity and limited functional replacement between the two systems. J Bacteriol 189:2854–2862
PubMed
PubMed Central
Article
CAS
Google Scholar
Dos Santos PC, Dean DR (2008) A newly discovered role for iron–sulfur clusters. Proc Natl Acad Sci USA 105:11589–11590
PubMed
Article
PubMed Central
Google Scholar
Douglas P, Kriek M, Bryant P, Roach PL (2006) Lipoyl synthase inserts sulfur atoms into an octanoyl substrate in a stepwise manner. Angew Chem Int Ed Engl 45:5197–5199
CAS
PubMed
Article
PubMed Central
Google Scholar
Drennan CL, Peters JW (2003) Surprising cofactors in metalloenzymes. Curr Opin Struct Biol 13:220–226
CAS
PubMed
Article
PubMed Central
Google Scholar
Eccleston JF, Petrovic A, Davis CT, Rangachari K, Wilson RJ (2006) The kinetic mechanism of the SufC ATPase: the cleavage step is accelerated by SufB. J Biol Chem 281:8371–8378
CAS
PubMed
Article
PubMed Central
Google Scholar
Esaki N, Nakamura T, Tanaka H, Soda K (1982) Selenocysteine lyase, a novel enzyme that specifically acts on selenocysteine. Mammalian distribution and purification and properties of pig liver enzyme. J Biol Chem 257:4386–4391
CAS
PubMed
PubMed Central
Google Scholar
Favre A, Yaniv M, Michelson AM (1969) The photochemistry of 4-thiouridine in Escherichia coli t-RNA
Val1
. Biochem Biophys Res Commun 37:266–271
CAS
PubMed
Article
PubMed Central
Google Scholar
Favre A, Michelson AM, Yaniv M (1971) Photochemistry of 4-thiouridine in Escherichia coli transfer RNA
Val1
. J Mol Biol 58:367–379
CAS
PubMed
Article
PubMed Central
Google Scholar
Flint DH (1996) Escherichia coli contains a protein that is homologous in function and N-terminal sequence to the protein encoded by the nifS gene of Azotobacter vinelandii and that can participate in the synthesis of the Fe–S cluster of dihydroxy-acid dehydratase. J Biol Chem 271:16068–16074
CAS
PubMed
Article
PubMed Central
Google Scholar
Frey PA, Hegeman AD, Ruzicka FJ (2008) The Radical SAM Superfamily. Crit Rev Biochem Mol Biol 43:63–88
CAS
PubMed
Article
PubMed Central
Google Scholar
Fuezery AK, Oh JJ, Ta DT, Vickery LE, Markley JL (2011) Three hydrophobic amino acids in Escherichia coli HscB make the greatest contribution to the stability of the HscB-IscU complex. BMC Biochem 12:3
Article
CAS
Google Scholar
Giel JL, Rodionov D, Liu M, Blattner FR, Kiley PJ (2006) IscR-dependent gene expression links iron–sulphur cluster assembly to the control of O2-regulated genes in Escherichia coli. Mol Microbiol 60:1058–1075
CAS
PubMed
Article
PubMed Central
Google Scholar
Grishin NV, Phillips MA, Goldsmith EJ (1995) Modeling of the spatial structure of eukaryotic ornithine decarboxylases. Protein Sci 4:1291–1304
CAS
PubMed
PubMed Central
Article
Google Scholar
Gupta V, Sendra M, Naik SG, Chahal HK, Huynh BH, Outten FW, Fontecave M, Ollagnier de Choudens S (2009) Native Escherichia coli SufA, coexpressed with SufBCDSE, purifies as a [2Fe–2S] protein and acts as an Fe–S transporter to Fe–S target enzymes. J Am Chem Soc 131:6149–6153
CAS
PubMed
PubMed Central
Article
Google Scholar
Hernández HL, Pierrel F, Elleingand E, Garcia-Serres R, Huynh BH, Johnson MK, Fontecave M, Atta M (2007) MiaB, a bifunctional radical-S-adenosylmethionine enzyme involved in the thiolation and methylation of tRNA, contains two essential [4Fe-4S] clusters. Biochemistry 46:5140–5147
PubMed
Article
CAS
PubMed Central
Google Scholar
Hille R (2002) Molybdenum and tungsten in biology. Trends Biochem Sci 27:360–367
CAS
PubMed
Article
PubMed Central
Google Scholar
Hoff KG, Ta DT, Tapley TL, Silberg JJ, Vickery LE (2002) Hsc66 substrate specificity is directed toward a discrete region of the iron–sulfur cluster template protein IscU. J Biol Chem 277:27353–27359
CAS
PubMed
Article
PubMed Central
Google Scholar
Hoff KG, Cupp-Vickery JR, Vickery LE (2003) Contributions of the LPPVK motif of the iron–sulfur template protein IscU to interactions with the Hsc66-Hsc20 chaperone system. J Biol Chem 278:37582–37589
CAS
PubMed
Article
PubMed Central
Google Scholar
Ikeuchi Y, Shigi N, Kato J, Nishimura A, Suzuki T (2006) Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions. Mol Cell 21:97–108
CAS
PubMed
Article
PubMed Central
Google Scholar
Jacobson MR, Cash VL, Weiss MC, Laird NF, Newton WE, Dean DR (1989) Biochemical and genetic analysis of the nifUSVWZM cluster from Azotobacter vinelandii. Mol Gen Genet 219:49–57
CAS
PubMed
Article
PubMed Central
Google Scholar
Jameson GN, Cosper MM, Hernández HL, Johnson MK, Huynh BH (2004) Role of the [2Fe–2S] cluster in recombinant Escherichia coli biotin synthase. Biochemistry 43:2022–2031
CAS
PubMed
Article
PubMed Central
Google Scholar
Jang S, Imlay JA (2010) Hydrogen peroxide inactivates the Escherichia coli Isc iron–sulphur assembly system, and OxyR induces the Suf system to compensate. Mol Microbiol 78:1448–1467
CAS
PubMed
PubMed Central
Article
Google Scholar
Johnson DC, Dean DR, Smith AD, Johnson MK (2005) Structure, function, and formation of biological iron–sulfur clusters. Annu Rev Biochem 74:247–281
CAS
PubMed
Article
PubMed Central
Google Scholar
Johnson DC, Unciuleac MC, Dean DR (2006) Controlled expression and functional analysis of iron–sulfur cluster biosynthetic components within Azotobacter vinelandii. J Bacteriol 188:7551–7561
CAS
PubMed
PubMed Central
Article
Google Scholar
Kaiser JT, Clausen T, Bourenkow GP, Bartunik HD, Steinbacher S, Huber R (2000) Crystal structure of a NifS-like protein from Thermotoga maritima: implications for iron sulphur cluster assembly. J Mol Biol 297:451–464
CAS
PubMed
Article
PubMed Central
Google Scholar
Kakuta Y, Horio T, Takahashi Y, Fukuyama K (2001) Crystal structure of Escherichia coli Fdx, an adrenodoxin-type ferredoxin involved in the assembly of iron–sulfur clusters. Biochemistry 40:11007–11012
CAS
PubMed
Article
PubMed Central
Google Scholar
Kambampati R, Lauhon CT (2000) Evidence for the transfer of sulfane sulfur from IscS to ThiI during the in vitro biosynthesis of 4-thiouridine in Escherichia coli tRNA. J Biol Chem 275:10727–10730
CAS
PubMed
Article
PubMed Central
Google Scholar
Kambampati R, Lauhon CT (2003) MnmA and IscS are required for in vitro 2-thiouridine biosynthesis in Escherichia coli. Biochemistry 42:1109–1117
CAS
PubMed
Article
PubMed Central
Google Scholar
Kato S, Mihara H, Kurihara T, Yoshimura T, Esaki N (2000) Gene cloning, purification, and characterization of two cyanobacterial NifS homologs driving iron–sulfur cluster formation. Biosci Biotechnol Biochem 64:2412–2419
CAS
PubMed
Article
PubMed Central
Google Scholar
Kato S, Mihara H, Kurihara T, Takahashi Y, Tokumoto U, Yoshimura T, Esaki N (2002) Cys-328 of IscS and Cys-63 of IscU are the sites of disulfide bridge formation in a covalently bound IscS/IscU complex: implications for the mechanism of iron–sulfur cluster assembly. Proc Natl Acad Sci USA 99:5948–5952
CAS
PubMed
Article
PubMed Central
Google Scholar
Kim JH, Füzéry AK, Tonelli M, Ta DT, Westler WM, Vickery LE, Markley JL (2009) Structure and dynamics of the iron-sulfur cluster assembly scaffold protein IscU and its interaction with the cochaperone HscB. Biochemistry 48:6062–6071
CAS
PubMed
PubMed Central
Article
Google Scholar
Kirby J, Wright F, Flint HJ (1998) A cysteine desulphurase gene from the cellulolytic rumen anaerobe Ruminococcus flavefaciens. Biochim Biophys Acta 1386:233–237
CAS
PubMed
Article
PubMed Central
Google Scholar
Kessler D, Papenbrock J (2005) Iron–sulfur cluster biosynthesis in photosynthetic organisms. Photosynth Res 86:391–407
CAS
PubMed
Article
PubMed Central
Google Scholar
Kitaoka S, Wada K, Hasegawa Y, Minami Y, Fukuyama K, Takahashi Y (2006) Crystal structure of Escherichia coli SufC, an ABC-type ATPase component of the SUF iron–sulfur cluster assembly machinery. FEBS Lett 580:137–143
CAS
PubMed
Article
PubMed Central
Google Scholar
Kolman C, Söll D (1993) SPL1-1, a Saccharomyces cerevisiae mutation affecting tRNA splicing. J Bacteriol 175:1433–1442
CAS
PubMed
PubMed Central
Article
Google Scholar
Kramer GF, Baker JC, Ames BN (1988) Near-UV stress in Salmonella typhimurium: 4-thiouridine in tRNA, ppGpp, and ApppGpp as components of an adaptive response. J Bacteriol 170:2344–2351
CAS
PubMed
PubMed Central
Article
Google Scholar
Krebs C, Agar JN, Smith AD, Frazzon J, Dean DR, Huynh BH, Johnson MK (2001) IscA, an alternate scaffold for Fe–S cluster biosynthesis. Biochemistry 40:14069–14080
CAS
PubMed
Article
PubMed Central
Google Scholar
Kriek M, Martins F, Challand MR, Croft A, Roach PL (2007a) Thiamine biosynthesis in Escherichia coli: identification of the intermediate and by-product derived from tyrosine. Angew Chem Int Ed Engl 46:9223–9226
CAS
PubMed
Article
PubMed Central
Google Scholar
Kriek M, Martins F, Leonardi R, Fairhurst SA, Lowe DJ, Roach PL (2007b) Thiazole synthase from Escherichia coli: an investigation of the substrates and purified proteins required for activity in vitro. J Biol Chem 282:17413–17423
CAS
PubMed
Article
PubMed Central
Google Scholar
Kurihara T, Mihara H, Kato S, Yoshimura T, Esaki N (2003) Assembly of iron–sulfur clusters mediated by cysteine desulfurases, IscS, CsdB and CSD, from Escherichia coli. Biochim Biophys Acta 1647:303–309
CAS
PubMed
Article
PubMed Central
Google Scholar
Kushnir S, Babiychuk E, Storozhenko S, Davey MW, Papenbrock J, De Rycke R, Engler G, Stephan UW, Lange H, Kispal G, Lill R, Van Montagu M (2001) A mutation of the mitochondrial ABC transporter Sta1 leads to dwarfism and chlorosis in the Arabidopsis mutant starik. Plant Cell 13:89–100
CAS
PubMed
PubMed Central
Article
Google Scholar
Land T, Rouault TA (1998) Targeting of a human iron–sulfur cluster assembly enzyme, nifs, to different subcellular compartments is regulated through alternative AUG utilization. Mol Cell 2:807–815
CAS
PubMed
Article
PubMed Central
Google Scholar
Lauhon CT, Kambampati R (2000) The iscS gene in Escherichia coli is required for the biosynthesis of 4-thiouridine, thiamin, and NAD. J Biol Chem 275:20096–20103
CAS
PubMed
Article
PubMed Central
Google Scholar
Layer G, Ollagnier-de Choudens S, Sanakis Y, Fontecave M (2006) Iron–sulfur cluster biosynthesis: characterization of Escherichia coli CYaY as an iron donor for the assembly of [2Fe-2S] clusters in the scaffold IscU. J Biol Chem 281:16256–16263
CAS
PubMed
Article
PubMed Central
Google Scholar
Layer G, Gaddam SA, Ayala-Castro CN, Ollagnier-de Choudens S, Lascoux D, Fontecave M, Outten FW (2007) SufE transfers sulfur from SufS to SufB for iron–sulfur cluster assembly. J Biol Chem 282:13342–13350
CAS
PubMed
Article
PubMed Central
Google Scholar
Lee JH, Yeo WS, Roe JH (2004) Induction of the sufA operon encoding Fe–S assembly proteins by superoxide generators and hydrogen peroxide: involvement of OxyR, IHF and an unidentified oxidant-responsive factor. Mol Microbiol 51:1745–1755
CAS
Article
Google Scholar
Lee KC, Yeo WS, Roe JH (2008) Oxidant-responsive induction of the suf operon, encoding a Fe–S assembly system, through Fur and IscR in Escherichia coli. J Bacteriol 190:8244–8247
CAS
PubMed
PubMed Central
Article
Google Scholar
Leimkühler S, Rajagopalan KV (2001) A sulfurtransferase is required in the transfer of cysteine sulfur in the in vitro synthesis of molybdopterin from precursor Z in Escherichia coli. J Biol Chem 276:22024–22031
PubMed
Article
PubMed Central
Google Scholar
Léon S, Touraine B, Briat JF, Lobréaux S (2002) The AtNFS2 gene from Arabidopsis thaliana encodes a NifS-like plastidial cysteine desulphurase. Biochem J 366:557–564
PubMed
PubMed Central
Article
Google Scholar
Leonardi R, Roach PL (2004) Thiamine biosynthesis in Escherichia coli: in vitro reconstitution of the thiazole synthase activity. J Biol Chem 279:17054–17062
CAS
PubMed
Article
PubMed Central
Google Scholar
Leong-Morgenthaler P, Oliver SG, Hottinger H, Söll D (1994) A Lactobacillus nifS-like gene suppresses an Escherichia coli transaminase B mutation. Biochimie 76:45–49
CAS
PubMed
Article
PubMed Central
Google Scholar
Li K, Tong WH, Hughes RM, Rouault TA (2006) Roles of the mammalian cytosolic cysteine desulfurase, ISCS, and scaffold protein, ISCU, in iron–sulfur cluster assembly. J Biol Chem 281:12344–12351
CAS
PubMed
Article
PubMed Central
Google Scholar
Lill R, Mühlenhoff U (2008) Maturation of iron–sulfur proteins in eukaryotes: mechanisms, connected processes, and diseases. Annu Rev Biochem 77:669–700
CAS
PubMed
Article
PubMed Central
Google Scholar
Lill R (2009) Function and biogenesis of iron–sulphur proteins. Nature 460:831–838
CAS
PubMed
Article
PubMed Central
Google Scholar
Loiseau L, Ollagnier-de Choudens S, Lascoux D, Forest E, Fontecave M, Barras F (2005) Analysis of the heteromeric CsdA–CsdE cysteine desulfurase, assisting Fe–S cluster biogenesis in Escherichia coli. J Biol Chem 280:26760–26769
CAS
PubMed
Article
PubMed Central
Google Scholar
Loiseau L, Gerez C, Bekker M, Ollagnier-de Choudens S, Py B, Sanakis Y, Teixeira de Mattos J, Fontecave M, Barras F (2007) ErpA, an iron sulfur (Fe S) protein of the A-type essential for respiratory metabolism in Escherichia coli. Proc Natl Acad Sci USA 104:13626–13631
CAS
PubMed
Article
PubMed Central
Google Scholar
Marelja Z, Stöcklein W, Nimtz M, Leimkühler S (2008) A novel role for human Nfs1 in the cytoplasm: Nfs1 acts as a sulfur donor for MOCS3, a protein involved in molybdenum cofactor biosynthesis. J Biol Chem 283:25178–25185
CAS
PubMed
Article
PubMed Central
Google Scholar
Mendel RR, Bittner F (2006) Cell biology of molybdenum. Biochim Biophys Acta 1763:621–635
CAS
PubMed
Article
PubMed Central
Google Scholar
Mihara H, Kurihara T, Yoshimura T, Soda K, Esaki N (1997) Cysteine sulfinate desulfinase, a NIFS-like protein of Escherichia coli with selenocysteine lyase and cysteine desulfurase activities. Gene cloning, purification, and characterization of a novel pyridoxal enzyme. J Biol Chem 272:22417–22424
CAS
PubMed
Article
PubMed Central
Google Scholar
Mihara H, Maeda M, Fujii T, Kurihara T, Hata Y, Esaki N (1999) A nifS-like gene, csdB, encodes an Escherichia coli counterpart of mammalian selenocysteine lyase. Gene cloning, purification, characterization and preliminary x-ray crystallographic studies. J Biol Chem 274:14768–14772
CAS
PubMed
Article
PubMed Central
Google Scholar
Mihara H, Kurihara T, Yoshimura T, Esaki N (2000a) Kinetic and mutational studies of three NifS homologs from Escherichia coli: mechanistic difference between L-cysteine desulfurase and L-selenocysteine lyase reactions. J Biochem 127:559–567
CAS
PubMed
Article
PubMed Central
Google Scholar
Mihara H, Kurihara T, Watanabe T, Yoshimura T, Esaki N (2000b) cDNA cloning, purification, and characterization of mouse liver selenocysteine lyase. Candidate for selenium delivery protein in selenoprotein synthesis. J Biol Chem 275:6195–6200
CAS
PubMed
Article
PubMed Central
Google Scholar
Mihara H, Esaki N (2002) Bacterial cysteine desulfurases: their function and mechanisms. Appl Microbiol Biotechnol 60:12–23
CAS
PubMed
Article
PubMed Central
Google Scholar
Mihara H, Fujii T, Kato S, Kurihara T, Hata Y, Esaki N (2002) Structure of external aldimine of Escherichia coli CsdB, an IscS/NifS homolog: implications for its specificity toward selenocysteine. J Biochem 131:679–685
CAS
PubMed
Article
PubMed Central
Google Scholar
Morimoto K, Yamashita E, Kondou Y, Lee SJ, Arisaka F, Tsukihara T, Nakai M (2006) The asymmetric IscA homodimer with an exposed [2Fe–2S] cluster suggests the structural basis of the Fe–S cluster biosynthetic scaffold. J Mol Biol 360:117–132
CAS
PubMed
Article
PubMed Central
Google Scholar
Mueller EG, Palenchar PM, Buck CJ (2001) The role of the cysteine residues of ThiI in the generation of 4-thiouridine in tRNA. J Biol Chem 276:33588–33595
CAS
PubMed
Article
PubMed Central
Google Scholar
Mueller EG (2006) Trafficking in persulfides: delivering sulfur in biosynthetic pathways. Nat Chem Biol 2:185–194
CAS
PubMed
Article
PubMed Central
Google Scholar
Mühlenhoff U, Balk J, Richhardt N, Kaiser JT, Sipos K, Kispal G, Lill R (2004) Functional characterization of the eukaryotic cysteine desulfurase Nfs1p from Saccharomyces cerevisiae. J Biol Chem 279:36906–36915
PubMed
Article
CAS
PubMed Central
Google Scholar
Mulligan ME, Haselkorn R (1989) Nitrogen fixation (nif) genes of the cyanobacterium Anabaena species strain PCC 7120. The nifB-fdxN-nifS-nifU operon. J Biol Chem 264:19200–19207
CAS
PubMed
PubMed Central
Google Scholar
Naamati A, Regev-Rudzki N, Galperin S, Lill R, Pines O (2009) Dual targeting of Nfs1 and discovery of its novel processing enzyme, Icp55. J Biol Chem 284:30200–30208
CAS
PubMed
PubMed Central
Article
Google Scholar
Nakai Y, Nakai M, Lill R, Suzuki T, Hayashi H (2007) Thio modification of yeast cytosolic tRNA is an iron–sulfur protein-dependent pathway. Mol Cell Biol 27:2841–2847
CAS
PubMed
PubMed Central
Article
Google Scholar
Nakai Y, Nakai M, Hayashi H (2008) Thio-modification of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems. J Biol Chem 283:27469–27476
CAS
PubMed
Article
PubMed Central
Google Scholar
Nakamura M, Saeki K, Takahashi Y (1999) Hyperproduction of recombinant ferredoxins in Escherichia coli by coexpression of the ORF1-ORF2-iscS-iscU-iscA-hscB-hscA-fdx-ORF3 gene cluster. J Biochem 126:10–18
CAS
PubMed
Article
PubMed Central
Google Scholar
Neumann M, Stöcklein W, Walburger A, Magalon A, Leimkühler S (2007) Identification of a Rhodobacter capsulatusL-cysteine desulfurase that sulfurates the molybdenum cofactor when bound to XdhC and before its insertion into xanthine dehydrogenase. Biochemistry 46:9586–9595
CAS
PubMed
Article
PubMed Central
Google Scholar
Numata T, Fukai S, Ikeuchi Y, Suzuki T, Nureki O (2006a) Structural basis for sulfur relay to RNA mediated by heterohexameric TusBCD complex. Structure 14:357–366
CAS
PubMed
Article
PubMed Central
Google Scholar
Numata T, Ikeuchi Y, Fukai S, Suzuki T, Nureki O (2006b) Snapshots of tRNA sulphuration via an adenylated intermediate. Nature 442:419–424
CAS
PubMed
Article
PubMed Central
Google Scholar
Ollagnier-de-Choudens S, Sanakis Y, Fontecave M (2004) SufA/IscA: reactivity studies of a class of scaffold proteins involved in [Fe–S] cluster assembly. J Biol Inorg Chem 9:828–838
CAS
PubMed
Article
PubMed Central
Google Scholar
Olson JW, Agar JN, Johnson MK, Maier RJ (2000) Characterization of the NifU and NifS Fe–S cluster formation proteins essential for viability in Helicobacter pylori. Biochemistry 39:16213–16219
CAS
PubMed
Article
PubMed Central
Google Scholar
Omi R, Kurokawa S, Mihara H, Hayashi H, Goto M, Miyahara I, Kurihara T, Hirotsu K, Esaki N (2010) Reaction mechanism and molecular basis for selenium/sulfur discrimination of selenocysteine lyase. J Biol Chem 285:12133–12139
CAS
PubMed
PubMed Central
Article
Google Scholar
Outten FW, Wood MJ, Muñoz FM, Storz G (2003) The SufE protein and the SufBCD complex enhance SufS cysteine desulfurase activity as part of a sulfur transfer pathway for Fe-S cluster assembly in Escherichia coli. J Biol Chem 278:45713–45719
CAS
PubMed
Article
PubMed Central
Google Scholar
Outten FW, Djaman O, Storz G (2004) A suf operon requirement for Fe–S cluster assembly during iron starvation in Escherichia coli. Mol Microbiol 52:861–872
CAS
PubMed
Article
PubMed Central
Google Scholar
Palenchar PM, Buck CJ, Cheng H, Larson TJ, Mueller EG (2000) Evidence that ThiI, an enzyme shared between thiamin and 4-thiouridine biosynthesis, may be a sulfurtransferase that proceeds through a persulfide intermediate. J Biol Chem 275:8283–8286
CAS
PubMed
Article
PubMed Central
Google Scholar
Pastore C, Adinolfi S, Huynen MA, Rybin V, Martin S, Mayer M, Bukau B, Pastore A (2006) YfhJ, a molecular adaptor in iron–sulfur cluster formation or a frataxin-like protein? Structure 14:857–867
CAS
PubMed
Article
PubMed Central
Google Scholar
Patzer SI, Hantke K (1999) SufS is a NifS-like protein, and SufD is necessary for stability of the [2Fe–2S] FhuF protein in Escherichia coli. J Bacteriol 181:3307–3309
CAS
PubMed
PubMed Central
Article
Google Scholar
Petrovic A, Davis CT, Rangachari K, Clough B, Wilson RJ, Eccleston JF (2008) Hydrodynamic characterization of the SufBC and SufCD complexes and their interaction with fluorescent adenosine nucleotides. Protein Sci 17:1264–1274
CAS
PubMed
PubMed Central
Article
Google Scholar
Pierrel F, Björk GR, Fontecave M, Atta M (2002) Enzymatic modification of tRNAs: MiaB is an iron–sulfur protein. J Biol Chem 277:13367–13370
CAS
PubMed
Article
PubMed Central
Google Scholar
Pierrel F, Douki T, Fontecave M, Atta M (2004) MiaB protein is a bifunctional radical-S-adenosylmethionine enzyme involved in thiolation and methylation of tRNA. J Biol Chem 279:47555–47563
CAS
PubMed
Article
PubMed Central
Google Scholar
Pilon-Smits EA, Garifullina GF, Abdel-Ghany S, Kato S, Mihara H, Hale KL, Burkhead JL, Esaki N, Kurihara T, Pilon M (2002) Characterization of a NifS-like chloroplast protein from Arabidopsis. Implications for its role in sulfur and selenium metabolism. Plant Physiol 130:1309–1318
CAS
PubMed
PubMed Central
Article
Google Scholar
Pohl M, Sprenger GA, Müller M (2004) A new perspective on thiamine catalysis. Curr Opin Biotechnol 15:335–342
CAS
PubMed
Article
PubMed Central
Google Scholar
Py B, Barras F (2010) Building Fe–S proteins: bacterial strategies. Nat Rev Microbiol 8:436–446
CAS
PubMed
Article
PubMed Central
Google Scholar
Raulfs EC, O'Carroll IP, Dos Santos PC, Unciuleac MC, Dean DR (2008) In vivo iron–sulfur cluster formation. Proc Natl Acad Sci USA 105:8591–8596
CAS
PubMed
Article
PubMed Central
Google Scholar
Rees DC (2002) Great metalloclusters in enzymology. Annu Rev Biochem 71:221–246
CAS
PubMed
Article
PubMed Central
Google Scholar
Reyda MR, Dippold R, Dotson ME, Jarrett JT (2008) Loss of iron–sulfur clusters from biotin synthase as a result of catalysis promotes unfolding and degradation. Arch Biochem Biophys 471:32–41
CAS
PubMed
Article
PubMed Central
Google Scholar
Reyda MR, Fugate CJ, Jarrett JT (2009) A complex between biotin synthase and the iron–sulfur cluster assembly chaperone HscA that enhances in vivo cluster assembly. Biochemistry 48:10782–10792
CAS
PubMed
PubMed Central
Article
Google Scholar
Rudolph MJ, Wuebbens MM, Rajagopalan KV, Schindelin H (2001) Crystal structure of molybdopterin synthase and its evolutionary relationship to ubiquitin activation. Nat Struct Biol 8:42–46
CAS
PubMed
Article
PubMed Central
Google Scholar
Ruiz M, Bettache A, Janicki A, Vinella D, Zhang CC, Latifi A (2010) The alr2505 (osiS) gene from Anabaena sp. strain PCC7120 encodes a cysteine desulfurase induced by oxidative stress. FEBS J 277:3715–3725
CAS
PubMed
Article
PubMed Central
Google Scholar
Schilke B, Voisine C, Beinert H, Craig E (1999) Evidence for a conserved system for iron metabolism in the mitochondria of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 96:10206–10211
CAS
PubMed
PubMed Central
Article
Google Scholar
Schwartz CJ, Djaman O, Imlay JA, Kiley PJ (2000) The cysteine desulfurase, IscS, has a major role in in vivo Fe–S cluster formation in Escherichia coli. Proc Natl Acad Sci USA 97:9009–9014
CAS
PubMed
Article
PubMed Central
Google Scholar
Schwartz CJ, Giel JL, Patschkowski T, Luther C, Ruzicka FJ, Beinert H, Kiley PJ (2001) IscR, an Fe–S cluster-containing transcription factor, represses expression of Escherichia coli genes encoding Fe–S cluster assembly proteins. Proc Natl Acad Sci USA 98:14895–14900
CAS
PubMed
Article
PubMed Central
Google Scholar
Schwarz G, Mendel RR (2006) Molybdenum cofactor biosynthesis and molybdenum enzymes. Annu Rev Plant Biol 57:623–647
CAS
PubMed
Article
PubMed Central
Google Scholar
Selbach B, Earles E, Dos Santos PC (2010) Kinetic analysis of the bisubstrate cysteine desulfurase SufS from Bacillus subtilis. Biochemistry 49:8794–8802
CAS
PubMed
Article
PubMed Central
Google Scholar
Shi R, Proteau A, Villarroya M, Moukadiri I, Zhang L, Trempe JF, Matte A, Armengod ME, Cygler M (2010) Structural basis for Fe–S cluster assembly and tRNA thiolation mediated by IscS protein–protein interactions. PLoS Biol 8:e1000354
PubMed
PubMed Central
Article
CAS
Google Scholar
Shimomura Y, Takahashi Y, Kakuta Y, Fukuyama K (2005) Crystal structure of Escherichia coli YfhJ protein, a member of the ISC machinery involved in assembly of iron–sulfur clusters. Proteins 60:566–569
CAS
PubMed
Article
PubMed Central
Google Scholar
Silberg JJ, Tapley TL, Hoff KG, Vickery LE (2004) Regulation of the HscA ATPase reaction cycle by the co-chaperone HscB and the iron–sulfur cluster assembly protein IscU. J Biol Chem 279:53924–53931
CAS
PubMed
Article
PubMed Central
Google Scholar
Smith AD, Agar JN, Johnson KA, Frazzon J, Amster IJ, Dean DR, Johnson MK (2001) Sulfur transfer from IscS to IscU: the first step in iron–sulfur cluster biosynthesis. J Am Chem Soc 123:11103–11104
CAS
PubMed
Article
PubMed Central
Google Scholar
Smith AD, Frazzon J, Dean DR, Johnson MK (2005a) Role of conserved cysteines in mediating sulfur transfer from IscS to IscU. FEBS Lett 579:5236–5240
CAS
PubMed
PubMed Central
Article
Google Scholar
Smith AD, Jameson GN, Dos Santos PC, Agar JN, Naik S, Krebs C, Frazzon J, Dean DR, Huynh BH, Johnson MK (2005b) NifS-mediated assembly of [4Fe–4S] clusters in the N- and C-terminal domains of the NifU scaffold protein. Biochemistry 44:12955–12969
CAS
PubMed
Article
PubMed Central
Google Scholar
Sullivan MA, Cannon JF, Webb FH, Bock RM (1985) Antisuppressor mutation in Escherichia coli defective in biosynthesis of 5-methylaminomethyl-2-thiouridine. J Bacteriol 161:368–376
CAS
PubMed
PubMed Central
Article
Google Scholar
Sun D, Setlow P (1993) Cloning, nucleotide sequence, and regulation of the Bacillus subtilis nadB gene and a nifS-like gene, both of which are essential for NAD biosynthesis. J Bacteriol 175:1423–1432
CAS
PubMed
PubMed Central
Article
Google Scholar
Takahashi Y, Nakamura M (1999) Functional assignment of the ORF2-iscS-iscU-iscA-hscB-hscA-fdx-ORF3 gene cluster involved in the assembly of Fe-S clusters in Escherichia coli. J Biochem 126:917–926
CAS
PubMed
Article
PubMed Central
Google Scholar
Takahashi Y, Tokumoto U (2002) A third bacterial system for the assembly of iron–sulfur clusters with homologs in archaea and plastids. J Biol Chem 277:28380–28383
CAS
PubMed
Article
PubMed Central
Google Scholar
Tan G, Lu J, Bitoun JP, Huang H, Ding H (2009) IscA/SufA paralogues are required for the [4Fe–4S] cluster assembly in enzymes of multiple physiological pathways in Escherichia coli under aerobic growth conditions. Biochem J 420:463–472
CAS
PubMed
PubMed Central
Article
Google Scholar
Tapley TL, Vickery LE (2004) Preferential substrate binding orientation by the molecular chaperone HscA. J Biol Chem 279:28435–28442
CAS
PubMed
Article
PubMed Central
Google Scholar
Taylor SV, Kelleher NL, Kinsland C, Chiu HJ, Costello CA, Backstrom AD, McLafferty FW, Begley TP (1998) Thiamin biosynthesis in Escherichia coli. Identification of ThiS thiocarboxylate as the immediate sulfur donor in the thiazole formation. J Biol Chem 273:16555–16560
CAS
PubMed
Article
PubMed Central
Google Scholar
Thomas G, Favre A (1975) 4-Thiouridine as the target for near-ultraviolet light induced growth delay in Escherichia coli. Biochem Biophys Res Commun 66:1454–1461
CAS
PubMed
Article
PubMed Central
Google Scholar
Tirupati B, Vey JL, Drennan CL, Bollinger JM Jr (2004) Kinetic and structural characterization of Slr0077/SufS, the essential cysteine desulfurase from Synechocystis sp. PCC 6803. Biochemistry 43:12210–12219
CAS
PubMed
Article
PubMed Central
Google Scholar
Tokumoto U, Takahashi Y (2001) Genetic analysis of the isc operon in Escherichia coli involved in the biogenesis of cellular iron–sulfur proteins. J Biochem 130:63–71
CAS
PubMed
Article
PubMed Central
Google Scholar
Tokumoto U, Kitamura S, Fukuyama K, Takahashi Y (2004) Interchangeability and distinct properties of bacterial Fe–S cluster assembly systems: functional replacement of the isc and suf operons in Escherichia coli with the nifSU-like operon from Helicobacter pylori. J Biochem 136:199–209
CAS
PubMed
Article
PubMed Central
Google Scholar
Trotter V, Vinella D, Loiseau L, Ollagnier de Choudens S, Fontecave M, Barras F (2009) The CsdA cysteine desulphurase promotes Fe/S biogenesis by recruiting Suf components and participates to a new sulphur transfer pathway by recruiting CsdL (ex-YgdL), a ubiquitin-modifying-like protein. Mol Microbiol 74:1527–1542
CAS
PubMed
Article
PubMed Central
Google Scholar
Unciuleac MC, Chandramouli K, Naik S, Mayer S, Huynh BH, Johnson MK, Dean DR (2007) In vitro activation of apo-aconitase using a [4Fe–4S] cluster-loaded form of the IscU [Fe–S] cluster scaffolding protein. Biochemistry 46:6812–6821
CAS
PubMed
Article
PubMed Central
Google Scholar
Urbina HD, Silberg JJ, Hoff KG, Vickery LE (2001) Transfer of sulfur from IscS to IscU during Fe/S cluster assembly. J Biol Chem 276:44521–44526
CAS
PubMed
Article
PubMed Central
Google Scholar
Urbonavicius J, Qian Q, Durand JM, Hagervall TG, Björk GR (2001) Improvement of reading frame maintenance is a common function for several tRNA modifications. EMBO J 20:4863–4873
CAS
PubMed
PubMed Central
Article
Google Scholar
Van Hoewyk D, Abdel-Ghany SE, Cohu CM, Herbert SK, Kugrens P, Pilon M, Pilon-Smits EA (2007) Chloroplast iron-sulfur cluster protein maturation requires the essential cysteine desulfurase CpNifS. Proc Natl Acad Sci U S A 104:5686–5691
CAS
PubMed
PubMed Central
Article
Google Scholar
Vickery LE, Cupp-Vickery JR (2007) Molecular chaperones HscA/Ssq1 and HscB/Jac1 and their roles in iron–sulfur protein maturation. Crit Rev Biochem Mol Biol 42:95–111
CAS
PubMed
Article
PubMed Central
Google Scholar
Vinella D, Brochier-Armanet C, Loiseau L, Talla E, Barras F (2009) Iron–sulfur (Fe/S) protein biogenesis: phylogenomic and genetic studies of A-type carriers. PLoS Genet 5:e1000497
PubMed
PubMed Central
Article
CAS
Google Scholar
Wang W, Huang H, Tan G, Si F, Liu M, Landry AP, Lu J, Ding H (2010) In vivo evidence for the iron-binding activity of an iron–sulfur cluster assembly protein IscA in Escherichia coli. Biochem J 432:429–436
CAS
PubMed
PubMed Central
Article
Google Scholar
Waterman DG, Ortiz-Lombardia M, Fogg MJ, Koonin EV, Antson AA (2006) Crystal structure of Bacillus anthracis ThiI, a tRNA-modifying enzyme containing the predicted RNA-binding THUMP domain. J Mol Biol 356:97–110
CAS
PubMed
Article
PubMed Central
Google Scholar
Webb E, Claas K, Downs DM (1997) Characterization of thiI, a new gene involved in thiazole biosynthesis in Salmonella typhimurium. J Bacteriol 179:4399–4402
CAS
PubMed
PubMed Central
Article
Google Scholar
Wollers S, Layer G, Garcia-Serres R, Signor L, Clemancey M, Latour JM, Fontecave M, Ollagnier de Choudens S (2010) Iron–sulfur (Fe–S) cluster assembly: the SufBCD complex is a new type of Fe–S scaffold with a flavin redox cofactor. J Biol Chem 285:23331–23341
CAS
PubMed
PubMed Central
Article
Google Scholar
Wuebbens MM, Rajagopalan KV (2003) Mechanistic and mutational studies of Escherichia coli molybdopterin synthase clarify the final step of molybdopterin biosynthesis. J Biol Chem 278:14523–14532
CAS
PubMed
Article
PubMed Central
Google Scholar
Xi J, Ge Y, Kinsland C, McLafferty FW, Begley TP (2001) Biosynthesis of the thiazole moiety of thiamin in Escherichia coli: identification of an acyldisulfide-linked protein-protein conjugate that is functionally analogous to the ubiquitin/E1 complex. Proc Natl Acad Sci USA 98:8513–8518
CAS
PubMed
Article
PubMed Central
Google Scholar
Yang J, Bitoun JP, Ding H (2006) Interplay of IscA and IscU in biogenesis of iron–sulfur clusters. J Biol Chem 281:27956–27963
CAS
PubMed
Article
PubMed Central
Google Scholar
Yeo WS, Lee JH, Lee KC, Roe JH (2006) IscR acts as an activator in response to oxidative stress for the suf operon encoding Fe–S assembly proteins. Mol Microbiol 61:206–218
CAS
PubMed
Article
PubMed Central
Google Scholar
Zafrilla B, Martínez-Espinosa RM, Esclapez J, Pérez-Pomares F, Bonete MJ (2010) SufS protein from Haloferax volcanii involved in Fe–S cluster assembly in haloarchaea. Biochim Biophys Acta 1804:1476–1482
CAS
PubMed
Article
PubMed Central
Google Scholar
Zhang W, Urban A, Mihara H, Leimkühler S, Kurihara T, Esaki N (2010) IscS functions as a primary sulfur-donating enzyme by interacting specifically with MoeB and MoaD in the biosynthesis of molybdopterin in Escherichia coli. J Biol Chem 285:2302–2308
CAS
PubMed
Article
PubMed Central
Google Scholar
Zheng L, White RH, Cash VL, Jack RF, Dean DR (1993) Cysteine desulfurase activity indicates a role for NIFS in metallocluster biosynthesis. Proc Natl Acad Sci USA 90:2754–2758
CAS
Article
Google Scholar
Zheng L, White RH, Cash VL, Dean DR (1994) Mechanism for the desulfurization of L-cysteine catalyzed by the nifS gene product. Biochemistry 33:4714–4720
CAS
PubMed
Article
PubMed Central
Google Scholar
Zheng L, Cash VL, Flint DH, Dean DR (1998) Assembly of iron–sulfur clusters. Identification of an iscSUA-hscBA-fdx gene cluster from Azotobacter vinelandii. J Biol Chem 273:13264–13272
CAS
PubMed
Article
PubMed Central
Google Scholar