Skip to main content
Log in

Conditioning action of the environment on the protein dynamics studied through elastic neutron scattering

  • Article
  • Published:
European Biophysics Journal Aims and scope Submit manuscript

Abstract

The dynamics of lysozyme in the picosecond timescale has been studied when it is in dry and hydrated powder form and when it is embedded in glycerol, glycerol–water, glucose and glucose–water matrices. The investigation has been undertaken through elastic neutron scattering technique on the backscattering spectrometer IN13. The dynamics of dry powder and embedded-in-glucose lysozyme can be considered purely vibrational up to 100 K, where the onset of an anharmonic contribution takes place. This contribution can be attributed to the activation of methyl group reorientations and is described with an Arrhenius trend. An additional source of anharmonic dynamics appears at higher temperatures for lysozyme in hydrated powders and embedded in glycerol, glycerol–water and glucose–water matrices. This second process, also represented with an Arrhenius trend, corresponds to the so-called protein dynamical transition. Both the temperature where such a transition takes place and the magnitude of the protein mean square displacements depend on the environment. The dynamical response of the protein to temperature is put in relationship with its thermal stability.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  • Allison SD, Chang B, Randolph TW, Carpenter JF (1999) Hydrogen bonding between sugar and protein is responsible for inhibition of dehydration-induced protein unfolding. Arch Biochem Biophys 365:289–298

    Article  Google Scholar 

  • Austin RH, Beeson KW, Eisenstein L, Frauenfelder H, Gunsalus I C (1975) Dynamics of ligand binding to myoglobin. Biochemistry 14:5355–5373

    Article  Google Scholar 

  • Bée M (1988) Quasielastic neutron scattering. Adam Hilger (ed), Bristol and Philadelphia

  • Bell LN, Hageman MJ, Muraoka LM (1995) Thermally induced denaturation of lyophilized bovine somatotropin and lysozyme as impacted by moisture and excipients. J Pharm Sci 84:707–712

    Article  Google Scholar 

  • Brumfiel G (2004) Just add water. Nature 428:14–15

    Article  ADS  Google Scholar 

  • Buitink J, Leprince O (2004) Glass formation in plant anhydrobiotes: survival in the dry state. Cryobiology 48:215–228

    Article  Google Scholar 

  • Burke M J (1986) The glassy state and survival of anhydrous biological systems. In: Leopold AC (ed) Membranes, metabolism and dry organisms. Cornell University Press, Ithaca pp 358–363

    Google Scholar 

  • Caliskan G, Kisliuk A, Tsai AM, Soles CL, Sokolov AP (2002) Influence of solvent on dynamics and stability of a protein. J Non-Cryst Solids 307–310:887–893

    Google Scholar 

  • Caliskan G, Mechtani D, Roh JH, Kisliuk A, Sokolov AP, Azzam S, Cicerone MT, Lin-Gibson S, Peral I (2004) Protein and solvent dynamics: how strongly are they coupled? J Chem Phys 121:1978–1983

    Article  ADS  Google Scholar 

  • Carpenter JF, Crowe JH (1988) The mechanism of cryoprotection of proteins by solutes. Cryobiology 25:244–255

    Article  Google Scholar 

  • Carpenter JF, Chang BS, Garzon-Rodriguez W, Randolph TW (2002) Rational design of stable lyophilized protein formulations: theory and practice. Pharm Biotechnol 13:109–133

    Google Scholar 

  • Cordone L, Ferrand M, Vitrano E, Zaccai G (1999) Harmonic behavior of trehalose-coated carbon-monoxy-myolobin at high temperature. Biophys J 76:1043–1047

    Google Scholar 

  • Cornicchi E, Onori G, Paciaroni A (2005) Picosecond-time-scale fluctuations of proteins in glassy matrices: the role of viscosity. Phys Rev Lett 95:158104(1)–158104(4)

    Article  ADS  Google Scholar 

  • Crowe LM, Reid DS, Crowe JH (1996) Is trehalose special for preserving dry biomaterials? Biophys J 71:2087–2093

    Google Scholar 

  • Crowe JH, Carpenter JF, Crowe LM (1998) The role of vitrification in anhydrobiosis. Annu Rev Physiol 60:73–103

    Article  Google Scholar 

  • Daniel RM, Finney JL, Reat V, Dunn R, Ferrand M, Smith JC (1999). Enzyme dynamics and activity: time-scale dependence of dynamical transitions in glutamate dehydrogenase solution. Biophys J 77:2184–2190

    Google Scholar 

  • De Francesco A, Marconi M, Cinelli S, Onori G, Paciaroni A (2004) Picosecond internal dynamics of lysozyme as affected by thermal unfolding in nonaqueous environment. Biophys J 86:480–487

    Google Scholar 

  • Doster W, Cusack S, Petry W (1989) Dynamical transition of myoglobin revealed by inelastic neutron scattering. Nature 337:754–756

    Article  ADS  Google Scholar 

  • Fenimore PW, Frauenfelder H, McMahon BH, Parak FG (2002) Slaving: Solvent fluctuations dominate protein dynamics and functions. Proc Natl Acad Sci USA 99:16047–16051

    Article  ADS  Google Scholar 

  • Fenimore PW, Frauenfelder H, McMahon BH, Young RD (2004) Bulk-solvent and hydration-shell fluctuations, similar to α- and β-fluctuations in glasses, control protein motions and functions. Proc Natl Acad Sci USA 101:14408–14413

    Article  ADS  Google Scholar 

  • Ferrand M, Dianoux AJ, Petry W, Zaccai G (1993) Thermal motions and function of bacteriorhodopsin in purple membranes: effects of temperature and hydration studied by neutron scattering. Proc Natl Acad Sci USA 90:9668–9672

    Article  ADS  Google Scholar 

  • Frauenfelder H, Sligar SG, Wolynes PG (1991) The energy landscapes and motions of proteins. Science 254:1598–1603

    Article  ADS  Google Scholar 

  • Gabel F (2005) Protein dynamics in solution and powder measured by incoherent elastic neutron scattering: the influence of Q-range and energy resolution. Eur Biophys J 34:1–12

    Article  Google Scholar 

  • Gottfried DS, Peterson ES, Sheikh AG, Wang J, Yang M, Friedman CA (1996) Evidence for damped hemoglobin dynamics in a room temperature trehalose glass. J Phys Chem 100:12034–12042

    Article  Google Scholar 

  • Green JL, Angell CA (1989) Phase relations and vitrification in saccharide–water solutions and the trehalose anomaly. J Phys Chem 93:2880–2882

    Article  Google Scholar 

  • Gregory RB (1995) Protein-solvent interactions. Marcel Dekker, New York

    Google Scholar 

  • Gregory RB, Lumry R (1985) Hydrogen exchange evidence for distinct structural classesin globular proteins. Biopolymers 24:301–326

    Article  Google Scholar 

  • Hagen SJ, Hofrichter J, Eaton WA (1995) Protein reaction kinetics in a room temperature glass. Science 269:959–962

    Article  ADS  Google Scholar 

  • Hayward JA, Smith JC (2002) Temperature dependence of protein dynamics: computer simulation analysis of neutron scattering properties. Biophys J 82:1216–1225

    Article  Google Scholar 

  • Hill JJ, Shalaev EY, Zografi G (2005) Thermodynamic and dynamic factors involved in the stability of native protein structure in amorphous solids in relation to levels of hydration. J Pharm Sci 94:1636–1667

    Article  Google Scholar 

  • Kleinert T, Doster W, Leyser H, Petry W, Schwarz V, Settles M (1998) Solvent composition and viscosity effects on the kinetics of CO-binding to horse myoglobin. Biochemistry 37:717–733

    Article  Google Scholar 

  • Klibanov AM (2001) Improving enzymes by using them in organic solvents. Nature 409:241–246

    Article  ADS  Google Scholar 

  • Lamy L, Portmann MO, Mathlouthi M, Larreta-Garde V (1990) Modulation of egg-white lysozyme activity by viscosity intensifier additives. Biophys Chem 36:71–76

    Article  Google Scholar 

  • Lee G (2002) Spray-drying of proteins. Pharm Biotechnol 13:135–158

    Google Scholar 

  • Lee AL, Wand AJ (2001) Microscopic origins of entropy, heat capacity and the glass transition in proteins. Nature 411:501–504

    Article  ADS  Google Scholar 

  • Liao YH, Brown MB, Quader A, Martin GP (2002) Protective mechanism of stabilizing excipients against dehydration in the freeze-drying of proteins. Pharm Res 19(12):1854–1861

    Article  Google Scholar 

  • Magazù S, Maisano G, Migliardo F, Mondelli C (2004) Mean-Square displacement relationship in bioprotectant systems by elastic neutron scattering. Biophys J 86:3241–3249

    Google Scholar 

  • Paciaroni A, Cinelli S, Onori G (2002) Effect of the environment on the protein dynamical transition: a neutron scattering study. Biophys J 83:1157–1164

    Google Scholar 

  • Paciaroni A, Orecchini A, Cinelli S, Onori G, Lechner RE, Pieper J (2003) Protein dynamics on the picosecond timescale as affected by the environment: a quasielastic neutron scattering study. Chem Phys 292:397–404

    Article  Google Scholar 

  • Paciaroni A, Cinelli S, Cornicchi E, De Francesco A, Onori G (2005) Fast fluctuations in protein powders: The role of hydration. Chem Phys Lett 410:400–403

    Article  ADS  Google Scholar 

  • Parak F, Frauenfelder H (1993) Protein dynamics. Physica A 201:332–345

    Article  ADS  Google Scholar 

  • Parak F, Frolov EN, Mossbauer RL, Goldanskii VI (1981) Dynamics of metmyoglobin crystals investigated by nuclear gamma resonance absorption. J Mol Biol 145:825–833

    Article  Google Scholar 

  • Pérez J, Zanotti J-M, Durand D (1999) Evolution of the internal dynamics of two globular proteins from dry powder to solution. Biophys J 77:454–469

    Article  Google Scholar 

  • Rariy RV, Klibanov AM (1997) Correct protein folding in glycerol. Proc Natl Acad Sci USA 94:13520–13523

    Article  ADS  Google Scholar 

  • Rasmussen DH, MacKenzie AP (1971) The glass transition in amorphous water. Application of the measurement to problems arising in cryobiology. J Phys Chem 75:967–973

    Article  Google Scholar 

  • Rasmussen BF, Stock AM, Ringe D, Petsko GA (1992) Crystalline ribonuclease A loses function below the dynamical transition at 220 K. Nature 357:423–424

    Article  ADS  Google Scholar 

  • Reat V, Dunn R, Ferrand M, Finney JL, Daniel RM, Smith JC (2000) Solvent dependence of dynamic transitions in protein solutions. Proc Natl Acad Sci USA 97:9961–9966

    Article  ADS  Google Scholar 

  • Ringe D, Petsko GA (1985) Mapping protein dynamics by X-ray diffraction. Prog Biophys Mol Biol 45:197–235

    Article  Google Scholar 

  • Roh JH, Novikov VN, Gregory RB, Curtis JE, Chowdhuri Z, Sokolv AP (2005) Onsets of anharmonicity in protein dynamics. Phys Rev Lett 95:038101(1)–038101(4)

    Article  ADS  Google Scholar 

  • Smith JC (1991) Protein dynamics: comparison of simulations with inelastic neutron scattering experiments. Q Rev Biophys 24:1–65

    Article  ADS  Google Scholar 

  • Tang KES, Dill K (1998) Native protein fluctuations: the conformational-motion temperature and the inverse correlation of protein flexibility with protein stability. J Biomol Struct Dyn 16:397–411

    Google Scholar 

  • Tehei M, Madern D, Pfister C, Zaccai G (2001) Fast dynamics of halophilic malate dehydrogenase and BSA measured by neutron scattering under various solvent conditions influencing protein stability. Proc Natl Acad Sci USA 98:14356–14361

    Article  ADS  Google Scholar 

  • Tsai AM, Neumann DA, Bell LN (2000) Molecular dynamics of solid-state lysozyme as affected by glycerol and water: a neutron scattering study. Biophys J 79:2728–2732

    Google Scholar 

  • Tsai AM, Udovic TJ, Neumann DA (2001) The inverse relationship between protein dynamics and thermal stability. Biophys J 81:2339–2343

    Google Scholar 

  • Vitkup D, Ringe D, Petsko GA, Karplus M (2000) Solvent mobility and the protein ‘glass’ transition. Nat Struct Biol 7:34–38

    Article  Google Scholar 

  • Wang W (2000) Lyophilization and development of solid protein pharmaceuticals. Int J Pharm 203:1–60

    Article  Google Scholar 

  • Weik M, Lehnert U, Zaccai G (2005) Liquid-like water confined in stacks of biological membranes at 200 K and its relation to protein dynamics. Biophys J 89:3639–3646

    Article  Google Scholar 

  • Williams DLJ, Rapanovich I, Russell AJ (1995) Proteins in essentially nonaqueous environments. In: Gregory RB (ed) Protein–solvent interactions, Marcel Dekker, New York

    Google Scholar 

  • Wolkers WF, Walker NJ, Tablin F, Crowe JH (2001) Human platelets loaded with trehalose survive freeze-drying. Cryobiology 42:79–87

    Article  Google Scholar 

  • Zaccai G (2000) How soft is a protein? a protein dynamics force constant measured by neutron scattering. Science 288:1604–1607

    Article  ADS  Google Scholar 

Download references

Acknowledgements

The authors are grateful to ILL (Institut Laue-Langevin, Grenoble, France) and to the Italian-French CRG IN13 for providing beam time at the IN13 spectrometer.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to A. Paciaroni.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Paciaroni, A., Cornicchi, E., De Francesco, A. et al. Conditioning action of the environment on the protein dynamics studied through elastic neutron scattering. Eur Biophys J 35, 591–599 (2006). https://doi.org/10.1007/s00249-006-0073-7

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00249-006-0073-7

Keywords

Navigation