Skip to main content

Advertisement

Log in

Soil Microbial Diversity Affects the Plant-Root Colonization by Arbuscular Mycorrhizal Fungi

  • Note
  • Published:
Microbial Ecology Aims and scope Submit manuscript

Abstract

Terrestrial plants establish symbiosis with arbuscular mycorrhizal fungi (AMF) to exchange water and nutrients. However, the extent to which soil biodiversity influences such association remains still unclear. Here, we manipulated the soil microbial diversity using a “dilution-to-extinction” approach in a controlled pot microcosm system and quantified the root length colonization of maize plants by the AMF Rhizophagus clarus. The experiment was performed by manipulating the soil microbiome within a native and foreign soil having distinct physicochemical properties. Overall, our data revealed significant positive correlations between the soil microbial diversity and AMF colonization. Most importantly, this finding opposes the diversity-invasibility hypothesis and highlights for a potential overall helper effect of the soil biodiversity on plant-AMF symbiosis.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2

Data Availability

All sequence data and metadata were deposited in the Sequence Read Archive (SRA; http://www.ncbi.nlm.nih.gov/Traces/sra/) under the BioProject PRJNA599204: “Soil microbial diversity affects the plant-root colonization by arbuscular mycorrhizal fungi” (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA599204).

References

  1. Smith SE, Read DJ (2008) Mycorrhizal symbiosis. Academic Press, London

    Google Scholar 

  2. Newsham KK, Fitter AH, Watkinson AR (1995) Multi-functionality and biodiversity in arbuscular mycorrhizas. Trends Ecol Evol 10:407–411. https://doi.org/10.1016/S0169-5347(00)89157-0

    Article  CAS  PubMed  Google Scholar 

  3. Borowicz VA (2001) Do arbuscular mycorrhizal fungi alter plant-pathogen relations? Ecology 82:3057–3068. https://doi.org/10.1890/0012-9658(2001)082[3057:DAMFAP]2.0.CO;2

    Article  Google Scholar 

  4. Mallon CA, Le Roux X, van Doorn GS, Dini-Andreote F, Poly F, Salles JF (2018) The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche. ISME J 12:728–741. https://doi.org/10.1038/s41396-017-0003-y

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Pylro VS, Roesch LF, Morais DK, Clark IM, Hirsch PR, Tótola MR (2014) Data analysis for 16S microbial profiling from different benchtop sequencing platforms. J Microbiol Methods 107:30–37. https://doi.org/10.1016/j.mimet.2014.08.018

    Article  CAS  PubMed  Google Scholar 

  6. Pylro VS, Morais DK, de Oliveira FS, Dos Santos FG, Lemos LN, Oliveira G, Roesch LF (2016) BMPOS: a flexible and user-friendly tool sets for microbiome studies. Microb Ecol 72:443–447. https://doi.org/10.1007/s00248-016-0785-x

    Article  PubMed  Google Scholar 

  7. Phillips JM, Hayman DS (1970) Improved procedure for clearing roots and staining parasitic and vesicular–arbuscular mycorrhizal fungi for rapid assessment of infection. Trans Br Mycol Soc 55:158–161. https://doi.org/10.1016/S0007-1536(70)80110-3

    Article  Google Scholar 

  8. Vierheilig H, Coughlan AP, Wyss U, Piché Y (1998) Ink and vinegar, a simple staining technique for arbuscular-mycorrhizal fungi. Appl Environ Microbiol 64:5004–5007

    Article  CAS  Google Scholar 

  9. Giovannetti M, Mosse B (1980) An evaluation of techniques for measuring vesicular arbuscular mycorrhizal infection in roots. New Phytol 84:489–500. https://doi.org/10.1111/j.1469-8137.1980.tb04556.x

    Article  Google Scholar 

  10. Lozupone C, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71:8228–8235. https://doi.org/10.1128/AEM.71.12.8228-8235.2005

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Elton CS (1958) The ecology of invasions by animals and plants. Methuen, London. https://doi.org/10.1007/978-1-4899-7214-9

    Book  Google Scholar 

  12. Van Elsas JD, Chiurazzi M, Mallon CA, Elhottovā D, Krištůfek V, Salles JF (2012) Microbial diversity determines the invasion of soil by a bacterial pathogen. Proc Natl Acad Sci U S A 109:1159–1164. https://doi.org/10.1073/pnas.1109326109

    Article  PubMed  PubMed Central  Google Scholar 

  13. Van der Heijden MGA, de Bruin S, Luckerhoff L, van Logtestijn RSP, Schlaeppi K (2016) A widespread plant-fungal-bacterial symbiosis promotes plant biodiversity, plant nutrition and seedling recruitment. ISME J 10:389–399. https://doi.org/10.1038/ismej.2015.120

    Article  CAS  PubMed  Google Scholar 

  14. Frey-Klett P, Garbaye J, Tarkka M (2007) The mycorrhiza helper bacteria revisited. New Phytol 176:22–36. https://doi.org/10.1111/j.1469-8137.2007.02191.x

    Article  CAS  PubMed  Google Scholar 

  15. Offre P, Pivato B, Siblot S, Gamalero E, Corberand T, Lemanceau P, Mougel C (2007) Identification of bacterial groups preferentially associated with mycorrhizal roots of Medicago truncatula. Appl Environ Microbiol 73:913–921. https://doi.org/10.1128/AEM.02042-06

    Article  CAS  PubMed  Google Scholar 

  16. Offre P, Pivato B, Mazurier S, Siblot S, Berta G, Lemanceau P, Mougel C (2008) Microdiversity of Burkholderiales associated with mycorrhizal and nonmycorrhizal roots of Medicago truncatula. FEMS Microbiol Ecol 65:180–192. https://doi.org/10.1111/j.1574-6941.2008.00504.x

    Article  CAS  PubMed  Google Scholar 

  17. Pivato B, Offre P, Marchelli S, Barbonaglia B, Mougel C, Lemanceau P, Berta G (2009) Bacterial effects on arbuscular mycorrhizal fungi and mycorrhiza development as influenced by the bacteria, fungi, and host plant. Mycorrhiza 19:81–90. https://doi.org/10.1007/s00572-008-0205-2

    Article  PubMed  Google Scholar 

  18. Toljander JF, Artursson V, Paul LR, Jansson JK, Finlay RD (2006) Attachment of different soil bacteria to arbuscular mycorrhizal fungal extraradical hyphae is determined by hyphal vitality and fungal species. FEMS Microbiol Lett 254:34–40. https://doi.org/10.1111/j.1574-6968.2005.00003.x

    Article  CAS  PubMed  Google Scholar 

  19. Scheublin TR, Sanders IR, Keel C, van der Meer JR (2010) Characterisation of microbial communities colonising the hyphal surfaces of arbuscular mycorrhizal fungi. ISME J 4:752–763. https://doi.org/10.1038/ismej.2010.5

    Article  PubMed  Google Scholar 

  20. Cheeke TE, Zheng C, Koziol L, Gurholt CR, Bever JD (2019) Sensitivity to AMF species is greater in late-successional than early-successional native or nonnative grassland plants. Ecology 100:e02855. https://doi.org/10.1002/ecy.2855

    Article  PubMed  Google Scholar 

  21. Tilman D, Knops J, Wedin D, Reich P, Ritchie M, Siemann E (1997) The influence of functional diversity and composition on ecosystem processes. Science 277:1300–1302. https://doi.org/10.1126/science.277.5330.1300

    Article  CAS  Google Scholar 

Download references

Funding

This work was financially supported by FAPESP (proc. 2010/16635-7 and 2011/03487-3) and CAPES (Finance Code 001). We also thank FAPESP for providing financial support to D.A.F. (2013/04388-3).

Author information

Authors and Affiliations

Authors

Contributions

DAF, JFS, and FDA developed the experimental design; DAF and TFS performed the experiment and data collection; VSP and FD-A analyzed the data; FD-A wrote the manuscript with contributions from all authors.

Corresponding author

Correspondence to Francisco Dini-Andreote.

Ethics declarations

Conflict of Interest

The authors declare that they have no conflict of interest.

Electronic supplementary material

ESM 1

(DOCX 34 kb).

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Ferreira, D.A., da Silva, T.F., Pylro, V.S. et al. Soil Microbial Diversity Affects the Plant-Root Colonization by Arbuscular Mycorrhizal Fungi. Microb Ecol 82, 100–103 (2021). https://doi.org/10.1007/s00248-020-01502-z

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00248-020-01502-z

Keywords

Navigation