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Identification and Analysis of OVATE Family Members from Genome of the Early Land Plants Provide Insights into Evolutionary History of OFP Family and Function

  • Meenakshi Dangwal
  • Sandip Das
Original Article

Abstract

Mosses, liverworts, hornworts and lycophytes represent transition stages between the aquatic to terrestrial/land plants. Several morphological and adaptive novelties driven by genomic components including emergence and expansion of new or existing gene families have played a critical role during and after the transition, and contributed towards successful colonization of terrestrial ecosystems. It is crucial to decipher the evolutionary transitions and natural selection on the gene structure and function to understand the emergence of phenotypic and adaptive diversity. Plants at the “transition zone”, between aquatic and terrestrial ecosystem, are also the most vulnerable because of climate change and may contain clues for successful mitigation of the challenges of climate change. Identification and comparative analyses of such genetic elements and gene families are few in mosses, liverworts, hornworts and lycophytes. Ovate family proteins (OFPs) are plant-specific transcriptional repressors and are acknowledged for their roles in important growth and developmental processes in land plants, and information about the functional aspects of OFPs in early land plants is fragmentary. As a first step towards addressing this gap, a comprehensive in silico analysis was carried out utilizing publicly available genome sequences of Marchantia polymorpha (Mp), Physcomitrella patens (Pp), Selaginella moellendorffii (Sm) and Sphagnum fallax (Sf). Our analysis led to the identification of 4 MpOFPs, 19 PpOFPs, 6 SmOFPs and 3 SfOFPs. Cross-genera analysis revealed a drastic change in the structure and physiochemical properties in OFPs suggesting functional diversification and genomic plasticity during the evolutionary course. Knowledge gained from this comparative analysis will form the framework towards deciphering and dissection of their developmental and adaptive role/s in early land plants and could provide insights into evolutionary strategies adapted by land plants.

Keywords

OVATE family proteins Marchantia Sphagnum Physcomitrella Selaginella 

Notes

Acknowledgements

The research has been supported and sponsored by the UGC under the UGC Dr. D.S. Kothari Post-Doctoral Fellowship Scheme to MD (Award Letter No.F.4-2/2006 (BSR)/BL/16-17/0032).

Author Contributions

MD compiled the data and performed analysis. MD and SD drafted the Manuscript.

Compliance with Ethical Standards

Conflict of interest

The authors declare no conflict of interest.

Supplementary material

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Supplementary material 1 (XLSX 19 KB)
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Supplementary material 2 (PDF 164 KB)
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Supplementary material 3 (PDF 1278 KB)
239_2018_9863_MOESM4_ESM.pdf (251 kb)
Supplementary material 4 (PDF 250 KB)

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Authors and Affiliations

  1. 1.Department of BotanyUniversity of DelhiDelhiIndia

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