Abstract
The iterative Krylov solver MINRES for linear equation systems has been implemented into auxiliary density perturbation theory. To this end, the MINRES solver was incorporated into the Eirola-Nevanlinna algorithm for large nonsymmetric matrices. As a result, the formal scaling of ADPT is reduced from \({\mathcal {O}}\)(\(N_{\rm {aux}}^4\)) to \({\mathcal {O}}\)(\(N_{\rm {aux}}^3\)), being \(N_{\rm {aux}}\) the number of auxiliary functions. Moreover, with MINRES this scaling can be further reduced by the use of the double asymptotic expansion of the two-center electron repulsion integrals. This state-of-the-art solver allows first-principles quantum-mechanical calculations of response properties for large systems with thousands of atoms at the nanometric scale. Comparison between the analytic and iterative solutions show excellent agreement for static and dynamical polarizabilities. To demonstrate the robustness of this newly implemented methodology, static polarizabilities of microbiologically relevant systems with more than 100,000 auxiliary functions and 28,000 basis functions are presented in this work.
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Fournier R (1990) J Chem Phys 92(9):5422
Komornicki A, Fitzgerald G (1993) J Chem Phys 98(2):1398
Colwell SM, Murray CW, Handy NC, Amos RD (1993) Chem Phys Lett 210(1):261
Lee AM, Colwell SM (1994) J Chem Phys 101(11):9704
Ochsenfeld C, Head-Gordon M (1997) Chem Phys Lett 270(5):399
Weber V, Niklasson AMN, Challacombe M (2004) Phys Rev Lett 92:1932002
Weber V, Niklasson AMN, Challacombe M (2005) J Chem Phys 123(4):044106
Niklasson AMN, Weber V (2007) J Chem Phys 127(6):064105
Kussmann J, Ochsenfeld C (2007) J Chem Phys 127(20):204103
Coriani S, Host S, Jansik B, Thogersen L, Olsen J, Jorgensen P, Reine S, Pawlowski F, Helgaker T, Salek P (2007) J Chem Phys 126(15):154108
Kobayashi M, Touma T, Nakai H (2012) J Chem Phys 136(8):084108
Dovesi R, Kirtman B, Maschio L, Maul J, Pascale F, Rérat M (2019) J Phys Chem C 123(13):8336
Maschio L, Kirtman B (2020) J Chem Theory Comput 16(1):340
Schattenberg CJ, Reiter K, Weigend F, Kaupp M (2020) J Chem Theory Comput 16(2):931
McWeeny R (1992) Methods of molecular quantum mechanics. Academic Press, London
Mejía-Rodríguez D, Delgado Venegas RI, Calaminici P, Köster AM (2015) J Chem Theory Comput 11(4):1493
Pedroza-Montero JN, Delesma-Díaz FA, Delgado-Venegas RI, Calaminici P, Köster AM (2016) Theor Chem Acc 135:230
Flores-Moreno R, Melin J, Ortiz JV, Merino G (2008) J Chem Phys 129(22):224105
Flores-Moreno R (2010) J Chem Theory Comput 6(1):48
Delgado-Venegas RI, Mejía-Rodríguez D, Flores-Moreno R, Calaminici P, Köster AM (2016) J Chem Phys 145(22):224103
Zúniga-Gutiérrez B, Cota LG, Pedroza-Montero JN, Köster AM, to be submitted (XXXX)
Flores-Moreno R, Köster AM (2008) J Chem Phys 128(13):134105
Pedroza-Montero JN, Morales JL, Álvarez Ibarra A, Geudtner G, Calaminici P, Köster AM, (2020) J Chem Theory Comput 16, 2965
Eirola T, Nevanlinna O (1989) Linear Algebra Appl 121:511
Delesma-Díaz F, (2020) Range separated hybrid functionals in auxiliary density functional theory. Ph.D. Thesis, Cinvestav
Zúñiga-Gutiérrez B, Köster AM (2016) Mol Phys 114(7–8):1026
Köster AM, Geudtner G, Gamboa GU, Álvarez-Ibarra A, Calaminici P, Flores-Moreno R, Goursot A, de la Lande A, Mejía-Rodríguez D, Mineva T, Petterson LGM, Vázquez-Pérez, B. Zúñiga-Gutiérrez JM. (2020) The deMon2k Users Guide. http://www.demon-software.com/public_html/download/manual/manual.pdf. Accessed: 16-04-2020
Köster AM (2003) J Chem Phys 118(22):9943
Álvarez-Ibarra A, Köster AM (2013) J Chem Phys 139(2):024102
Mejía-Rodríguez D (2015) Low-order scaling methods for auxiliary density functional theory. Ph.D. Thesis, Cinvestav
Perdew J, Erzenhof M, Burke K (1996) J Chem Phys 105:9982
Guan J, Duffy P, Carter JT, Chong DP, Casida KC, Casida ME, Wrinn M (1993) J Chem Phys 98(6):4753
Chong DP (1992) J Chin Chem Soc 39(5):375
Calaminici P, Janetzko F, Köster AM, Mejía-Olvera R, Zuñiga-Gutierrez B (2007). J Chem Phys. https://doi.org/10.1063/1.2431643
Godbout N, Salahub DR, Andzelm J, Wimmer E (1992) Can J Phys 70(2):560
Perdew JP, Yue W (1986) Phys Rev B 33:8800
Rega N, Cossi M, Barone V (1996) J Chem Phys 105(24):11060
Vosko SH, Wilk L, Nusair M (1980) Can J Phys 58(8):1200
Carmona-Espíndola J (2012) Time-dependent auxiliary density perturbation theory: development, implementation and applications. Ph.D. Thesis, Cinvestav
Perkins AJ (1964) J Phys Chem 68(3):654
Bishop DM, Cheung LM (1982) J Phys Chem 11(1):119
Spackman MA (1989) J Phys Chem 93(22):7594
Alms GR, Burnham A, Flygare WH (1975) J Chem Phys 63(8):3321
Miller CK, Orr BJ, Ward JF (1981) J Chem Phys 74(9):4858
Bridge NJ, Buckingham AD, Linnett JW (1966) Proc R Soc London Series A 295(1442):334
Bogaard MP, Buckingham AD, Pierens RK, White AH (1978) J Chem Soc Faraday Trans 1(74):3008
Bogaard M, Buckingham A, Ritchie G (1982) Chem Phys Lett 90(3):183
Murphy WF (1977) J Chem Phys 67(12):5877
Bohne A, Lang E, von der Lieth CW (1998) Mol Mod Ann 4(1):33
Tuukkanen S, Toppari JJ, Kuzyk A, Hirviniemi L, Hytönen VP, Ihalainen T, Törmä P (2006) Nano Lett 6(7):1339
Tuukkanen S, Kuzyk A, Toppari JJ, Häkkinen H, Hytönen VP, Niskanen E, Rinkiö M, Törmä P (2007) Nanotechnology 18:295204
Mignon P, Loverix S, Steyaert J, Geerlings P (2005) Nucleic Acids Res 33(6):1779
Regtmeier J, Eichhorn R, Bogunovic L, Ros A, Anselmetti D (2010) Anal Chem 82(17):7141
Zhao H (2011) Phys Rev E 84:021910
Cuervo A, Dans PD, Carrascosa JL, Orozco M, Gomila G, Fumagalli L (2014) Proc Natl Acad Sci 111:E3624
Yang Y, Lao K, Wilkins D, Grisafi A, Ceriotti M, DiStassio R Jr (2019) Sci Data 6:152
Cao W, Chern M, Dennis AM, Brown KA (2019) Nano Lett 19(8):5762
Mishra S, Mondal AK, Pal S, Das TK, Smolinsky EZB, Siligardi G, Naaman R (2020) J Phys Chem C 124(19):10776
Indumathi K, Abiram A, Praveena G (2020) Mol Phys 118(1):e1584682
Cheng R, Martens J, Fridgen TD (2020) Phys Chem Chem Phys 22:11546
Jung G, Kasper S, Schmid F (2019) J Electrochem Soc 166(9):B3194
van der Touw F, Mandel M (1974) Biophys Chem 2(3):231
Washizu H, Kikuchi K (2006) J Phys Chem B 110(6):2855
Tomic S, Babi SD, Vuletic T, Krca S, Ivankovic D, Griparic L, Podgornik R (2007) Phys Rev E 75:021905
Acknowledgements
J.N.P.M. gratefully acknowledges CONACyT Ph.D. fellowship 245798. This work was performed and supported by the SENER-CONACyT program 280158. Financial support from the CONACyT projects 252658 and A1-S-11929 is acknowledged. For the program development and benchmark calculations computational resources from the CONACyT infrastructure project GIC 268251 and the SEP-Cinvestav project 65 were used.
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Pedroza-Montero, J.N., Calaminici, P. & Köster, A.M. First-principle polarizabilities of nanosystems from auxiliary density perturbation theory with MINRES. Theor Chem Acc 141, 7 (2022). https://doi.org/10.1007/s00214-021-02864-4
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DOI: https://doi.org/10.1007/s00214-021-02864-4