Abstract
We perform density functional theory calculations to investigate the adsorption properties of diphenylalanine on pristine graphene. We use PBE exchange–correlation functional with corrections for van der Waals interactions (PBE-D3) during the calculations. The formation of the diphenylalanine/graphene complexes is favourable energetically in all cases. The well-known pristine graphene’s semi-metallic nature is modified when the diphenylalanine molecule adsorbs. One can observe, through the analysis of the adsorption energy, that the strongest interaction is the one in which diphenylalanine adsorbs on graphene through offset aromatic interactions. The results obtained here can provide useful guidance in designing novel hybrid organic/inorganic materials for many biomedical applications.
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Geim AK, Novoselov KS (2007) The rise of graphene. Nat Mater 6:183
Katoch J, Kim S, Kuang Z, Farmer B, Naik R, Tatulian S, Ishigami M (2012) Structure of a peptide adsorbed on graphene and graphite. Nano Lett 12:2342
Novoselov KS, Geim AK, Morozov SV, Jiang D, Zhang Y, Dubonos SV, Grigorieva IV, Firsov AA (2004) Electric field effect in atomically thin carbon films. Science 306(5696):666
Cai M, Thorpe D, Adamson DH, Schniepp HC (2012) Methods of graphite exfoliation. J Mater Chem 22:24992
Seah CM, Chai SP, Mohamed A (2014) Mechanisms of graphene growth by chemical vapour deposition on transition metals. Carbon 70:1
Yu X, Hwang C, Jozwiak C, Köhl A, Schmid A, Lanzara A (2011) New synthesis method for the growth of epitaxial graphene. J Electron Spectrosc Relat Phenom 184:100
Li D, Zhang W, Yu X, Wang Z, Su Z, Wei G (2016) When biomolecules meet graphene: from molecular level interactions to material design and applications. Nanoscale 8:19491
Wang L, Zhang Y, Wu A, Wei G (2017) Designed graphene-peptide nanocomposites for biosensor applications: A review. Anal Chim Acta 985:24
Qu Y, Ma M, Wang Z, Zhan G, Li B, Wang X, Fang H, Zhang H, Li C (2013) Sensitive amperometric biosensor for phenolic compounds based on graphene–silk peptide/tyrosinase composite nanointerface. Biosens Bioelectron 44:85
Guo CG, Ng SR, Khoo SY, Zheng X, Chen P, Chang Li CM (2012) RGD-peptide functionalized graphene biomimetic live-cell sensor for real-time detection of nitric oxide molecules. ACS Nano 6:6944
No YH, Kim NH, Gnapareddy B, Choi B, Kim YT, Dugasani SR, Lee OS, Kim KH, Ko YS, Lee S, Lee SW, Park SH, Eom K, Kim YH (2017) Nature-inspired construction of two-dimensionally self-assembled peptide on pristine graphene. J Phys Chem Lett 8:3734
Guo YN, Lu X, Weng J, Leng Y (2013) Density functional theory study of the interaction of arginine-glycine-aspartic acid with graphene, defective graphene, and graphene oxide. J Phys Chem C 117:5708
De Leo F, Magistrato A, Bonifazi D (2015) Interfacing proteins with graphitic nanomaterials: from spontaneous attraction to tailored assemblies. Chem Soc Rev 44(19):6916
Reches M, Gazit EE (2003) Science 300:625
Yan X, Zhu P, Li J (2010) Self-assembly and application of diphenylalanine-based nanostructures. Chem Soc Rev 39:1877
Tomba G, Lingenfelder M, Costantini G, Kern K, Klappenberger F, Barth JV, Ciacchi LC, De Vita A (2007) Structure and energetics of diphenylalanine self-assembling on Cu(110). J Phys Chem A 111(49):12740
Giannozzi P, Andreussi O, Brumme T, Bunau O, Nardelli MB, Calandra M, Car R, Cavazzoni C, Ceresoli D, Cococcioni M, Colonna N, Carnimeo I, Corso AD, de Gironcoli S, Delugas P, Jr RAD, Ferretti A, Floris A, Fratesi G, Fugallo G, Gebauer R, Gerstmann U, Giustino F, Gorni T, Jia J, Kawamura M, Ko HY, Kokalj A, Kkbenli E, Lazzeri M, Marsili M, Marzari N, Mauri F, Nguyen NL, Nguyen HV, de-la Roza AO, Paulatto L, Ponc S, Rocca D, Sabatini R, Santra B, Schlipf M, Seitsonen AP, Smogunov A, Timrov I, Thonhauser T, Umari P, Vast N, Wu X, Baroni S (2017) Advanced capabilities for materials modelling with quantum espresso. J Phys Condensed Matter 29:465901
Perdew JP, Burke K, Ernzerhof M (1996) Generalized gradient approximation made simple. Phys Rev Lett 77:3865
Blochl PE (1994) Projector augmented-wave method. Phys Rev B 50:17953
Monkhorst HJ, Pack JD (1976) Special points for brillouin-zone integrations. Phys Rev B 13:5188
Grimme S, Antony J, Ehrlich S, Krieg H (2010) A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-d) for the 94 elements h-pu. J Chem Phys 132:154104
Rodríguez S, Albanesi EA (2019) Electronic transport in a graphene single layer: application in amino acid sensing. Phys Chem Chem Phys 21:597
Rajesh C, Majumder C, Mizuseki H, Kawazoe Y (2009) A theoretical study on the interaction of aromatic amino acids with graphene and single walled carbon nanotube. J Chem Phys 130(12):124911
Acknowledgements
The financial support of the Brazilian National Council for Scientific and Technological Development (CNPq) Brazilian agency under project Universal (grant 427527/2016-3) is gratefully acknowledged. We thank LCC/UNIFESSPA for the computation facilities made available for this work.
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Silva-Alves, D.A., Camara, M.V.S., Chaves-Neto, A.M.J. et al. Theoretical study of the adsorption of diphenylalanine on pristine graphene. Theor Chem Acc 139, 83 (2020). https://doi.org/10.1007/s00214-020-02594-z
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DOI: https://doi.org/10.1007/s00214-020-02594-z