Halomonas populi sp. nov. isolated from Populus euphratica

Abstract

Three yellow-pigmented, Gram-stain-negative, aerobic, motile by flagella and rod-shaped strains, designated as MC^T, PC and RC, were isolated from stems of Populus euphratica. Growth of those three strains occurs at 4–40 °C, pH 6.0–10.0 and with 0.5–18.0% (w/v) NaCl. Respiratory quinones contained ubiquinone-9 and ubiquione-8 as major and minor components, respectively. Major fatty acids (> 10%) were summed feature 8 (C_18:1ω6c and/or C_18:1ω7c), summed feature 3 (C_16:1ω6c and/or C_16:1ω7c) and C_16:0. Polar lipids included diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, two unidentified phospholipids, one unidentified aminolipid, one unidentified glycolipid and four unidentified lipids. Strains MC^T, PC and RC shared pairwise 16S rRNA gene sequence similarities of 99.9–100.0%, and showed higher similarities of 98.4–98.5% with Halomonas songnenensis NEAU-ST10-39^T and 98.3–98.4% with Halomonas nanhaiensis YIM M 13059^T than to other Halomonas type strains. Genomic comparisons revealed that those three strains had the pan-genome consisting of 4446 orthologous clusters, among which 676 orthologous clusters were absent in other Halomonas type strains. Phylogenomic tree indicated that strains MC^T, PC and RC formed an independently stable clade with Halomonas nanhaiensis YIM M 13059^T and Halomonas songnenensis NEAU-ST10-39^T. The average nucleotide identity and digital DNA–DNA hybridization values between those three strains and other Halomonas type strains were < 89.9% and < 39.3%, respectively. Based upon phenotypic, chemotaxonomic, phylogenetic and genomic results, strains MC^T, PC and RC represent a novel species in the genus Halomonas, for which the name Halomonas populi sp. nov. is proposed. The type strain is MC^T (= JCM 33545^T = MCCC 1K03942^T).