Skip to main content
Log in

Effect of changes at the conserved + 3 position of mature archaellins on in vitro cleavage by the pre-archaellin peptidase FlaK of Methanococcus maripaludis

  • Original Paper
  • Published:
Archives of Microbiology Aims and scope Submit manuscript

Abstract

Archaea swim using archaella that are domain-specific rotary type IV pilus-like appendages. The structural components of the archaellum filament are archaellins, initially made as preproteins with type IV pilin-like signal peptides which are removed by signal peptidases that are homologues of prepilin peptidases that remove signal peptides from type IV pilins. N-terminal sequences of archaellins, including the signal peptide cleavage site, are conserved and various positions have been previously shown to be critical for signal peptide removal. Archaellins have an absolute conservation of glycine at the + 3 position from the signal peptide cleavage site. To investigate its role in signal peptide cleavage, I used archaellin variants in which the + 3 glycine was mutated to all other possibilities in in vitro cleavage reactions. Cleavage was observed with ten different amino acids at the + 3 position, indicating that the observed glycine conservation is not required for this essential processing step.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  • Albers SV, Jarrell KF (2015) Archaellum moves Archaea with distinction. Microbe 10:283–288

    Google Scholar 

  • Albers SV, Jarrell KF (2018) The archaellum: an update on the unique archaeal motility structure. Trends Microbiol 26:351–362

    CAS  PubMed  Google Scholar 

  • Albers SV, Szabo Z, Driessen AJM (2003) Archaeal homolog of bacterial type IV prepilin signal peptidases with broad substrate specificity. J Bacteriol 185:3918–3925

    CAS  PubMed  PubMed Central  Google Scholar 

  • Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS (1979) Methanogens: reevaluation of a unique biological group. Microbiol Rev 43:260–296

    CAS  PubMed  PubMed Central  Google Scholar 

  • Bardy SL, Jarrell KF (2002) FlaK of the archaeon Methanococcus maripaludis possesses preflagellin peptidase activity. FEMS Microbiol Lett 208:53–59

    CAS  PubMed  Google Scholar 

  • Bardy SL, Jarrell KF (2003) Cleavage of preflagellins by an aspartic acid signal peptidase is essential for flagellation in the archaeon Methanococcus voltae. Mol Microbiol 50:1339–1347

    CAS  PubMed  Google Scholar 

  • Bayley DP, Jarrell KF (1999) Overexpression of Methanococcus voltae flagellin subunits in Escherichia coli and Pseudomonas aeruginosa: a source of archaeal preflagellin. J Bacteriol 181:4146–4153

    CAS  PubMed  PubMed Central  Google Scholar 

  • Bayley DP, Florian V, Klein A, Jarrell KF (1998) Flagellin genes of Methanococcus vannielii: amplification by the polymerase chain reaction, demonstration of signal peptides and identification of major components of the flagellar filament. Mol Gen Genet 258:639–645

    CAS  PubMed  Google Scholar 

  • Boone DR, Mah RA (2001) Methanosarcina. In: Boone DR, Catsenholz RW (eds) Bergey's Manual of Systematic Bacteriology, 2nd edn. Springer, New York, pp 269–276

    Google Scholar 

  • Bradley DE (1980) A function of Pseudomonas aeruginosa PAO polar pili: twitching motility. Can J Microbiol 26:146–154

    CAS  PubMed  Google Scholar 

  • Burrows LL (2012) Pseudomonas aeruginosa twitching motility: type IV pili in action. Annu Rev Microbiol 66:493–520

    CAS  PubMed  Google Scholar 

  • Coburger I, Schaub Y, Roeser D, Hardes K, Maeder P, Klee N, Steinmetzer T, Imhof D, Diederich WE, Than ME (2016) Identification of inhibitors of the transmembrane protease FlaK of Methanococcus maripaludis. Microbiologyopen 5:637–646

    CAS  PubMed  PubMed Central  Google Scholar 

  • Correia JD, Jarrell KF (2000) Posttranslational processing of Methanococcus voltae preflagellin by preflagellin peptidases of M. voltae and other methanogens. J Bacteriol 182:855–858

    CAS  PubMed  PubMed Central  Google Scholar 

  • Daum B, Vonck J, Bellack A, Chaudhury P, Reichelt R, Albers SV, Rachel R, Kühlbrandt W (2017) Structure and in situ organisation of the Pyrococcus furiosus archaellum machinery. Elife 6:e27470

    PubMed  PubMed Central  Google Scholar 

  • Faguy DM, Jarrell KF, Kuzio J, Kalmokoff ML (1994) Molecular analysis of archaeal flagellins: similarity to the type IV pilin-transport superfamily widespread in bacteria. Can J Microbiol 40:67–71

    CAS  PubMed  Google Scholar 

  • Faguy DM, Bayley DP, Kostyukova AS, Thomas NA, Jarrell KF (1996) Isolation and characterization of flagella and flagellin proteins from the thermoacidophilic archaea Thermoplasma volcanium and Sulfolobus shibatae. J Bacteriol 178:902–905

    CAS  PubMed  PubMed Central  Google Scholar 

  • Galagan JE, Nusbaum C, Roy A, Endrizzi MG, Macdonald P, FitzHugh W, Calvo S, Engels R, Smirnov S, Atnoor D, Brown A, Allen N, Naylor J, Stange-Thomann N, DeArellano K, Johnson R, Linton L, McEwan P, McKernan K, Talamas J, Tirrell A, Ye W, Zimmer A, Barber RD, Cann I, Graham DE, Grahame DA, Guss AM, Hedderich R, Ingram-Smith C, Kuettner HC, Krzycki JA, Leigh JA, Li W, Liu J, Mukhopadhyay B, Reeve JN, Smith K, Springer TA, Umayam LA, White O, White RH, Conway de Macario E, Ferry JG, Jarrell KF, Jing H, Macario AJ, Paulsen I, Pritchett M, Sowers KR, Swanson RV, Zinder SH, Lander E, Metcalf WW, Birren B (2002) The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res 12:532–542

    CAS  PubMed  PubMed Central  Google Scholar 

  • Henche AL, van Wolferen M, Ghosh A, Albers SV (2014) Dissection of key determinants of cleavage activity in signal peptidase III (SPaseIII) PibD. Extremophiles 18:905–913

    CAS  PubMed  Google Scholar 

  • Hu J, Xue Y, Lee S, Ha Y (2011) The crystal structure of GxGD membrane protease FlaK. Nature 475:528–531

    CAS  PubMed  PubMed Central  Google Scholar 

  • Jarrell KF, Albers SV (2012) The archaellum: an old motility structure with a new name. Trends Microbiol 20:307–312

    CAS  PubMed  Google Scholar 

  • Javor B, Requadt C, Stoeckenius W (1982) Box-shaped halophilic bacteria. J Bacteriol 151:1532–1542

    CAS  PubMed  PubMed Central  Google Scholar 

  • Jones GM, Wu J, Ding Y, Uchida K, Aizawa S, Robotham A, Logan SM, Kelly J, Jarrell KF (2012) Identification of genes involved in the acetamidino group modification of the flagellin N-linked glycan of Methanococcus maripaludis. J Bacteriol 194:2693–2702

    CAS  PubMed  PubMed Central  Google Scholar 

  • Kalmokoff ML, Jarrell KF (1991) Cloning and sequencing of a multigene family encoding the flagellins of Methanococcus voltae. J Bacteriol 173:7113–7125

    CAS  PubMed  PubMed Central  Google Scholar 

  • Kelly J, Logan SM, Jarrell KF, Vandyke DJ, Vinogradov E (2009) A novel N-linked flagellar glycan from Methanococcus maripaludis. Carbohydr Res 344:648–653

    CAS  PubMed  Google Scholar 

  • Kern T, Fischer MA, Deppenmeier U, Schmitz RA, Rother M (2016) Methanosarcina flavescens sp. nov., a methanogenic archaeon isolated from a full-scale anaerobic digester. Int J Syst Evol Microbiol 66:1533–1538

    CAS  PubMed  Google Scholar 

  • LaPointe CF, Taylor RK (2000) The type 4 prepilin peptidases comprise a novel family of aspartic acid proteases. J Biol Chem 275:1502–1510

    CAS  PubMed  Google Scholar 

  • Makarova KS, Koonin EV, Albers SV (2016) Diversity and evolution of type IV pili systems in Archaea. Front Microbiol 7:667

    PubMed  PubMed Central  Google Scholar 

  • Marwan W, Alam M, Oesterhelt D (1991) Rotation and switching of the flagellar motor assembly in Halobacterium halobium. J Bacteriol 173:1971–1977

    CAS  PubMed  PubMed Central  Google Scholar 

  • Meshcheryakov VA, Shibata S, Schreiber MT, Villar-Briones A, Jarrell KF, Aizawa SI, Wolf M (2019) High-resolution archaellum structure reveals a conserved metal-binding site. EMBO Rep 20:e46340

    PubMed  PubMed Central  Google Scholar 

  • Moore BC, Leigh JA (2005) Markerless mutagenesis in Methanococcus maripaludis demonstrates roles for alanine dehydrogenase, alanine racemase, and alanine permease. J Bacteriol 187:972–979

    CAS  PubMed  PubMed Central  Google Scholar 

  • Nair DB, Jarrell KF (2015) Pilin processing follows a different temporal route than that of archaellins in Methanococcus maripaludis. Life (Basel) 5:85–101

    CAS  Google Scholar 

  • Nair DB, Chung DKC, Schneider J, Uchida K, Aizawa SI, Jarrell KF (2013) Identification of an additional minor pilin essential for piliation in the archaeon Methanococcus maripaludis. PLoS ONE 8:e83961

    PubMed  PubMed Central  Google Scholar 

  • Ng SY, Chaban B, VanDyke DJ, Jarrell KF (2007) Archaeal signal peptidases. Microbiology 153:305–314

    CAS  PubMed  Google Scholar 

  • Ng SY, VanDyke DJ, Chaban B, Wu J, Nosaka Y, Aizawa S, Jarrell KF (2009) Different minimal signal peptide lengths recognized by the archaeal prepilin-like peptidases FlaK and PibD. J Bacteriol 191:6732–6740

    CAS  PubMed  Google Scholar 

  • Ng SYM, Wu J, Nair DB, Logan SM, Robotham A, Tessier L, Kelly JF, Uchida K, Aizawa S, Jarrell KF (2011) Genetic and mass spectrometry analysis of the unusual type IV-like pili of the archaeon Methanococcus maripaludis. J Bacteriol 193:804–814

    CAS  PubMed  Google Scholar 

  • Oren A, Ventosa A, Gutierrez MC, Kamekura M (1999) Haloarcula quadrata sp. nov., a square, motile archaeon isolated from a brine pool in Sinai (Egypt). Int J Syst Bacteriol 49:1149–1155

    CAS  PubMed  Google Scholar 

  • Poweleit N, Ge P, Nguyen HH, Loo RR, Gunsalus RP, Zhou ZH (2016) CryoEM structure of the Methanospirillum hungatei archaellum reveals structural features distinct from the bacterial flagellum and type IV pili. Nature Microbiol 2:16222

    CAS  Google Scholar 

  • Skerker JM, Berg HC (2001) Direct observation of extension and retraction of type IV pili. Proc Natl Acad Sci USA 98:6901–6904

    CAS  PubMed  Google Scholar 

  • Streif S, Staudinger WF, Marwan W, Oesterhelt D (2008) Flagellar rotation in the archaeon Halobacterium salinarum depends on ATP. J Mol Biol 384:1–8

    CAS  PubMed  Google Scholar 

  • Szabo Z, Stahl AO, Albers SV, Kissinger JC, Driessen AJM, Pohlschroder M (2007) Identification of diverse archaeal proteins with class III signal peptides cleaved by distinct archaeal prepilin peptidases. J Bacteriol 189:772–778

    CAS  PubMed  Google Scholar 

  • Thomas NA, Bardy SL, Jarrell KF (2001a) The archaeal flagellum: a different kind of prokaryotic motility structure. FEMS Microbiol Rev 25:147–174

    CAS  PubMed  Google Scholar 

  • Thomas NA, Chao ED, Jarrell KF (2001b) Identification of amino acids in the leader peptide of Methanococcus voltae preflagellin that are important in posttranslational processing. Arch Microbiol 175:263–269

    CAS  PubMed  Google Scholar 

  • Tripepi M, Imam S, Pohlschroder M (2010) Haloferax volcanii flagella are required for motility but are not involved in PibD-dependent surface adhesion. J Bacteriol 192:3093–3102

    CAS  PubMed  PubMed Central  Google Scholar 

  • Ventosa A (2001) Haloarcula. In: Boone DR, Castenholz RW (eds) Bergey's Manual of Systematic Bacteriology, 2nd edn. Springer, New York, pp 305–309

    Google Scholar 

  • Wolfe MS (2013) Toward the structure of presenilin/γ-secretase and presenilin homologs. Biochim Biophys Acta 1828:2886–2897

    CAS  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

This research was supported by a Discovery Grant from the Natural Sciences and Engineering Research Council of Canada (NSERC).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ken F. Jarrell.

Additional information

Communicated by Michael Rother.

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic supplementary material

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Jarrell, K.F. Effect of changes at the conserved + 3 position of mature archaellins on in vitro cleavage by the pre-archaellin peptidase FlaK of Methanococcus maripaludis. Arch Microbiol 202, 1669–1675 (2020). https://doi.org/10.1007/s00203-020-01873-4

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00203-020-01873-4

Keywords

Navigation