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Use of an acidophilic yeast strain to enable the growth of leaching bacteria on solid media

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Abstract

In this study, a Candida digboiensis strain was isolated from a heap leaching plant in Zambia and used in double-layer agar plate to efficiently isolate and purify leaching bacteria. Unlike Acidiphilium sp., the yeast strain was tetrathionate tolerant and could metabolize a great range of organic compounds including organic acids. These properties allowed the yeast strain to enable and fasten the growth of iron and sulfur oxidizers on double-layer agar plate. The isolates were identified as Acidithiobacillus ferrooxidans FOX1, Leptospirillun ferriphilum BN, and Acidithiobacillus thiooxidans ZMB. These three leaching bacteria were inhibited by organic acids such as acetic and propionic acids; however, their activities were enhanced by Candida digboiensis NB under dissolved organic matter stress.

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References

  • White TJ et al (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfang DH, Sninsky JJ (eds) PCR protocols—a guide to methods and applications. Academic Press, San Diego

  • Prasad GS et al (2005) Candida digboiensis sp. nov., a novel anamorphic yeast species from an acidic tar sludge-contaminated oilfield. Int J Syst Evol Microbiol 55:967–972

  • Liu J et al (2007) Isolation of Leptospirillum ferriphilum by single-layered solid medium. J Cent South Univ Technol 14(4):467–473

  • Tamura K et al (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599

  • Yin H et al (2008) Molecular diversity of 16S rRNA and gyrB genes in copper mines. Arch Microbiol 189:101–110

  • Navarro CA et al (2009) Transcriptional and functional studies of At. ferrooxidans genes related to survival in the presence of copper. Appl Environ Microbiol Am Soc Microbiol 75(19):6102–6109

  • Selvam A et al (2010) Food waste decomposition in leachbed reactor: role of neutralizing solutions on the leachate quality. Bioresour Technol 114(6):1707–1714

  • Zhou J et al (2013) Degradation of inhibitory substances in sludge by Galactomyces sp. Z3 and the role of its extracellular polymeric substances in improving bioleaching. Bioresour Technol 132:217–223

  • APHA (2005) Standard methods for the examination of water and wastewater. American Public Health Association, Washington, p 21

  • Fahimeh NM (2009) Study of ability and role of native bacteria on the bioleaching of Zinc and optimization of growth conditions: PhD thesis/Department of biotechnology; University of Pune, Pune, p 215

  • Gu X, Wong JWC (2007) Degradation of inhibitory substances by heterotrophic microorganisms during bioleaching of heavy metals from anaerobically digested sewage sludge. Chemosphere 69:311–318

  • Hallberg KB, Johnson DB (2003) Novel acidophiles isolated from moderately acidic mine drainage water. Hydrometallurgy 71:139–148

  • Johnson DB (1995) Selective solid media for isolating and enumerating acidophilic bacteria. J Microbiol Methods 23:205–218

  • Johnson DB, Hallberg KB (2007) Techniques for detecting and identifying acidophilic mineral-oxidizing microorganisms. In: Rawlings DE, Johnson BD (eds) Biomining. Springer, New York

  • Johnson DB, McGinness S (1991) A highly efficient and universal solid medium for growing mesophilic and moderately thermophilic iron-oxidizing acidophilic bacteria. J Microbiol Methods 13:113–122

  • Johnson DB, Okibe N, Halberg KB (2005) Differentiation and identification of iron-oxidizing acidophilic bacteria using cultivation techniques and amplified ribosomal DNA restriction enzyme analysis (ARDREA). J Microbiol Methods 60:299–313

  • Mitesh JP, Tipre DR, Dave SR (2009) Isolation and identification of a Candida digboiensis strain from an extreme acid mine drainage of the Lignite Mine, Gujarat. J Basic Microbiol 49(6):564–571

  • Mitesh JP, Devayani RT, Shailesh RD (2011) Isolation, identification, characterization and polymetallic concentrate leaching studies of tryptic soy- and peptone-resistant thermotolerant Acidithiobacillus ferrooxidans SRDSM2. Bioresour Technol 102:1602–1607

  • Ojumu TV, Petersen J (2011) The kinetics of ferrous ion oxidation by Leptospirillum ferriphilum in continuous culture: the effect of pH. Hydrometallurgy 106:5–11

  • Ruan R, Jiankang W, Jinghe C (2006) Bacerial heap-leaching: a practice in Zijinshan copper mine. Hydrometallurgy 83:77–82

  • Sood N, Lal B (2009) Isolation of a novel yeast strain Candida digboiensis TERI ASN6 capable of degrading petroleum hydrocarbons in acidic conditions. J Environ Manage 90(5):1728–1736

  • Vogel AI (1962) A textbook of quantitative inorganic analysis, 3rd edn. ELBS and Longman, London

  • Wang S, Zheng G, Zhou L (2010) Heterotrophic microorganism Rhodotorula mucilaginosa R30 improves tannery sludge bioleaching through elevating dissolved CO2 and extracellular polymeric substances levels in bioleach solution as well as scavenging toxic DOM to Acidithiobacillus species. Water Res Elsevier 44:5423–5431

  • Yamamoto S, Harayama S (1995) PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl Environ Microbiol 61:1104–1109

  • Zheng G, Zhou L, Wang S (2009) An acid-tolerant heterotrophic microorganism role in improving tannery sludge bioleaching conducted in successive multibatch reaction systems. Environ Sci Technol 43:4151–4156

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Acknowledgments

This work was supported by High-Tech Research and Development Program (863 Program: 2012AA061502) and the National Key Basic Research Program of China (973 Program: No. 2010CB630901).

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Correspondence to Baba Ngom.

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Communicated by Erko Stackebrandt.

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Ngom, B., Liang, Y., Liu, Y. et al. Use of an acidophilic yeast strain to enable the growth of leaching bacteria on solid media. Arch Microbiol 197, 339–346 (2015). https://doi.org/10.1007/s00203-014-1051-6

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  • DOI: https://doi.org/10.1007/s00203-014-1051-6

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