Abstract
In many wild legumes, attempts to cultivate nodule bacteria fail. We hypothesized that the limited culturability could be related to injury from oxidative stress caused by disruption of plant tissues during isolation. To test that, we isolated bacteria from nodules of Hedysarum spinosissimum and Tetragonolobus purpureus using buffers supplemented with scavenging systems to prevent damage from reactive oxygen species (ROS). Treatments included the following: antioxidants (glutathione, ascorbate, EDTA) or enzymes (catalase, peroxidase, superoxide dismutase), tested either as modified squashing buffers or added in plates. Some combinations yielded dramatic increases of culturability. Different endophytes were found, including additional Rhizobiaceae that were not the primary symbiont and were unable to nodulate. Their H2O2 tolerance in broth culture showed differences consistent with the unequal culturability observed. In wild legumes species, ROS generation during extraction appears to be a major factor limiting microbiota isolation, and protocols presented here significantly improve the recovery of culturable bacterial endophytes from plants.
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Bai Y, Zhou X, Smith D (2003) Enhanced soybean plant growth due to co-inoculation of Bacillus strains with Bradyrhizobium japonicum. Crop Sci 43:1774–1781
Becana M, Matamoros M, Udvardi M, Dalton DA (2010) Recent insights into antioxidant defenses of legume root nodules. New Phytol 188:960–976
Benhizia Y, Benhizia H, Benguedouar A, Muresu R, Giacomini A, Squartini A (2004) Gamma proteobacteria can nodulate legumes of the genus Hedysarum. Syst Appl Microbiol 27:462–468
Chang C, Damiani I, Puppo A, Frendo P (2009) Redox changes during the legume–Rhizobium symbiosis. Mol Plant 2:370–377
Dalton DA, Boniface C, Turner Z, Lindahl A, Kim HJ, Jelinek L, Govindarajulu M, Taylor CG (2009) Physiological roles of glutathione S-transferases in soybean root nodules. Plant Physiol 150:521–530
De Lajudie P, Willems A, Nick G, Mohamed TS, Torck U, Filai-Maltouf A, Kersters K, Dreyfus B, Lindström K, Gillis M (1999) Agrobacterium bv. 1 strains isolated from nodules of tropical legumes. Syst Appl Microbiol 22:119–132
Fones H, Preston GM (2012) Reactive oxygen and oxidative stress tolerance in plant pathogenic Pseudomonas. FEMS Microbiol Lett 327:1–8
Glyan’ko AK, Vasil’eva GG (2010) Reactive oxygen and nitrogen species in legume-rhizobial symbiosis: a review. Appl Biochem Microbiol 46:15–22
Jamet A, Mandon K, Puppo A, Hérouart D (2007) H2O2 is required for optimal establishment of the Medicago sativa/Sinorhizobium meliloti symbiosis. J Bacteriol 189:8741–8745
Liu J, Wang ET, Ren DW, Chen WX (2010) Mixture of endophytic Agrobacterium and Sinorhizobium meliloti strains could induce nonspecific nodulation on some woody legumes. Arch Microbiol 192:229–234
López-López A, Rogel MA, Ormeňo-Orrillo E, Martínez-Romero J, Martínez-Romero E (2010) Phaseolus vulgaris seed-borne endophytic community with novel bacterial species such as Rhizobium endophyticum sp. nov. Syst Appl Microbiol 33:322–327
Matamoros MA, Dalton DA, Clemente MR, Rubio MC, Ramos J, Becana M (2003) Biochemistry and molecular biology of antioxidants in the rhizobia-legume symbiosis. Plant Physiol 133:1–11
Mhamdi R, Mrabet M, Laguerre G, Tiwari R, Aouani ME (2005) Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains. Can J Microbiol 51:105–111
Mizunoe Y, Wai SN, Takade A, Yoshida S (1999) Restoration of culturability of starvation-stressed and low-temperature-stressed Escherichia coli O157 cells by using H2O2-degrading compounds. Arch Microbiol 172:63–67
Mrabet M, Mnasri B, Romdhane S, Laguerre G, Aouani ME, Mhamdi R (2006) Agrobacterium strains isolated from root nodules of common bean specifically reduce nodulation by Rhizobium gallicum. FEMS Microbiol Ecol 56:304–309
Muresu R, Polone E, Sulas L, Baldan B, Tondello A, Delogu G, Cappuccinelli P, Alberghini S, Benhizia Y, Benhizia H, Benguedouar A, Mori B, Calamassi R, Dazzo FB, Squartini A (2008) Coexistence of predominantly nonculturable rhizobia with diverse, endophytic bacterial taxa within nodules of wild legumes. FEMS Microbiol Ecol 63(3):383–400
Orikasa Y, Nodasaka Y, Ohyama T, Okuyama H, Ichise N, Yumoto I, Morita N, Wei M, Ohwada T (2010) Enhancement of the nitrogen fixation efficiency of genetically-engineered Rhizobium with high catalase activity. J Biosci Bioeng 110:397–402
Philipson MN, Blair ID (1957) Bacteria in clover root tissue. Can J Microbiol 3:125–129
Salzwedel JL, Dazzo FB (1993) pSym nod gene influence on elicitation of peroxidase activity from white clover and pea roots by rhizobia and their cell-free supernatants. Mol Plant-Microbe Interact 6:127–134
Sturz AV, Christie BR, Matheson BG, Nowak J (1997) Biodiversity of endophytic bacteria which colonize red clover nodules, roots, stems and foliage and their influence on growth. Biol Fertil Soils 25:13–19
Tokala RK, Strap JL, Jung CM, Crawford DL, Hamby Salove M, Deobald LA, Bailey F, Morra MJ (2002) Novel plant-microbe rhizosphere interaction involving Streptomyces lydicus WYEC108 and the pea plant (Pisum sativum). Appl Environ Microbiol 68:2161–2171
Vasil’eva GG, Glyan’ko AK, Mironova NV (2005) Hydrogen peroxide content and catalase activity on inoculation with root nodule bacteria of pea seedlings with different ability for nodulation. Appl Biochem Microbiol 41:547–550
Vincent JM (1970) A manual for the practical study of the root-nodule bacteria, IBP Handbook no. 15. Blackwell Scientific Publications, Oxford
Wolff SP (1994) Ferrous ion oxidation in presence of ferric ion indicator xylenol orange for measurement of hydroperoxides. Methods Enzymol 233:182–189
Zakhia F, Jeder H, Willems A, Gillis M, Dreyfus B, de Lajudie P (2006) Diverse bacteria associated with root nodules of spontaneous legumes in Tunisia and first report for nifH-like gene within the genera Microbacterium and Starkeya. Microbial Ecol 51:375–393
Acknowledgments
We thank Piero Cappuccinelli for stimulating discussions. This work was supported in part by a grant from Fondazione Banco di Sardegna 2010 p1293/2010.1163 to RM and by Ex-60 % funds of the University of Padova to AS and BB. AT. was supported by an Assegno di Ricerca grant of the University of Padova # CPDR093189.
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Communicated by Jörg Overmann.
Rosella Muresu and Alessandra Tondello: equal contributors.
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Muresu, R., Tondello, A., Polone, E. et al. Antioxidant treatments counteract the non-culturability of bacterial endophytes isolated from legume nodules. Arch Microbiol 195, 385–391 (2013). https://doi.org/10.1007/s00203-013-0886-6
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DOI: https://doi.org/10.1007/s00203-013-0886-6