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Measuring and visualizing the stability of biomarker selection techniques

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Abstract

Feature selection is an essential step when dealing with high-dimensional data. In a diagnostic setting, marker genes have to be selected for specialized low-dimensional gene expression assays. A meaningful biomarker selection is expected to produce stable results in different resampling settings. We define an index to quantify stability and introduce a statistical testing procedure for stability. We also present new methods of visualizing stability and associating it with the accuracy of a subsequent classification process.

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Authors and Affiliations

  1. Research group Bioinformatics and Systems Biology, Institute of Neural Information Processing, University of Ulm, 89069, Ulm, Germany

    Ludwig Lausser, Christoph Müssel, Markus Maucher & Hans A. Kestler

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  1. Ludwig Lausser
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  2. Christoph Müssel
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  3. Markus Maucher
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  4. Hans A. Kestler
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Correspondence to Hans A. Kestler.

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Lausser, L., Müssel, C., Maucher, M. et al. Measuring and visualizing the stability of biomarker selection techniques. Comput Stat 28, 51–65 (2013). https://doi.org/10.1007/s00180-011-0284-y

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  • DOI: https://doi.org/10.1007/s00180-011-0284-y

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