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Meta-analysis of the Gly482Ser variant in PPARGC1A in type 2 diabetes and related phenotypes



Peroxisome proliferator-activated receptor-γ co-activator-1α (PPARGC1A) is a transcriptional co-activator with a central role in energy expenditure and glucose metabolism. Several studies have suggested that the common PPARGC1A polymorphism Gly482Ser may be associated with risk of type 2 diabetes, with conflicting results. To clarify the role of Gly482Ser in type 2 diabetes and related human metabolic phenotypes we genotyped this polymorphism in a case-control study and performed a meta-analysis of relevant published data.

Materials and methods

Gly482Ser was genotyped in a type 2 diabetes case-control study (N=1,096) using MassArray technology. A literature search revealed publications that examined Gly482Ser for association with type 2 diabetes and related metabolic phenotypes. Meta-analysis of the current study and relevant published data was undertaken.


In the pooled meta-analysis, including data from this study and seven published reports (3,718 cases, 4,818 controls), there was evidence of between-study heterogeneity (p<0.1). In the fixed-effects meta-analysis, the pooled odds ratio for risk of type 2 diabetes per Ser482 allele was 1.07 (95% CI 1.00–1.15, p=0.044). Elimination of one of the studies from the meta-analysis gave a summary odds ratio of 1.11 (95% CI 1.04–1.20, p=0.004), with no between-study heterogeneity (p=0.475). For quantitative metabolic traits in normoglycaemic subjects, we also found significant between-study heterogeneity. However, no significant association was observed between Gly482Ser and BMI, fasting glucose or fasting insulin.


This meta-analysis of data from the current and published studies supports a modest role for the Gly482Ser PPARGC1A variant in type 2 diabetes risk.


Peroxisome proliferator-activated receptor-γ co-activator-1α (PPARGC1A) is a potent transcriptional co-activator of nuclear receptors, including PPAR-α and PPAR-γ, and controls transcription of genes involved in adaptive thermogenesis, adipogenesis and oxidative metabolism [13]. PPARGC1A also plays a key role in the regulation of hepatic glucose output through the control of gluconeogenesis [4, 5], and modulates the expression of the insulin-regulated glucose transporter GLUT4 through an interaction with the transcription factor MADS box transcription enhancer factor 2, polypeptide C (also known as MEF2C) [6]. Moreover, decreased PPARGC1A expression was detected in muscle of individuals with diabetes and in unaffected subjects with a family history of diabetes [7].

In view of its extensive role in metabolism, PPARGC1A has been considered a candidate gene for type 2 diabetes and other intermediary metabolic phenotypes. Specifically, a common PPARGC1A polymorphism, Gly482Ser, has been studied for association with type 2 diabetes with conflicting results [812]. The Gly482Ser variant has also been associated with insulin resistance [9], indices of obesity in women [13], and mean insulin secretory response and lipid oxidation [11]. More recently, a report found an association between specific PPARGC1A haplotypes and 30-min and 60-min post-load glucose levels and indices of beta cell function, and a borderline significant association with type 2 diabetes; however, no one single-nucleotide polymorphism (SNP), including Gly482Ser, was significantly associated with type 2 diabetes [14]. Haplotypes of PPARGC1A have also been found to be associated with indices of glucose tolerance in non-diabetic offspring of type 2 diabetes subjects [15]. Considering the high plausibility of PPARGC1A as a functional candidate gene for type 2 diabetes predisposition, and in light of the conflicting results from earlier studies, we evaluated the role of the Gly482Ser polymorphism in PPARGC1A in type 2 diabetes and related metabolic phenotypes.

It has been demonstrated that to attain sufficient power to establish the role of certain polymorphisms and the risk of disease many thousands of samples are often required. Frequently, these samples are not available in a single study, and meta-analysis is used to pool together the results from several different studies. In type 2 diabetes, meta-analysis has been used successfully to establish the role of risk alleles for type 2 diabetes [1619]. Towards this end, we have combined results from genotyping the Gly482Ser variant in our current study with those from available published studies and performed a meta-analysis of the dataset.

Subjects and methods

European prospective investigation of cancer-Norfolk subjects

This is a nested case-control study within the European Prospective Investigation of Cancer (EPIC) – Norfolk prospective cohort study; both the case-control [20] and full cohort study [20, 21] have previously been described in detail. Briefly, the case-control study consists of 417 incident type 2 diabetes cases and two sets of 417 controls, each matched in terms of age, sex, time in study and family physician, with one set additionally matched for BMI. A case was defined by a doctor’s diagnosis of type 2 diabetes, with no insulin prescribed within the first year after diagnosis, and/or HbA1c >7% at baseline or the follow-up health check. Controls were selected from those in the cohort who had not reported diabetes, cancer, stroke or myocardial infarction at baseline, and who had not developed diabetes by the time of selection. Potential controls with measured HbA1c levels >6% were excluded. DNA was available for this analysis from 355 cases and 741 controls. Informed consent was granted by all participating subjects and ethical approval for the study was granted by the Cambridge Local Research Ethics Committee.


Samples were arrayed on 96-well plates, with three replicates and one water control per plate. Genotyping of samples was performed at the Wellcome Trust Sanger Institute, Cambridge, using an adaptation of the homogenous MassExtend protocol supplied by Sequenom for the MassArray system (Sequenom, San Diego, CA, USA) [22]. The genotyping success rate was 95.8%. There were no discordancies in replicate samples and results were in agreement with Hardy–Weinberg equilibrium.

Literature searches

A literature search was performed using the search terms ‘peroxisome proliferator activator receptor gamma coactivator 1’, ‘PPARGC1’, ‘PGC1’, ‘PGC-1’, ‘PGC-1alpha’ and ‘PGC1alpha’ with the AND search terms ‘polymorphism’, ‘SNP’ and ‘association’ to identify all genetic association studies published for this gene. This search included articles published up to June 2005. All studies that tested the Gly482Ser polymorphism for association with type 2 diabetes were included in this study, as well as those that published genotype counts and included data on fasting glucose, fasting insulin and BMI in normoglycaemic subjects. Data from these manuscripts was collated for meta-analysis, in a few instances the authors of a paper were contacted to obtain the original genotype distribution data when this data was not included in the original article [9, 14].

Statistical analysis

All statistical analyses were performed using the SAS statistical analysis software for Windows (version 8.02; SAS Institute, Cary, NC, USA) unless otherwise stated. For case-control studies, logistic regression was used to estimate odds ratios (OR). Simple linear regression was used to assess the association between genotype and relevant metabolic traits. In all primary analyses, we assumed a linear relation between the number of Ser alleles and the outcome or trait of interest. For the fixed-effects meta-analysis, pooled odds ratios for case-control studies and regression coefficients for quantitative traits studies were calculated using a variance-based method, weighting individual study results by the inverse of their variance. Results were considered significant at p<0.05. Heterogeneity among studies was assessed using the Q statistic. Results were considered heterogeneous when homogeneity was unlikely (p<0.10). To determine the stability of the summary risk estimates, we performed a sensitivity analysis based on the successive elimination of each study.


The details of published studies included in the current meta-analysis are summarised in Table 1 of the Electronic Supplementary Material. Genotype counts in cases and controls in the current study are represented in Fig. 1 (study 9). In the pooled dataset, which included all published data, the genotype distribution of the Gly482Ser polymorphism was similar in subjects with type 2 diabetes and controls (χ 2 2 df =4.67, p=0.097). The difference in the frequency of the Ser482 allele between cases and controls in the pooled dataset did reach nominal significance (χ 2 1 df =4.17, p=0.041). In the fixed-effects meta-analysis, which included eight studies, the pooled odds ratio for risk of type 2 diabetes per Ser allele was 1.07 (95% CI 1.00–1.15, p=0.044). As noted in Fig. 1, a test for heterogeneity among studies was statistically significant (Q=13.2, 7 df, p=0.069). In a sensitivity analysis, the summary odds ratio for risk of type 2 diabetes varied between 1.05 and 1.11 in an additive model (data not shown). In these analyses, exclusion of study 6 gave a summary OR of 1.11 (95% CI 1.04–1.20, p=0.004), and there was no between-study heterogeneity (Q=5.6, 6 df, p=0.475).

Table 1 Mean values for BMI, fasting insulin and fasting glucose in non-diabetic subjects according to Gly482Ser genotype
Fig. 1
figure 1

Odds ratios and 95% CIs for case-control studies and meta-analysis for an additive model. The squares represent the point estimates of the odds ratio for each study. The area of each is proportional to the percentage weight of each study in the overall meta-analysis. Horizontal lines represent the 95% CI for each individual study. The overall 95% CI for the meta-analysis is represented by the diamond. Genotype counts for subjects with type 2 diabetes (D) and normoglycaemic controls (C) are shown for each study as Gly/Gly / Gly/Ser/ Ser/Ser. Overall OR=1.071 (95% CI 1.002–1.145), p=0.044. Heterogeneity test: p=0.069

We also tested whether the Gly482Ser genotype influences relevant clinical phenotypes, such as BMI, fasting glucose and fasting insulin, in a total of 2,910 men and 1,576 women without type 2 diabetes. For each study population, mean values for BMI, fasting insulin and glucose according to Gly482Ser genotype in participants without diabetes are shown in Table 1. For these quantitative traits, there was no consistent association between metabolic factors and genotype in a pooled analysis. However, we found significant between-study heterogeneity for two metabolic traits (fasting insulin: Q=21.9, 4 df, p=0.0002; and BMI: Q=8.0, 4 df, p=0.092). In a sensitivity analysis, we found that exclusion of study 3 lead to the elimination of the between-study heterogeneity; however, no major effects were observed in these quantitative traits.


The current meta-analysis, which includes data on 8,536 participants, indicates that the PPARGC1A Ser482 allele may increase the risk of type 2 diabetes. It is possible, however, that publication bias may explain the observed association between this genetic variant and risk of type 2 diabetes. We could not detect any statistically significant association of the Gly482Ser polymorphism with BMI, fasting insulin or fasting glucose levels in a meta-analysis comprised of 4,486 normoglycaemic study participants.

Over the last 6 years the role of PPARGC1A in several aspects of energy expenditure, metabolism and glucose homeostasis has been elucidated. This has led to several studies assessing the association among polymorphisms, risk of type 2 diabetes and related metabolic traits. The only common non-synonymous change, the Gly482Ser polymorphism, has generated conflicting results. In this study we aimed to address this issue by performing a meta-analysis of the effect of the Gly482Ser polymorphism on type 2 diabetes, BMI, fasting insulin and fasting glucose levels.

In this meta-analysis, which included data from eight studies comprising 8,536 participants, there was evidence for a small linear effect of the Gly482Ser in type 2 diabetes risk (OR=1.07, p=0.044), despite the presence of marginal between-study heterogeneity (p=0.069). The summary odds ratio increased to 1.1 (p=0.004) and there was no between-study heterogeneity after elimination of one of the studies. We also found significant between-study heterogeneity in the quantitative trait analyses. However, in this analysis we found no statistically significant association between the Gly482Ser polymorphism and the three traits analysed (BMI, fasting insulin and fasting glucose). In each instance the heterogeneity observed in the association with type 2 diabetes or with the quantitative traits could be explained by a different constituent population of the meta-analysis. This heterogeneity could result from differences in other genetic and environmental factors between study populations, particularly in relation to selection and inclusion of participants and their demographic, metabolic and clinical characteristics. Other possible explanations for the observed between-study heterogeneity include genotype errors, publication bias, lack of statistical power to detect true effects and simple random variation around the true estimate of risk.

The variable effect of the Gly482Ser polymorphism on type 2 diabetes risk and related quantitative traits between populations could also be explained by the presence of other functional variants in linkage disequilibrium (LD) with Gly482Ser. The amount of LD between these putative variants and Gly482Ser could vary between the different populations tested, hence accounting for the observed differences in the effect of Gly482Ser in diabetes association and in mean values for phenotypic traits between populations. Other possible explanations for the heterogeneity observed are gene–gene and gene-environment interactions such that the effect of the Gly482Ser polymorphism is different in different populations. Indeed, evidence for gene-environment interaction at this gene has been demonstrated [2325]. Gene-environment interactions may lower the power to detect true associations when performing cross-sectional studies, including meta-analysis of cross-sectional studies, such as in this study.

In conclusion, our results, based on 8,536 study participants, suggest that the PPARGC1A Gly482Ser polymorphism is associated with risk of type 2 diabetes. However, larger scale studies are required to reliably confirm any association between this variant and the risk of type 2 diabetes.



odds ratio


peroxisome proliferator-activated receptor


peroxisome proliferator-activated receptor-γ co-activator-1α


single-nucleotide polymorphism


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This work was supported in part by The Wellcome Trust (I. Barroso, S. O’Rahilly, N. J. Wareham), and the Medical Research Council (N. J. Wareham, P. W. Franks, M. S. Sandhu). We also thank S. Bumpstead for technical assistance. The authors declare no conflicts of interest.

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Barroso, I., Luan, J., Sandhu, M.S. et al. Meta-analysis of the Gly482Ser variant in PPARGC1A in type 2 diabetes and related phenotypes. Diabetologia 49, 501–505 (2006).

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  • Association study
  • Meta-analysis
  • Polymorphism
  • Type 2 diabetes