Abstract
Drought stress adversely affects [Glycine max (L.) Merr] soybean at most developmental stages, which collectively results in yield reduction. Little information is available on relative contribution and chromosomal locations of quantitative trait loci (QTL) conditioning drought tolerance in soybean. A Japanese germplasm accession, PI 416937, was found to possess drought resistance. Under moisture-deficit conditions, PI 416937 wilted more slowly in the field than elite cultivars and has been used as a parent in breeding programs to improve soybean productivity. A recombinant inbred line (RIL) population was derived from a cross between PI 416937 and Benning, and the population was phenotyped for canopy wilting under rain-fed field conditions in five distinct environments to identify the QTL associated with the canopy-wilting trait. In a combined analysis over environments, seven QTL that explained 75 % of the variation in canopy-wilting trait were identified on different chromosomes, implying the complexity of this trait. Five QTL inherited their positive alleles from PI 416937. Surprisingly, the other two QTL inherited their positive alleles from Benning. These putative QTL were co-localized with other QTL previously identified as related to plant abiotic stresses in soybean, suggesting that canopy-wilting QTL may be associated with additional morpho-physiological traits in soybean. A locus on chromosome 12 (Gm12) from PI 416937 was detected in the combined analysis as well as in each individual environment, and explained 27 % of the variation in canopy-wilting. QTL identified in PI 416937 could provide an efficient means to augment field-oriented development of drought-tolerant soybean cultivars.
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Abdel-Haleem H, Lee GJ, Boerma RH (2011) Identification of QTL for increased fibrous roots in soybean. Theor Appl Genet 122:935–946
Babu RC, Nguyen BD, Chamarerk V, Shanmugasundaram P, Chezhian P, Jeyaprakash P, Ganesh SK, Palchamy A, Sadasivam S, Sarkarung S, Wade LJ, Nguyen HT (2003) Genetic analysis of drought resistance in rice by molecular markers: association between secondary traits and field performance. Crop Sci 43:1457–1469
Bartels D, Sunkar R (2005) Drought and salt tolerance in plants. Crit Rev Plant Sci 24:23–58
Bianchi-Hall CM, Carter TEJ, Rufty TW, Arellano C, Boerma HR, Ashley DA, Burton JW (1998) Heritability and resource allocation of aluminum tolerance derived from soybean PI 416937. Crop Sci 38:513–522
Boerma H, Hussey R, Phillips D, Wood E, Rowan G, Finnerty S (1997) Registration of ‘Benning’ soybean. Crop Sci 37:1982
Boyer JS (1982) Plant productivity and environment. Science 218:443–448
Carpentieri-Pipolo V, Pipolo A, Abdel-Haleem H, Boerma HR, Sinclair T (2011) Identification of QTLs associated with limited leaf hydraulic conductance in soybean. Euphytica. doi:10.1007/s10681-011-0535-6
Carrow R (1996) Drought avoidance characteristics of diverse tall fescue cultivars. Crop Sci 36:371–377
Carter TE Jr., De Souza PI, Purcell LC (1999) Recent advances in breeding for drought and aluminum resistance in soybean. In: Kauffman H (ed) Proc. World Soybean Conf. VI Chicago, IL. 4–7 Aug 1999. Superior Print., Champaign, IL, pp 106–125
Carter TE Jr, Nelson RL, Sneller C, Cui Z (2004) Genetic diversity in soybean. In: Boerma HR, Specht JE (eds) Soybean monograph, 3rd edn. American Society of Agronomy, Madison, pp 303–416
Charlson D, Bhatnagar S, King C, Ray J, Sneller C, Carter T, Purcell L (2009) Polygenic inheritance of canopy wilting in soybean [Glycine max; (L.) Merr.]. Theor Appl Genet 119(4):587–594
Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963
Csanadi G, Vollmann J, Stift G, Lelley T (2001) Seed quality QTL identified in a molecular map of early maturing soybean. Theor Appl Genet 103:912–919
Desclaux D, Roumet P (1996) Impact of drought stress on the phenology of two soybean (Glycine max L. Merr) cultivars. Field Crops Res 46:61–70
Diwan N, Cregan PB (1997) Automated sizing of fluorescent-labeled simple sequence repeat (SSR) markers to assay genetic variation in soybean. Theor Appl Genet 95:723–733
Du W, Wang M, Fu S, Yu D (2009a) Mapping QTL for seed yield and drought susceptibility index in soybean (Glycine max L.) across different environments. J Genet Genomics 36:721–731
Du W, Yu D, Fu S (2009b) Detection of quantitative trait loci for yield and drought tolerance traits in soybean using a recombinant inbred line population. J Integr Plant Biol 51:868–878
Fasoula VAH, Boerma DK (2004) Validation and designation of quantitative trait loci for seed protein, seed oil, and seed weight from two soybean populations. Crop Sci 44:1218
Fehr WR, Cavlness CE, Burmood LT, Penninglon IS (1971) Stage of development descriptions for soybeans, Glycine max (L.) Merrill. Crop Sci 11:929–931
Fletcher AL, Sinclair TR, Allen LH Jr (2007) Transpiration responses to vapor pressure deficit in well watered ‘slow-wilting’ and commercial soybean. Environ Exp Bot 61:145–151
Gizlice Z, Carter TE, Burton JW (1994) Genetic base for North-American public soybean cultivars released between 1947 and 1988. Crop Sci 34:1143–1151
Gutierrez-Gonzalez JJ, Guttikonda SK, Tran LSP, Aldrich DL, Zhong R, Yu O, Nguyen HT, Sleper DA (2010) Differential expression of isoflavone biosynthetic genes in soybean during water deficits. Plant Cell Phys 51:936–948
Hoeck JA, Fehr WR, Shoemaker RC, Welke GA, Johnson SL, Cianzio SR (2003) Molecular marker analysis of seed size in soybean. Crop Sci 43:68–74
Holland JB, Nyquist WE, Cervantes-Martinez CT (2003) Estimating and interpreting heritability for plant breeding: an update. Plant Breed Rev 22:9–111
Hudak C, Patterson R (1995) Vegetative growth analysis of a drought-resistant soybean plant introduction. Crop Sci 35:464–471
Hyten DL, Pantalone VR, Saxton AM, Schmidt ME, Sams CE (2004) Molecular mapping and identification of soybean fatty acid modifier quantitative trait loci. J Am Chem Soc 81:1115–1118
Jansen RC, Stam P (1994) High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136:1447
Jones MM, Turner NC, Osmond CB (1981) Mechanisms of drought resistance. In: Paleg LG, Aspinall D (eds) The physiology and biochemistry of drought resistance in plants, 1st edn. Academic Press, New York, pp 15–37
Kabelka EA, Diers BW, Fehr WR, LeRoy AR, Baianu IC, You T, Neece DJ, Nelson RL (2004) Putative alleles for increased yield from soybean plant introductions. Crop Sci 44:784–791
Kao CH, Zeng ZB, Teasdale RD (1999) Multiple interval mapping for quantitative trait loci. Genetics 152:1203
King CA, Purcell LC, Brye KR (2009) Differential wilting among soybean genotypes in response to water deficit. Crop Sci 49:290–298
Lebreton C, Lazi-Jani V, Steed A, Peki S, Quarrie S (1995) Identification of QTL for drought responses in maize and their use in testing causal relationships between traits. J Exp Bot 46:853
Lee SH, Bailey MA, Mian MAR, Carter TE, Shipe ER, Ashley DA, Parrott WA, Hussey RS, Boerma HR (1996) RFLP loci associated with soybean seed protein and oil content across populations and locations. Theor Appl Genet 93:649–657
Lee GJ, Boerma HR, Villagarcia MR, Zhou X, Carter TE, Li Z, Gibbs MO (2004) A major QTL conditioning salt tolerance in S-100 soybean and descendent cultivars. Theor Appl Genet 109:1610–1619
Li ZL, Wilson RF, Rayford WE, Boerma HR (2002) Molecular mapping genes conditioning reduced palmitic acid content in N87-2122-4 soybean. Crop Sci 42:373–378
Liu FL, Andersen MN, Jensen CR (2003) Loss of pod set caused by drought stress is associated with water status and ABA content of reproductive structures in soybean. Funct Plant Biol 30:271–280
Maughan PJ, Maroof MAS, Buss GR (1996) Molecular-marker analysis of seed weight: genomic locations, gene action, and evidence for orthologous evolution among three legume species. Theor Appl Genet 93:574–579
Meer JM, Manly KF, Cudmore RHJ (2002) User manual for map manager QTX. Roswell Park Cancer Institute, Buffalo
Mian MAR, Bailey MA, Ashley DA, Wells R, Carter TE, Parrott WA, Boerma HR (1996) Molecular markers associated with water use efficiency and leaf ash in soybean. Crop Sci 36:1252–1257
Mian MAR, Ashley DA, Boerma HR (1998) An additional QTL for water use efficiency in soybean. Crop Sci 38(2):390–393
Nyquist WE, Baker R (1991) Estimation of heritability and prediction of selection response in plant populations. Crit Rev Plant Sci 10:235–322
Orf JH, Chase K, Adler FR, Mansur LM, Lark KG (1999a) Genetics of soybean agronomic traits: II. Interactions between yield quantitative trait loci in soybean. Crop Sci 39:1652–1657
Orf JH, Chase K, Jarvik T, Mansur LM, Cregan PB, Adler FR, Lark KG (1999b) Genetics of soybean agronomic traits: I. Comparison of three related recombinant inbred populations. Crop Sci 39:1642–1651
Pantalone VR, Burton JW, Carter TE (1996a) Soybean fibrous root heritability and genotypic correlations with agronomic and seed quality traits. Crop Sci 36:1120–1125
Pantalone VR, Rebetzke GJ, Burton JW, Carter TE (1996b) Phenotypic evaluation of root traits in soybean and applicability to plant breeding. Crop Sci 36:456–459
Panthee DR, Pantalone VR, West DR, Saxton AM, Sams CE (2005) Quantitative trait loci for seed protein and oil concentration, and seed size in soybean. Crop Sci 45:2015–2022
Reyna N, Sneller CH (2001) Evaluation of marker-assisted introgression of yield QTL alleles into adapted soybean. Crop Sci 41:1317–1321
Ries LL, Purcell LC, Carter TE, Edwards JT, King CA (2012) Physiological traits contributing to differential canopy wilting in soybean under drought. Crop Sci 52:272–281
Sadok W, Sinclair TR (2009) Genetic variability of transpiration response to vapor pressure deficit among soybean (Glycine max [L.] Merr.) genotypes selected from a recombinant inbred line population. Field Crops Res 113:156–160
Sadok W, Sinclair TR (2010a) Genetic variability of transpiration response of soybean [Glycine max (L.) Mem] shoots to leaf hydraulic conductance inhibitor AgNO3. Crop Sci 50:1423–1430
Sadok W, Sinclair TR (2010b) Transpiration response of ‘slow-wilting’ and commercial soybean (Glycine max (L.) Merr.) genotypes to three aquaporin inhibitors. J Exp Bot 61:821–829
Sinclair TR, Zwieniecki MA, Holbrook NM (2008) Low leaf hydraulic conductance associated with drought tolerance in soybean. Physiol Plant 132:446–451
Sloane R, Patterson R, Carter T Jr (1990) Field drought tolerance of a soybean plant introduction. Crop Sci 30:118–123
Sneller CH, Dombek D (1997) Use of irrigation in selection for soybean yield potential under drought. Crop Sci 37:1141–1147
Song QJ, Marek LF, Shoemaker RC, Lark KG, Concibido VC, Delannay X, Specht JE, Cregan PB (2004) A new integrated genetic linkage map of the soybean. Theor Appl Genet 109:122–128
Specht JE, Hume DJ, Kumudini SV (1999) Soybean yield potential—a genetic and physiological perspective. Crop Sci 39:1560–1570
Specht JE, Chase K, Macrander M, Graef GL, Chung J, Markwell JP, Germann M, Orf JH, Lark KG (2001) Soybean response to water: a QTL analysis of drought tolerance. Crop Sci 41:493–509
Statistical Analysis System Institute (2001) SAS user’s guide: statistics. SAS Inst, Cary
Steel RGD, Torrie JH (1980) Principles and procedures of statistics: a biometrical approach, 2nd edn. McGraw-Hill, New York
Tanaka Y, Fujii K, Shiraiwa T (2010) Variability of leaf morphology and stomatal conductance in soybean [(L.) Merr.] cultivars. Crop Sci 50:2525–2532. doi:10.2135/cropsci2010.02.0058
Tuyen D, Lal S, Xu D (2010) Identification of a major QTL allele from wild soybean (Glycine soja; Sieb.; Zucc.) for increasing alkaline salt tolerance in soybean. Theor Appl Genet 121:229–236
Villagarcia MR, Carter TE Jr, Rufty TW, Niewoehner AS, Jennette MW, Arrellano C (2001) Genotypic rankings for aluminum tolerance of soybean roots grown in hydroponics and sand culture. Crop Sci 41:1499–1507
Wang S, Basten C, Zeng Z (2007) Windows QTL Cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh, NC
Yuan J, Njiti VN, Meksem K, Iqbal MJ, Triwitayakorn K, Kassem MA, Davis GT, Schmidt ME, Lightfoot DA (2002) Quantitative trait loci in two soybean recombinant inbred line populations segregating for yield and disease resistance. Crop Sci 42:271–277
Zeng ZB, Kao CH, Basten CJ (1999) Estimating the genetic architecture of quantitative traits. Genet Res 74:279–289
Acknowledgments
This research was supported by funds allocated to the Georgia Agricultural Experiment Stations and grants from the United Soybean Board. Appreciation is extended to Jonathan McCoy for technical assistance at the Stuttgart location, AR.
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Communicated by H. T. Nguyen.
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Abdel-Haleem, H., Carter, T.E., Purcell, L.C. et al. Mapping of quantitative trait loci for canopy-wilting trait in soybean (Glycine max L. Merr). Theor Appl Genet 125, 837–846 (2012). https://doi.org/10.1007/s00122-012-1876-9
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DOI: https://doi.org/10.1007/s00122-012-1876-9