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Mapping of QTL associated with chilling tolerance during reproductive growth in soybean

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Abstract

Low temperatures in summer bring about drastic reduction in seed yield of soybean [Glycine max (L.) Merr.]. To identify quantitative trait loci (QTL) associated with chilling tolerance during the reproductive growth in soybean, a recombinant inbred line (RIL) population consisting of 104 F6-derived lines was created from a cross between two cultivars, chilling-tolerant Hayahikari and chilling-sensitive Toyomusume. The RIL were genotyped with 181 molecular and phenotypic markers and were scored with regard to chilling tolerance, which was evaluated by comparison of seed-yielding abilities in two artificial climatic environments at chilling and usual temperatures. Three QTL were detected for chilling tolerance in seed-yielding ability. Two of them, qCTTSW1 and qCTTSW2, were mapped near QTL for flowering time, and the latter had an epistatic interaction with a marker locus located near another QTL for flowering time, where no significant QTL for chilling tolerance was detected. The analysis of an F2 population derived from the cross between Hayahikari and an RIL of the Hayahikari genotype at all QTL for flowering time confirmed the effect of the third QTL, qCTTSW3, on chilling tolerance and suggested that qCTTSW1 was basically independent of the QTL for flowering time. The findings and QTL found in this study may provide useful information for marker-assisted selection (MAS) and further genetic studies on soybean chilling tolerance.

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References

  • Abe J, Xu DH, Miyano A, Komatsu K, Kanazawa A, Shimamoto Y (2003) Photoperiod-insensitive Japanese soybean landraces differ at two maturity loci. Crop Sci 43:1300–1304

    Article  Google Scholar 

  • Andaya VC, Mackill DJ (2003) QTLs conferring cold tolerance at the booting stage of rice using recombinant inbred lines from a japonica × indica cross. Theor Appl Genet 106:1084–1090

    PubMed  CAS  Google Scholar 

  • Basten CJ, Weir BS, Zeng Z-B (2001) QTL Cartographer version 1.15. Department of Statistics, North Carolina State University, Raleigh

  • Beavis WD, Smith OS, Grant D, Fincher R (1994) Identification of quantitative trait loci using a small sample of topcrossed and F4 progeny from maize. Crop Sci 34:882–896

    Article  Google Scholar 

  • Bernard RL (1971) Two major genes for time of flowering in soybeans. Crop Sci 11:242–244

    Article  Google Scholar 

  • Buzzell RI (1971) Inheritance of a soybean flowering response to fluorescent-daylength conditions. Can J Cytol 13:703–707

    Google Scholar 

  • Buzzell RI, Voldeng HD (1980) Inheritance of insensitivity to long daylength. Soybean Genet Newsl 7:26–29

    Google Scholar 

  • Churchill G, Doerge R (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963–971

    PubMed  CAS  Google Scholar 

  • Cober ER, Tanner JW, Voldeng HD (1996) Genetic control of photoperiod response in early-maturing, near-isogenic soybean lines. Crop Sci 36:601–605

    Article  Google Scholar 

  • Cregan PB, Jarvik T, Bush AL, Shoemaker RC, Lark KG, Kahler AL, Kaya N, Van Toai TT, Lohnaes DG, Chung T, Specht JE (1999) An integrated genetic linkage map of the soybean genome. Crop Sci 39:1464–1490

    Article  CAS  Google Scholar 

  • Echt CS, May-Marquardt P, Hseih M, Zahorchak R (1996) Characterization of microsatellite markers in eastern white pine. Genome 39:1102–1108

    Article  PubMed  CAS  Google Scholar 

  • Edwards K, Johnstone C, Thompson C (1991) A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucleic Acids Res 19:1349

    Article  PubMed  CAS  Google Scholar 

  • Falconer DS (1976) Introduction to quantitative genetics. Longman Group, London, pp 365

    Google Scholar 

  • Funatsuki H, Kurosaki H, Murakami T, Matsuba S, Kawaguchi K, Yumoto S, Sato Y (2003) Deficiency of a cytosolic ascorbate peroxidase associated with chilling tolerance in soybean. Theor Appl Genet 106:494–502

    PubMed  CAS  Google Scholar 

  • Funatsuki H, Matsuba S, Kawaguchi K, Murakami T, Sato Y (2004) Methods for evaluation of soybean chilling tolerance at the reproductive stage under artificial climatic conditions. Plant Breed 123:558–563

    Article  Google Scholar 

  • Harada K, Xia ZJ (2004) Soybean genomics: efforts to reveal the complex genome. Breed Sci 54:215–224

    Article  CAS  Google Scholar 

  • Kurosaki H, Yumoto S (2003) Effects of low temperature and shading during flowering on the yield components in soybeans. Plant Prod Sci 6:17–23

    Article  Google Scholar 

  • Kurosaki H, Yumoto S, Matsukawa I (2004) Correlation of cold-weather tolerance with pubescence color and flowering time in yellow hilum soybeans in Hokkaido. Breed Sci 54:303–312

    Article  Google Scholar 

  • Manly KF, Cudmore Jr RH, Meer JM (2001) Map Manager QTX, cross-platform software for genetic mapping. Mamm Genome 12:930–932

    Article  PubMed  CAS  Google Scholar 

  • Molnar SJ, Rai S, Charette M, Cober ER (2003) Simple sequence repeat (SSR) markers linked to E1, E3, E4, and E7 maturity genes in soybean. Genome 46:1024–1036

    Article  PubMed  CAS  Google Scholar 

  • Morrison MJ, Voldeng HD, Guillemette RJD (1994) Soybean pubescence color influences seed yield in cool-season climates. Agronomy J 86:796–799

    Article  Google Scholar 

  • Morrison MJ, Voldeng HD, Guillemette RJD, Cober ER (1997) Yield of cool-season soybean lines differing in pubescence color and density. Agronomy J 89:218–22

    Article  Google Scholar 

  • Raper CD Jr, Kramer PJ (1987) Stress physiology. In: Wilcox JR (ed) Soybeans: improvement, production, and uses, 2nd edn. American Soc Agronomy, Inc. Crop Sci Soc America, Inc. Soil Sci Soc America Inc. Publishers, Madison, pp 589–642

    Google Scholar 

  • Ronnberg-Wastljung AC, Glynn C, Weih M (2005) QTL analyses of drought tolerance and growth for a Salix dasyclados × Salix viminalis hybrid in contrasting water regimes. Theor Appl Genet 110:537–549

    Article  PubMed  CAS  Google Scholar 

  • Saindon G, Beversdorf WD, Voldeng HD (1989a) Adjustment of the soybean phenology using the E4 locus. Crop Sci 29:1361–1365

    Article  Google Scholar 

  • Saindon G, Voldeng HD, Beversdorf WD, Buzzel RI (1989b) Genetic control of long day length response in soybean. Crop Sci 29:1436–1439

    Article  Google Scholar 

  • Saindon G, Voldeng HD, Beversdorf WD (1990) Adjusting the phenology of determinate segregants grown at high-latitude. Crop Sci 30:516–521

    Article  Google Scholar 

  • Saito M, Yamamoto T, Goto K, Hashimoto K (1970) The influence of cool temperature before and after anthesis, on pod-setting and nutrients in soybean plants. Proc Crop Sci Soc Jpn 39:511–519

    Google Scholar 

  • Saito K, Miura K, Nagano K, Hayano-Saito Y, Araki H, Kato A (2001) Identification of two closely linked quantitative trait loci for cold tolerance on chromosome 4 of rice and their association with anther length. Theor Appl Genet 103:862–868

    Article  CAS  Google Scholar 

  • Saito K, Hayano-Saito Y, Maruyama-Funatsuki W, Sato Y, Kato A (2004) A Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice. Theor Appl Genet 109:515–522

    Article  PubMed  CAS  Google Scholar 

  • Sanbuichi T (1979) Studies on cool weather tolerance in soybean breeding (in Japanese with English summary). Rep Hokkaido Prefect Agric Exp Stn 28:1–57

    Google Scholar 

  • SAS Institute (1996) SAS/STAT user’s guide, vols 1 and 2, version 6, 4th edn. Cary

  • Satake T, Nishiyama I, Ito N, Hayase H (1969) Male sterility caused by cooling treatment at the meiotic stage in rice plants. I. Methods of growing rice plants and inducing sterility in the phytotron. Proc Crop Sci Soc Jpn 38:603–609

    Google Scholar 

  • Song QJ, Marek LF, Shoemaker RC, Lark KG, Concibido VC, Delannay X, Specht JE, Cregan PB (2004) A new integrated genetic linkage map of the soybean. Theor Appl Genet 109:122–128

    Article  PubMed  CAS  Google Scholar 

  • Takahashi R, Asanuma S (1996) Association of T gene with chilling tolerance in soybean. Crop Sci 36:559–562

    Article  Google Scholar 

  • Takahashi R, Benitez ER, Funatsuki H, Ohnishi S (2005) Soybean maturity and pubescence color genes improve chilling tolerance at high latitude regions. Crop Sci 45:1387–1393

    Google Scholar 

  • Takeuchi Y, Hayasaka H, Chiba B, Tanaka I, Shimano T, Yamagishi M, Nagano K, Sasaki T, Yano M (2001) Mapping quantitative trait loci controlling cool-temperature tolerance at booting stage in temperate japonica rice. Breed Sci 51:191–197

    Article  CAS  Google Scholar 

  • Toda K, Yang D, Yamanaka N, Watanabe S, Harada K, Takahashi R (2002) A single-base deletion in soybean flavonoid 3′-hydroxylase gene is associated with gray pubescence color. Plant Mol Biol 50:187–196

    Article  PubMed  CAS  Google Scholar 

  • Wang D, Shi J, Carlson SR, Cregan PB, Ward RW, Diers BW (2003) A low-cost, high-throughput polyacrylamide gel electrophoresis system for genotyping with microsatellite DNA markers. Crop Sci 43:1828–1832

    Article  CAS  Google Scholar 

  • Watanabe S, Tajuddin T, Yamanaka N, Hayashi M, Harada K (2004) Analysis of QTLs for reproductive development and seed quality traits in soybean using recombinant inbred lines. Breed Sci 54:399–408

    Article  CAS  Google Scholar 

  • Yamanaka N, Ninomiya S, Hoshi M, Tsubokura Y, Yano M, Nagamura Y, Sasaki T, Harada K (2001) An informative linkage map of soybean reveals QTLs for flowering time, leaflet morphology and regions of segregation distortion. DNA Res 8:61–72

    Article  PubMed  CAS  Google Scholar 

  • Yamanaka N, Watanabe S, Toda K, Hayashi M, Fuchigami H, Takahashi R, Harada K (2005) Fine mapping of the FT1 locus for soybean flowering time using a residual heterozygous line derived from a recombinant inbred line. Theor Appl Genet 110:634–639

    Article  PubMed  CAS  Google Scholar 

  • Yumoto S, Tsuchiya T (1991) Response to low temperature and its genotypic variations in soybean cultivars (in Japanese). Rep Hokkaido Branch Jpn Soc Breed Crop Sci Soc Jpn 31:60

    Google Scholar 

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Acknowledgements

The authors wish to thank Drs. S. Shirai, S. Ohnishi and the staff of the Soybean Breeding Laboratory, Tokachi Agric. Exp. Stn. and Dr. H. Kurosaki, Kitami Agric. Exp. Stn. for their valuable suggestions and helpful discussion. The technical assistance of R. Narita, S. Sudo, K. Wada and R. Sugisawa is gratefully acknowledged. We are also grateful to Dr. H. Yamauchi (NARCH) for his encouragement. This work was supported by the Rice Genome Research Program (Section: Development of DNA Marker-aided Selection Technology for Plants and Animals) of the Ministry of Agriculture, Forestry and Fishery of Japan.

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Correspondence to H. Funatsuki.

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Communicated by R. Bernardo

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Funatsuki, H., Kawaguchi, K., Matsuba, S. et al. Mapping of QTL associated with chilling tolerance during reproductive growth in soybean. Theor Appl Genet 111, 851–861 (2005). https://doi.org/10.1007/s00122-005-0007-2

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