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Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family

Theoretical and Applied Genetics volume 110, pages 742–753 (2005)Cite this article

Abstract

Arabidopsis thaliana provides a scientifically attractive and simple model for studying root growth and architecture and, subsequently, for discovering new genes involved in the control of these characters in plants. We have used the natural variation available in Arabidopsis accessions and mapped quantitative trait loci (QTLs) for primary root length (PRL), lateral root number (LRN) and density (LRD) and for total length of the lateral root system (LRL) in the Bay-0 × Shahdara population. Total phenotypic variation was very large, and despite the importance of the environmental component we were able to map 13 QTLs and one epistatic interaction between QTLs. Our results highlight the biological relevance and genetic control of lateral root density in this material. We were also able to show that variation in the extent of the lateral root system depends mainly on the growth of the existing lateral roots rather than in a change in LRN. Factors controlling lateral root growth seemed to have no major effect on primary root growth. Moreover, Shahdara QTL alleles always increased the length of the lateral roots, which may be taken as an adaptation to its very dry natural environment in Tadjikistan. A QTL for PRL was confirmed using a type of near-isogenic line called a heterogeneous inbred family (HIF), and this QTL is a candidate for further fine-mapping and cloning.

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Acknowledgements

The authors wish to thank Jean-Paul Saint-Drenant for his irreplaceable knowledge of the growth rooms, Malcolm Bennett for the nice Christmas gift of his review and Justin Borevitz and Todd Michael for their attentive reading of the manuscript.

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Author notes

  1. Olivier Loudet

    Present address: INRA, Station de Génétique et d‘Amélioration des Plantes, Centre de Versailles, 78 026, Versailles, France

Affiliations

  1. INRA, Unité de Nutrition Azotée des Plantes, Centre de Versailles, 78 026, Versailles, France

    Olivier Loudet, Virginie Gaudon & Françoise Daniel-Vedele

  2. INRA, Laboratoire de Biométrie, Centre de Jouy en Josas, 78 352, Jouy en Josas, France

    Alain Trubuil

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  1. Olivier Loudet
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  2. Virginie Gaudon
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  4. Françoise Daniel-Vedele
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Correspondence to Olivier Loudet.

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Communicated by L. Willmitzer

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Loudet, O., Gaudon, V., Trubuil, A. et al. Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family. Theor Appl Genet 110, 742–753 (2005). https://doi.org/10.1007/s00122-004-1900-9

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Keywords

  • Quantitative Trait Locus
  • Lateral Root
  • Recombinant Inbred Line
  • Primary Root
  • Quantitative Trait Locus Analysis