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The genetics of phytate and phosphate accumulation in seeds and leaves of Arabidopsis thaliana, using natural variation

Theoretical and Applied Genetics volume 106, pages 1234–1243 (2003)Cite this article

Abstract.

Phytate (myo-inositol-1,2,3,4,5,6-hexakisphosphate, InsP6) is the most abundant P-containing compound in plants, and an important anti-nutritional factor, due to its ability to complex essential micro-nutrients, e.g. iron and zinc. Analysis of natural variation for InsP6 and Pi accumulation in seeds and leaves for a large number of accessions of Arabidopsis thaliana, using a novel method for InsP6 detection, revealed a wide range of variation in InsP6 and Pi levels, varying from 7.0 mg to 23.1 mg of InsP6 per gram of seed. Quantitative trait locus (QTL) analysis of InsP6 and Pi levels in seeds and leaves, using an existing recombinant inbred line population, was performed in order to identify a gene(s) that is (are) involved in the regulation of InsP6 accumulation. Five genomic regions affecting the quantity of the InsP6 and Pi in seeds and leaves were identified. One of them, located on top of chromosome 3, affects all four traits. This QTL appears as the major locus responsible for the observed variation in InsP6 and Pi contents in the Ler/Cvi RIL population; the Ler allele decreases the content of both InsP6 and Pi in seeds and in leaves. The InsP6/Pi locus was further fine-mapped to a 99-kb region, containing 13 open reading frames. The maternal inheritance of the QTL and the positive correlation between InsP6 and total Pi levels both in seeds and in leaves indicate that the difference in InsP6 level between Ler and Cvi is likely to be caused by a difference in transport rather than by an alteration in the biosynthesis. Therefore, we consider the vacuolar membrane ATPase subunit G, located in the region of interest, as the most likely candidate gene for InsP6/Pi.

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Acknowledgements.

The authors thank Diaan Jamar for technical assistance in the InsP6 and Pi analyses. K.Y. received a grant from the China Scholarship Council. L.B. was supported by the Netherlands Organization for Scientific Research and by the European Union (E.U.) program NATURAL (contract QLG2-CT-2001-01097).

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Author notes

  1. K. Yuan

    Present address: Shandong Institute of Pomology, Taian 271000, Shandong, P.R. China,

Affiliations

  1. Laboratory of Genetics, Wageningen University, Arboretumaan 4, 6703 BD Wageningen, The Netherlands

    L. Bentsink & M. Koornneef

  2. Graduate School of Experimental Plant Science, Wageningen University, Arboretumlaan 4, 6703 BD Wageningen, The Netherlands

    L. Bentsink, M. Koornneef & D. Vreugdenhil

  3. Laboratory of Plant Physiology, Department of Plant Sciences, Wageningen University, Arboretumlaan 4, 6703 BD Wageningen, The Netherlands

    K. Yuan & D. Vreugdenhil

Authors
  1. L. Bentsink
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  2. K. Yuan
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  3. M. Koornneef
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  4. D. Vreugdenhil
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Corresponding author

Correspondence to D. Vreugdenhil.

Additional information

Communicated by L. Willmitzer

L. Bentsink and K. Yuan contributed equally to the work

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Bentsink, L., Yuan, K., Koornneef, M. et al. The genetics of phytate and phosphate accumulation in seeds and leaves of Arabidopsis thaliana, using natural variation. Theor Appl Genet 106, 1234–1243 (2003). https://doi.org/10.1007/s00122-002-1177-9

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  • DOI: https://doi.org/10.1007/s00122-002-1177-9

Keywords.

  • Arabidopsis
  • QTL analysis
  • Phytate
  • Phosphate
  • Natural variation