Skip to main content
Log in

Phylogeographic history and taxonomy of some afro-alpine grasses assessed based on AFLPs and morphometry: Deschampsia cespitosa, D. angusta and Koeleria capensis

  • Original Paper
  • Published:
Alpine Botany Aims and scope Submit manuscript

Abstract

Phylogeographic studies in the high mountains of Africa are hampered by the limited material available, resulting in insufficient knowledge of taxonomic variation within and among closely related species. Here, we address genetic and morphological variation in three grass species, of which one (Deschampsia angusta) has been reported as narrowly endemic and vulnerable whereas Deschampsia cespitosa and Koeleria capensis are widely distributed also outside the afro-alpine region. We used amplified fragment length polymorphisms (AFLPs) to assess genetic structuring and diversity in material collected during recent field expeditions and included additional herbarium material in morphometric analyses. The plants identified as the endemic D. angusta were genetically very similar to those identified as D. cespitosa from the same mountain (Mt Ruwenzori), forming a single coherent genetic group in STRUCTURE analysis. The plants identified as D. angusta seem to represent extremes of continuous gradients of morphological variation within a single, variable species, D. cespitosa. We found that the afro-alpine material of Deschampsia consists of three genetically very distinct groups corresponding to the three mountains investigated, suggesting persistence in isolated afro-alpine refugia during one or more glacial cycles. In contrast, we found no clear genetic structure in K. capensis. This species harbored very little genetic diversity in all six mountain areas examined, and little genetic rarity except in the Ethiopian Simen Mts. This pattern may be explained by recent colonization of the afro-alpine region from a single source population or possibly by extensive recent gene flow combined with bottlenecks. We found, however, some differentiation between different K. capensis populations from Mt Kilimanjaro, corresponding to two described varieties. This study demonstrates the need for further taxonomic exploration of the enigmatic flora of the isolated afro-alpine ‘sky islands’ and highlights that different species may have conspicuously different phylogeographic histories.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

Explore related subjects

Discover the latest articles and news from researchers in related subjects, suggested using machine learning.

References

  • Assefa A, Ehrich D, Taberlet P, Nemomissa S, Brochmann C (2007) Pleistocene colonization of afro-alpine ‘sky islands’ by the arctic-alpine Arabis alpina. Heredity 99:33–142

    Article  Google Scholar 

  • Ayele TB, Gailing O, Umer M, Finkeldey R (2009) Chloroplast DNA haplotype diversity and postglacial recolonization of Hagenia abyssinica (Bruce) J.F. Gmel. in Ethiopia. Plant Syst Evol 280:175–185

    Article  CAS  Google Scholar 

  • Bonin A, Bellemain E, Eidesen PB, Pompanon F, Brochmann C, Taberlet P (2004) How to track and assess genotyping errors in population genetics studies. Mol Ecol 13:3261–3273

    Article  PubMed  CAS  Google Scholar 

  • Bonnefille R (1995) A reassessment of the Plio-Pleistocene pollen record of East Africa. In: Vrba ES, Denton GH, Partridge TC, Burckle LH (eds) Paleoclimate and evolution with emphasis on human origins. Yale University Press, New Haven, pp 299–310

    Google Scholar 

  • Chiapella JO (2007) A molecular phylogenetic study of Deschampsia (Poaceae: Aveneae) inferred from nuclear ITS and plastid trnL sequence data: support for the recognition of Avenella and Vahlodea. Taxon 56:55–64

    Google Scholar 

  • Chiapella JO, DeBoer VL, Amico GC, Kuhl JC (2011) A morphological and molecular study in the Deschampsia cespitosa complex (Poaceae; Poeae; Airinae) in northern North America. Am J Bot 98:1366–1380

    Article  PubMed  Google Scholar 

  • Clayton WD (1970) Gramineae I. In: Milne-Redhead E, Polhill RM (eds) Flora of tropical East Africa. Crown Agents, London, pp 1–176

    Google Scholar 

  • Clayton WD, Vorontsova MS, Harman KT, Williamson H (2006 onwards) GrassBase. The Online World Grass Flora. http://www.kew.org/data/grasses-db.html. Accessed 28 Nov 2012

  • deMenocal PB (1995) Plio-Pleistocene African climate. Science 270:53–59

    Article  PubMed  CAS  Google Scholar 

  • Ehrich D (2006) AFLPdat: a collection of R functions for convenient handling of AFLP data. Mol Ecol Notes 6:603–604

    Article  Google Scholar 

  • Ehrich D, Gaudeul M, Assefa A, Koch MA, Mummenhoff K, Nemomissa S, Brochmann C (2007) Genetic consequences of Pleistocene range shifts: contrast between the Arctic, the Alps and the East African mountains. Mol Ecol 16:2542–2559

    Article  PubMed  CAS  Google Scholar 

  • Elven R (2011) Annotated Checklist of the Panarctic Flora (PAF). Vascular plants. http://nhm2.uio.no/paf/. Accessed 5 Dec 2012

  • Engler A (1892) Uber die Hochgebirgsflora des tropischen Afrika. Verlag der Konigl. Akademie der Wissenschaften, Berlin

    Google Scholar 

  • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611–2620

    Article  PubMed  CAS  Google Scholar 

  • Excoffier L, Lischer HEL (2010) Arlequin suite ver. 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564–567

    Article  PubMed  Google Scholar 

  • Falush D, Stephens M, Pritchard J (2007) Inference of population structure using multilocus genotype data: dominant markers and null allele. Mol Ecol Notes 7:574–578

    Article  PubMed  CAS  Google Scholar 

  • Flenley J (1979) The equatorial rain forest: a geological history. Butterworth, London

    Google Scholar 

  • Fries RE, Fries TCE (1922) Die Riesen-Lobelien Afrikas. Sven Bot Tidskr 16:383–416

    Google Scholar 

  • Gaudeul M, Taberlet P, Till-Bottraud I (2000) Genetic diversity in an endangered alpine plant, Eryngium alpinum L. (Apiaceae), inferred from amplified fragment length polymorphism markers. Mol Ecol 9:1625–1637

    Article  PubMed  CAS  Google Scholar 

  • Geleta M, Bryngelsson T, Bekele E, Dagne K (2008) Assessment of genetic diversity of Guizotia abyssinica (L.f.) Cass. (Asteraceae) from Ethiopia using amplified fragment length polymormophism. Plant Genet Resour 6:41–51

    Article  CAS  Google Scholar 

  • Gizaw A, Kebede M, Nemomissa S, Ehrich D, Bekele B, Mirré V, Popp M, Brochmann C (2013) Phylogeography of the heathers Erica arborea and E. trimera in the afro-alpine ‘sky islands’ inferred from AFLPs and plastid DNA sequences. Flora 208:453–463

    Article  Google Scholar 

  • Gottelli D, Marino J, Sillero-Zubiri C, Funk SM (2004) The effect of the last glacial age on speciation and population genetic structure of the endangered Ethiopian wolf (Canis simensis). Mol Ecol 13:2275–2286

    Article  PubMed  CAS  Google Scholar 

  • Griffiths CJ (1993) The geological evolution of East Africa. In: Lovett JC, Wasser SK (eds) Biogeography and ecology of the rain forests of Eastern Africa. Cambridge University Press, Cambridge, pp 19–23

    Google Scholar 

  • Hedberg O (1951) Vegetation belts of the East African mountains. Sven Bot Tidskr 45:140–202

    Google Scholar 

  • Hedberg O (1957) Afroalpine vascular plants. A taxonomic revision. Symb Bot Ups 15:1–411

    Google Scholar 

  • Hedberg O (1969) Evolution and speciation in a tropical high mountain flora. Bot J Linn Soc 1:135–148

    Article  Google Scholar 

  • Hedberg O (1970) Evolution of the afroalpine flora. Biotropica 2:16–23

    Article  Google Scholar 

  • Hedberg O (1986) Origin of the afroalpine flora. In: Vuilleumier F, Monastero M (eds) High altitude tropical biogeography. Oxford University Press, New York, pp 443–468

    Google Scholar 

  • Hedberg I, Hedberg O (1977) Chromosome numbers of afroalpine and afromontane angiosperms. Bot Not 130:1–24

    Google Scholar 

  • Hedberg I, Hedberg O (1979) Tropical-alpine life-forms of vascular plants. Oikos 33:297–307

    Article  Google Scholar 

  • Kadu CA, Schueler S, Konrad H, Muluvi GM, Eyog-Matig O, Muchugi A, Williams VL, Ramamonjisoa L, Kapinga C, Foahom B, Katsvanga C, Hafashimana D, Obama C, Geburek T (2011) Phylogeography of the Afromontane Prunus africana reveals a former migration corridor between East and West African highlands. Mol Ecol 20:165–178

    Article  PubMed  CAS  Google Scholar 

  • Kadu CA, Konrad H, Schueler S, Muluvi GM, Eyog-Matig O, Muchugi A, Williams VL, Ramamonjisoa L, Kapinga C, Foahom B, Katsvanga C, Hafashimana D, Obama C, Geburek T (2013) Divergent pattern of nuclear genetic diversity across the range of the Afromontane Prunus africana mirrors variable climate of African highlands. Ann Bot 111:47–60

    Article  PubMed  Google Scholar 

  • Kebede M, Ehrich D, Taberlet P, Nemomissa S, Brochmann C (2007) Phylogeography and conservation genetics of a giant lobelia (Lobelia giberroa) in Ethiopian and Tropical East African mountains. Mol Ecol 16:1233–1243

    Article  PubMed  CAS  Google Scholar 

  • Koch MA, Kiefer C, Ehrich D, Vogel J, Brochmann C, Mummenhoff K (2006) Three times out of Asia Minor: the phylogeography of Arabis alpina L. (Brassicaceae). Mol Ecol 15:825–839

    Article  PubMed  CAS  Google Scholar 

  • Kosman E (2003) Nei’s gene diversity and the index of average differences are identical measures of diversity within populations. Plant Pathol 52:533–535

    Article  Google Scholar 

  • Magombo ZLK, Mbeiza Mutekanga N, Ndiritu GG (2004) Freshwater Biodiversity Assessment workshop (Uganda. Dec’ 2003), Deschampsia angusta. In: IUCN 2012. IUCN Red List of Threatened Species. Version 2012.2. http://www.iucnredlist.org Accessed 25 Nov 2012

  • Mohammed MU, Bonnefille R (1998) A late Holocene pollen record from a highland peak at Tamsaa, Bale Mountains, South Ethiopia. Global Planet Change 16–17:121–129

    Article  Google Scholar 

  • Moritz C (1994) Defining ‘evolutionary significant units’ for conservation. Trends Ecol Evol 9:373–375

    Article  PubMed  CAS  Google Scholar 

  • Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269–5273

    Article  PubMed  CAS  Google Scholar 

  • Nybom H (2004) Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol Ecol 13:1143–1155

    Article  PubMed  CAS  Google Scholar 

  • Pecinka A, Suchankova P, Lysak MA, Travnicek B, Dolezel J (2006) Nuclear DNA content variation among Central European Koeleria taxa. Ann Bot 98:117–122

    Article  PubMed  CAS  Google Scholar 

  • Phillips S (1995) Poaceae (Gramineae). In: Hedberg I, Edwards S (eds) Flora of Ethiopia and Eritrea, vol. 7. Addis Ababa: The National Herbarium, Addis Ababa University and Department of Systematic Botany, Uppsala University, Addis Abab and Uppsala, pp 33–38

  • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959

    PubMed  CAS  Google Scholar 

  • Richard A (1847–1851) Tentamen Florae Abyssinicae. Arthus Bertrand, Paris Reprinted by Uppsala University, 1982

  • Rohlf F (2000) NTSYS-PC. Numerical Taxonomy and Multivariate Analysis System. Version 2. 11a. Exeter Software, Setauket (NY)

  • Ryner MA, Bonnefille R, Holmgren K, Muzuka A (2006) Vegetation changes in Empakaai Crater, northern Tanzania, at 14 000–9 300 cal yr BP. Rev Palaeobot Palynol 140:163–174

    Article  Google Scholar 

  • Schönswetter P, Tribsch A (2005) Vicariance and dispersal in the alpine perennial Bupleurum stellatum L. (Apiaceae). Taxon 54:725–732

    Article  Google Scholar 

  • Van de Peer Y, De Wachter R (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10:569–570

    PubMed  Google Scholar 

  • Voje KL, Hemp C, Flagstad O, Saetre GP, Stenseth NC (2009) Climatic change as an engine for speciation in flightless Orthoptera species inhabiting African mountains. Mol Ecol 18:93–108

    PubMed  CAS  Google Scholar 

Download references

Acknowledgments

We thank the Tanzanian National Parks Authority (TANAPA), Uganda Wildlife Authority, Bale Mountains National Park and Simen Mountains National Park in Ethiopia, and National Museums of Kenya for permission to conduct field work. We are grateful to the staff at the following institutions for help with curation of our specimens: National Herbarium - Addis Ababa University (ETH), Natural History Museum - University of Oslo (O), the East African Herbarium - National Museum of Kenya (EAH), Makerere University Herbarium (MHU), Sokoine University of Agriculture (SUA) and National Herbarium of Tanzania (NHT); and to the editor and two anonymous reviewers for valuable suggestions to improve the paper. This study was funded by the Norwegian Programme for Development, Research and Higher Education (NUFU) project 2007/10058 (AFROALP-II - Afroalpine ‘sky islands’: genetic versus taxonomic biodiversity, climate change, and conservation) headed by S. Nemomissa and C. Brochmann.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Catherine A. Masao.

Additional information

S. Nemomissa and C. Brochmann share senior authorship.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOC 147 KB)

Supplementary material 2 (DOC 81 KB)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Masao, C.A., Gizaw, A., Piñeiro, R. et al. Phylogeographic history and taxonomy of some afro-alpine grasses assessed based on AFLPs and morphometry: Deschampsia cespitosa, D. angusta and Koeleria capensis . Alp Botany 123, 107–122 (2013). https://doi.org/10.1007/s00035-013-0119-2

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00035-013-0119-2

Keywords

Profiles

  1. Abel Gizaw