Abstract
Intraflagellar transport (IFT) is required for ciliogenesis by ferrying ciliary components using IFT complexes as cargo adaptors. IFT54 is a component of the IFT-B complex and is also associated with cytoplasmic microtubules (MTs). Loss of IFT54 impairs cilia assembly as well as cytoplasmic MT dynamics. The N-terminal calponin homology (CH) domain of IFT54 interacts with tubulins/MTs and has been proposed to transport tubulin during ciliogenesis, whereas the C-terminal coiled-coil (CC) domain binds IFT20. However, the precise function of these domains in vivo is not well understood. We showed that in Chlamydomonas, loss of IFT54 completely blocks ciliogenesis but does not affect spindle formation and proper cell cycle progression, even though IFT54 interacts with mitotic MTs. Interestingly, IFT54 lacking the CH domain allows proper flagellar assembly. The CH domain is required for the association of IFT54 with the axoneme but not with mitotic MTs, and also regulates the flagellar import of IFT54 but not IFT81 and IFT46. The C-terminal CC domain is essential for IFT54 to bind IFT20, and for its recruitment to the basal body and incorporation into IFT complexes. Complete loss of IFT54 or the CC domain destabilizes IFT20. ift54 mutant cells expressing the CC domain alone rescue the stability of IFT20 and form stunted flagella with accumulation of both IFT-A component IFT43 and IFT-B component IFT46, indicating that IFT54 also functions in IFT turn-around at the flagellar tip.
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Abbreviations
- CH domain:
-
Calponin homology domain
- CrIFT54:
-
Chlamydomonas IFT54
- CC domain:
-
Coiled-coil domain
- IFT:
-
Intraflagellar transport
- DIC:
-
Differential interference contrast microscopy
- Microtubules:
-
MTs
References
Rosenbaum JL, Witman GB (2002) Intraflagellar transport. Nat Rev Mol Cell Biol 3:813–825
Taschner, M, Lorentzen, E (2016) The intraflagellar transport machinery. Cold Spring Harb Perspect Biol 8
He M, Agbu S, Anderson KV (2016) Microtubule motors drive hedgehog signaling in primary Cilia. Trends Cell Biol
Lechtreck KF (2015) IFT-Cargo interactions and protein transport in Cilia. Trends Biochem Sci 40:765–778
Cole DG, Diener DR, Himelblau AL, Beech PL, Fuster JC, Rosenbaum JL (1998) Chlamydomonas kinesin-II-dependent intraflagellar transport (IFT): IFT particles contain proteins required for ciliary assembly in Caenorhabditis elegans sensory neurons. J Cell Biol 141:993–1008
Piperno G, Mead K (1997) Transport of a novel complex in the cytoplasmic matrix of Chlamydomonas flagella. Proc Natl Acad Sci USA 94:4457–4462
Behal RH, Miller MS, Qin H, Lucker BF, Jones A, Cole DG (2012) Subunit interactions and organization of the Chlamydomonas reinhardtii intraflagellar transport complex A proteins. J Biol Chem 287:11689–11703
Lucker BF, Miller MS, Dziedzic SA, Blackmarr PT, Cole DG (2010) Direct interactions of intraflagellar transport complex B proteins IFT88, IFT52, and IFT46. J Biol Chem 285:21508–21518
Taschner M, Weber K, Mourao A, Vetter M, Awasthi M, Stiegler M, Bhogaraju S, Lorentzen E (2016) Intraflagellar transport proteins 172, 80, 57, 54, 38, and 20 form a stable tubulin-binding IFT-B2 complex. EMBO J 35:773–790
Ling L, Goeddel DV (2000) MIP-T3, a novel protein linking tumor necrosis factor receptor-associated factor 3 to the microtubule network. J Biol Chem 275:23852–23860
Bizet AA, Becker-Heck A, Ryan R, Weber K, Filhol E, Krug P, Halbritter J, Delous M, Lasbennes MC, Linghu B et al (2015) Mutations in TRAF3IP1/IFT54 reveal a new role for IFT proteins in microtubule stabilization. Nat Commun 6:8666
Berbari NF, Kin NW, Sharma N, Michaud EJ, Kesterson RA, Yoder BK (2011) Mutations in Traf3ip1 reveal defects in ciliogenesis, embryonic development, and altered cell size regulation. Dev Biol 360:66–76
Li C, Inglis PN, Leitch CC, Efimenko E, Zaghloul NA, Mok CA, Davis EE, Bialas NJ, Healey MP, Heon E et al (2008) An essential role for DYF-11/MIP-T3 in assembling functional intraflagellar transport complexes. PLoS Genet 4:e1000044
Omori Y, Zhao C, Saras A, Mukhopadhyay S, Kim W, Furukawa T, Sengupta P, Veraksa A, Malicki J (2008) Elipsa is an early determinant of ciliogenesis that links the IFT particle to membrane-associated small GTPase Rab8. Nat Cell Biol 10:437–444
Berbari NF, O’Connor AK, Haycraft CJ, Yoder BK (2009) The primary cilium as a complex signaling center. Curr Biol 19:R526–R535
Kunitomo H, Iino Y (2008) Caenorhabditis elegans DYF-11, an orthologue of mammalian Traf3ip1/MIP-T3, is required for sensory cilia formation. Genes Cells 13:13–25
Wei Q, Xu Q, Zhang Y, Li Y, Zhang Q, Hu Z, Harris PC, Torres VE, Ling K, Hu J (2013) Transition fibre protein FBF1 is required for the ciliary entry of assembled intraflagellar transport complexes. Nat Commun 4:2750
Nachury MV, Loktev AV, Zhang Q, Westlake CJ, Peranen J, Merdes A, Slusarski DC, Scheller RH, Bazan JF, Sheffield VC et al (2007) A core complex of BBS proteins cooperates with the GTPase Rab8 to promote ciliary membrane biogenesis. Cell 129:1201–1213
Sager R, Granick S (1953) Nutritional studies with Chlamydomonas reinhardi. Ann N Y Acad Sci 56:831–838
Hu Z, Liang Y, He W, Pan J (2015) Cilia disassembly with two distinct phases of regulation. Cell Rep 10:1803–1810
Sizova I, Fuhrmann M, Hegemann P (2001) A Streptomyces rimosus aphVIII gene coding for a new type phosphotransferase provides stable antibiotic resistance to Chlamydomonas reinhardtii. Gene 277:221–229
Liang Y, Pan J (2013) Regulation of flagellar biogenesis by a calcium dependent protein kinase in Chlamydomonas reinhardtii. PLoS One 8:e69902
Meng D, Cao M, Oda T, Pan J (2014) The conserved ciliary protein Bug22 controls planar beating of Chlamydomonas flagella. J Cell Sci 127:281–287
Gonzalez-Ballester D, de Montaigu A, Galvan A, Fernandez E (2005) Restriction enzyme site-directed amplification PCR: a tool to identify regions flanking a marker DNA. Anal Biochem 340:330–335
Lechtreck KF, Luro S, Awata J, Witman GB (2009) HA-tagging of putative flagellar proteins in Chlamydomonas reinhardtii identifies a novel protein of intraflagellar transport complex B. Cell Motil Cytoskeleton 66:469–482
Craige B, Brown JM, Witman GB (2013) Isolation of Chlamydomonas flagella. Curr Protoc Cell Biol Chapter 3: Unit 3 41 41–49
Piao T, Luo M, Wang L, Guo Y, Li D, Li P, Snell WJ, Pan J (2009) A microtubule depolymerizing kinesin functions during both flagellar disassembly and flagellar assembly in Chlamydomonas. Proc Natl Acad Sci USA 106:4713–4718
Pan J, Snell WJ (2003) Kinesin II and regulated intraflagellar transport of Chlamydomonas aurora protein kinase. J Cell Sci 116:2179–2186
Craige B, Tsao CC, Diener DR, Hou Y, Lechtreck KF, Rosenbaum JL, Witman GB (2010) CEP290 tethers flagellar transition zone microtubules to the membrane and regulates flagellar protein content. J Cell Biol 190:927–940
Lucker BF, Behal RH, Qin H, Siron LC, Taggart WD, Rosenbaum JL, Cole DG (2005) Characterization of the intraflagellar transport complex B core: direct interaction of the IFT81 and IFT74/72 subunits. J Biol Chem 280:27688–27696
Brazelton WJ, Amundsen CD, Silflow CD, Lefebvre PA (2001) The bld1 mutation identifies the Chlamydomonas osm-6 homolog as a gene required for flagellar assembly. Curr Biol 11:1591–1594
Matsuura K, Lefebvre PA, Kamiya R, Hirono M (2002) Kinesin-II is not essential for mitosis and cell growth in Chlamydomonas. Cell Motil Cytoskeleton 52:195–201
Hou Y, Qin H, Follit JA, Pazour GJ, Rosenbaum JL, Witman GB (2007) Functional analysis of an individual IFT protein: IFT46 is required for transport of outer dynein arms into flagella. J Cell Biol 176:653–665
Brown JM, Cochran DA, Craige B, Kubo T, Witman GB (2015) Assembly of IFT trains at the ciliary base depends on IFT74. Curr Biol 25:1583–1593
Katoh Y, Terada M, Nishijima Y, Takei R, Nozaki S, Hamada H, Nakayama K (2016) Overall architecture of the intraflagellar transport (IFT)-B complex containing Cluap1/IFT38 as an essential component of the IFT-B peripheral subcomplex. J Biol Chem 291:10962–10975
Cavalier-Smith T (1974) Basal body and flagellar development during the vegetative cell cycle and the sexual cycle of Chlamydomonas reinhardii. J Cell Sci 16:529–556
Piasecki BP, LaVoie M, Tam LW, Lefebvre PA, Silflow CD (2008) The Uni2 phosphoprotein is a cell cycle regulated component of the basal body maturation pathway in Chlamydomonas reinhardtii. Mol Biol Cell 19:262–273
Delaval B, Bright A, Lawson ND, Doxsey S (2011) The cilia protein IFT88 is required for spindle orientation in mitosis. Nat Cell Biol 13:461–468
Follit JA, Tuft RA, Fogarty KE, Pazour GJ (2006) The intraflagellar transport protein IFT20 is associated with the Golgi complex and is required for cilia assembly. Mol Biol Cell 17:3781–3792
Deane JA, Cole DG, Seeley ES, Diener DR, Rosenbaum JL (2001) Localization of intraflagellar transport protein IFT52 identifies basal body transitional fibers as the docking site for IFT particles. Curr Biol 11:1586–1590
Iomini C, Tejada K, Mo W, Vaananen H, Piperno G (2004) Primary cilia of human endothelial cells disassemble under laminar shear stress. J Cell Biol 164:811–817
Wood CR, Wang Z, Diener D, Zones JM, Rosenbaum J, Umen JG (2012) IFT proteins accumulate during cell division and localize to the cleavage furrow in Chlamydomonas. PLoS One 7:e30729
Kim S, Zaghloul NA, Bubenshchikova E, Oh EC, Rankin S, Katsanis N, Obara T, Tsiokas L (2011) Nde1-mediated inhibition of ciliogenesis affects cell cycle re-entry. Nat Cell Biol 13:351–360
Li A, Saito M, Chuang JZ, Tseng YY, Dedesma C, Tomizawa K, Kaitsuka T, Sung CH (2011) Ciliary transition zone activation of phosphorylated Tctex-1 controls ciliary resorption, S-phase entry and fate of neural progenitors. Nat Cell Biol 13:402–411
Taschner M, Bhogaraju S, Lorentzen E (2012) Architecture and function of IFT complex proteins in ciliogenesis. Differentiation 83:S12–S22
Engel BD, Ishikawa H, Wemmer KA, Geimer S, Wakabayashi K, Hirono M, Craige B, Pazour GJ, Witman GB, Kamiya R et al (2012) The role of retrograde intraflagellar transport in flagellar assembly, maintenance, and function. J Cell Biol 199:151–167
Kubo T, Brown JM, Bellve K, Craige B, Craft JM, Fogarty K, Lechtreck KF, Witman GB (2016) Together, the IFT81 and IFT74 N-termini form the main module for intraflagellar transport of tubulin. J Cell Sci 129:2106–2119
Bhogaraju S, Cajanek L, Fort C, Blisnick T, Weber K, Taschner M, Mizuno N, Lamla S, Bastin P, Nigg EA et al (2013) Molecular basis of tubulin transport within the cilium by IFT74 and IFT81. Science 341:1009–1012
Jonassen JA, SanAgustin J, Baker SP, Pazour GJ (2012) Disruption of IFT complex A causes cystic kidneys without mitotic spindle misorientation. J Am Soc Nephrol 23:641–651
Hao L, Thein M, Brust-Mascher I, Civelekoglu-Scholey G, Lu Y, Acar S, Prevo B, Shaham S, Scholey JM (2011) Intraflagellar transport delivers tubulin isotypes to sensory cilium middle and distal segments. Nat Cell Biol 13:790–798
Pedersen LB, Miller MS, Geimer S, Leitch JM, Rosenbaum JL, Cole DG (2005) Chlamydomonas IFT172 is encoded by FLA11, interacts with CrEB1, and regulates IFT at the flagellar tip. Curr Biol 15:262–266
Acknowledgements
We thank Dr. Roger Sloboda for critical review of this manuscript. We are also grateful to Dr. Karl Lechtreck for sharing unpublished data, and Drs. Joel Rosenbaum, Dennis Diener, George Witman, Robert Bloodgood and Kaiyao Huang for providing antibodies and plasmids. This work was supported by the following awards (to J.P.) from the National Basic Research Program of China (973 program) (2013CB910700), National Natural Science Foundation of China (31330044, 31671387) and Sino-German Center for Research Promotion (GZ990).
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XZ., Y.L. and F.G. designed and performed the experiments and analyzed the data. J.P. designed the study, analyzed the data and wrote the paper together with X.Z.
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Zhu, X., Liang, Y., Gao, F. et al. IFT54 regulates IFT20 stability but is not essential for tubulin transport during ciliogenesis. Cell. Mol. Life Sci. 74, 3425–3437 (2017). https://doi.org/10.1007/s00018-017-2525-x
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DOI: https://doi.org/10.1007/s00018-017-2525-x