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Spin-labeled photosynthetic reaction centers fromRhodobacter sphaeroides studied by electron paramagnetic resonance spectroscopy and molecular dynamics simulations

  • P. Gajula
  • I. V. Borovykh
  • C. Beier
  • T. Shkuropatova
  • P. Gast
  • H. -J. Steinhoff
Article

Abstract

A new strategy has been applied that combines molecular dynamics (MD) simulations and electron paramagnetic resonance (EPR) spectroscopy to study the structure and conformational dynamics of the spin-labeled photosynthetic reaction center (RC) ofRhodobacter sphaeroides. This protein serves here as a model system to demonstrate the applicability of this new methodology. The RC contains five native cysteines and EPR experiments show that only one cysteine, located on the H subunit, is accessible for spin labeling. The EPR spectra calculated from MD simulation trajectories of spin labels bound to the native cysteines C156 and C234 in subunit H reveal that only the spin label side chain at position 156 provides a spectrum which agrees with the experimental EPR spectrum.

Keywords

Electron Paramagnetic Resonance Molecular Dynamic Simulation Electron Paramagnetic Resonance Spectrum Nitroxide Electron Paramagnetic Resonance Signal 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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Copyright information

© Springer 2007

Authors and Affiliations

  • P. Gajula
    • 1
  • I. V. Borovykh
    • 1
  • C. Beier
    • 1
  • T. Shkuropatova
    • 2
  • P. Gast
    • 2
  • H. -J. Steinhoff
    • 1
  1. 1.Department of PhysicsUniversity of OsnabrückOsnabrückGermany
  2. 2.Department of Biophysics, Huygens LaboratoryLeiden UniversityLeidenThe Netherlands

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