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Thymine-starvation up-regulates a region of theArabidopsis thaliana chromosome III containing both the UMP synthase gene and a proximal gene encoding a novel F-box protein

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Abstract

We have cloned theArabidopsis thaliana undine 5′-monophosphate synthase (UMP synthase) locus and characterized transcript levels of this gene as well as the transcript encoding a novel F-box protein found upstream of UMP synthase,Skp1-interacting partner5 (SKIPS). The 31 end of theSKIP5 gene is 405 bp from the 5′ end of the UMP synthase gene. To determine whether these proximate genes are coordinately or independently regulated, we have used an RT-PCR method to quantitate the transcript levels of each gene relative to 18S ribosomal RNA. Previous work has demonstrated an up-regulation of the UMP synthase gene in tobacco callus in the presence of compounds such as 5-fluoroorotate and aminopterin that induce thymine starvation. Here, we present results showing that both the UMP synthase andSKIP5 genes are coordinately up-regulated in the presence of fluoroorotic acid.

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Literlature Cited

  • Bai C, Sen P, Hofmann K, Ma L, Goebl M, Harper JW, Elledge SJ (1996) SKP1 connects cell cycle regulators to the ubiquitin proteolysis machinery through a novel motif, the F-box. Cell86: 263–274

    Article  PubMed  CAS  Google Scholar 

  • Brandenburg SA, Williamson CL, Slocum RD (1998) Characterization of a cDNA encoding the small subunit of Arabidopsis carbamoyl phosphate synthetase (Accession No. U73175). Plant Physiol117: 717

    Article  Google Scholar 

  • Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem162: 156–159

    Article  PubMed  CAS  Google Scholar 

  • del Pozo J, Estelle M (1999) Function of the ubiquitin-proteosome pathway in auxin response. Trends Plant Sci4: 107–112

    Article  PubMed  Google Scholar 

  • del Pozo JC, Estelle M (2000) F-box proteins and protein degradation: an emerging theme in cellular regulation. Plant Mol Biol44: 123–128

    Article  PubMed  Google Scholar 

  • Desai U, Pfaffle P (1995) Single step purification of a thermostable DNA polymerase expressed inEscherichia coli. BioTechniques19: 780–784

    PubMed  CAS  Google Scholar 

  • Dingwall C, Laskey R (1986) Protein import into the cell nucleus. Annu Rev Cell Biol2: 367–390

    Article  PubMed  CAS  Google Scholar 

  • Engelke DR, Krikos A, Bruck ME, Ginsburg D (1990) Purification of Thermus aquaticus DNA polymerase expressed in Escherichia coli. Anal Biochem191: 396–400

    Article  PubMed  CAS  Google Scholar 

  • Farras R, Ferrando A, Jasik J, Kleinow T, Okresz L, Tiburcio A, Saldiert K, del Pozo C, Schell J, Koncz C (2001) SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase. Embo J20: 2742–2756

    Article  PubMed  CAS  Google Scholar 

  • Grubmeyer C, Segura E, Dorfman R (1993) Active site lysines in orotate phosphoribosyltransferase. J Biol Chem268: 20299–20304

    PubMed  CAS  Google Scholar 

  • Jones GE, Hahn J (1979)Haplopappus gracilis cell strains resistant to pyrimidine analogues. Theor Appl Genet54: 81–87

    Article  CAS  Google Scholar 

  • Klebe R, Roriguez S, VerBeek M, Giambernardi T (1999) Simple method for “Hot Starting” RT-PCR. BioTechniques27: 1108–1110

    PubMed  CAS  Google Scholar 

  • Löftier M, Jockei J, Schuster G, Becker C (1997) Dihydroorotat-ubiquinone oxidoreductase links mitochondria in the biosynthesis of pyrimidine nucleotides. Mol Cell Biochem174: 125–129

    Article  Google Scholar 

  • Minet M, Dufour M-E, Lacroute F (1992) Complementation ofSaccharomyces cerevisiae auxotrophic mutants byArabidopsis thaliana cDNAs. Plant J2: 417–422

    PubMed  CAS  Google Scholar 

  • Murashige T, Skoog F (1962) A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol Plant15: 473–497

    Article  CAS  Google Scholar 

  • Nasr F, Berthauche N, Dufour M-E, Minet M, Lacroute F (1994) Heterospecific cloning ofArabidopsis thaliana cDNAs by direct complementation of pyrimidine auxotrophic mutants ofSaccharomyces cerevisiae. I. Cloning and sequence analysis of two cDNAs catalysing the second, fifth and sixth steps of the denovo pyrimidine biosynthesis pathway. Mol Gen Genet244: 23–32

    Article  PubMed  CAS  Google Scholar 

  • Nelson D, Lasswell J, Rogg L, Cohen M, Bartel B (2000) FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis. Cell101: 331–340

    Article  PubMed  CAS  Google Scholar 

  • Ostin A, Kowalyczk M, Bhalerao R, Sandberg G (1998) Metabolism of indole-3-acetic acid in Arabidopsis. Plant Physiol118: 285–296

    Article  PubMed  CAS  Google Scholar 

  • Ozturk D, Dorfman R, Scapin G, Sacchettini J, Grubmeyer C (1995) Locations and functional roles of conserved lysine residues inSalmonella typhimurium orotate phosphoribosyltransferase. Biochemistry34: 10755–10763

    Article  PubMed  CAS  Google Scholar 

  • Ruegger M, Dewey E, Gray WM, Hobbie L, Turner J, Estelle M (1998) The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast grr1p. Genes Dev12: 198–207

    Article  PubMed  CAS  Google Scholar 

  • Samach A, Klenz J, Kohalmi S, Risseeuw E, Haughn G, Crosby W (1999) The UNUSUAL FLORAL ORGANS gene ofArabidopsis thaliana is an F-box protein required for normal patterning and growth in the floral meristem. Plant J20: 433–445

    Article  PubMed  CAS  Google Scholar 

  • Santoso D, Thornburg RW (1992) Isolation and Characterization of UMP synthase mutants from haploid cell suspensions ofNicotiana tabacum. Plant Physiol99: 1216–1225

    Article  PubMed  CAS  Google Scholar 

  • Santoso D, Thornburg RW (1998) UMP synthase is transcriptionally regulated by pyrimidine levels inNicotiana plumbaginifolia. Plant Physiol116: 815–821

    Article  PubMed  CAS  Google Scholar 

  • Santoso D, Thomburg RW (2000) Fluoroorotic acid-selectedNicotiana plumbaginifolia cell lines with a stable thymine starvation phenotype have lost the thymine-regulated transcriptional program. Plant Physiol123: 1517–1524

    Article  PubMed  CAS  Google Scholar 

  • Scapin G, Grubmeyer C, Sacchettini J (1994) Crystal structure of orotate phosphoribosyltransferase. Biochemistry33: 1287–1294

    Article  PubMed  CAS  Google Scholar 

  • Scapin G, Ozturk D, Grubmeyer C, Sacchettini J (1995) The crystal structure of the orotate phosphoribosyltransferase complexed with orotate and alpha-D-5-phosphoribosyl-1-pyrophosphate. Biochemistry34: 10744–10754

    Article  PubMed  CAS  Google Scholar 

  • Smiley J, Jones M (1992) A unique catalytic and inhibitorbinding role for Lys93 of yeast orotidylate decarboxylase. Biochemistry31: 12162–12168

    Article  PubMed  CAS  Google Scholar 

  • Somers DE, Schultz TF, Milnamow M, Kay SA (2000) ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis. Cell101: 319–329

    Article  PubMed  CAS  Google Scholar 

  • Suchi M, Mizuno H, Kawai Y, Tsuboi T, Sumi S, Okajima K, Hodgson M, Ogawa H, Wada Y (1997) Molecular cloning of the human UMP synthase gene and characterization of point mutations in two hereditary orotic aciduria families. Am J Hum Genet60: 525–539

    PubMed  CAS  Google Scholar 

  • Sung ZR, Jacques S (1980) 5-fluorouracil resistance in carrot cell cultures: Its use in studying the interaction of the pyrimidine and arginine pathways. Planta148: 389–396

    Article  CAS  Google Scholar 

  • Voytas DF, Konieczny A, Cummings MP, Ausubel RM (1990) The structure, distribution and evolution of theTa1 retrotransposable element family ofArabidopsis thaliana. Genetics126: 713–721

    PubMed  CAS  Google Scholar 

  • Williamson CL, Lake MR, Slocum RD (1996) A cDNA encoding carbamoyl phosphate synthetase large subunit(carB) fromArabidopsis (Accession No. U40341). Plant Physiol111: 1354

    Google Scholar 

  • Xiao W, Jang J (2000) F-box proteins in Arabidopsis. Trends Plant Sci5: 454–457

    Article  PubMed  CAS  Google Scholar 

  • Xie D, Feys B, James S, Nieto-Rostro M, Turner J (1998) COl1: an Arabidopsis gene required for jasmonate-regulated defense and fertility. Science280: 1091–1094

    Article  PubMed  CAS  Google Scholar 

  • Zhou L, Lacroute F, Thornburg RW (1997) DNA sequence of dihydroorotase fromArabidopsis thaliana (AF000146). Plant Physiol114: 1569

    Google Scholar 

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Correspondence to Robert Thornburg.

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Kafer, C., Thornburg, R. Thymine-starvation up-regulates a region of theArabidopsis thaliana chromosome III containing both the UMP synthase gene and a proximal gene encoding a novel F-box protein. J. Plant Biol. 45, 161–169 (2002). https://doi.org/10.1007/BF03030309

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