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Conformational analysis of some antibacterial agent 4-aminodiphenyl sulfones

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Abstract

Conformational free energy calculations using an empirical potential function (ECEPP/2) and hydration shell model were carried out on the four 4-aminodiphenyl sulfone analogues of 4, 4′-diamino-2′-methyldiphenyl sulfone, 4, 2′, 4′-triaminodiphenyl sulfone, 4, 4′-diaminodiphenyl sulfone, and 4-aminodiphenyl sulfone as antibacterial agents onMycobacterium lufu. The conformational energy was minimized from starting conformations which included possible combinations of torsion angles in the molecule. The conformational entropy change of each conformation was computed using a harmonic approximation. To understand the hydration effect on the conformation of the molecule in aqueous solution, the contributions of water-accessible volume and the hydration free energy of each group or atom in the lowest-free-energy conformation was calculated and compared each other. From comparison of the computed lowest-free-energy conformations of four analogues with their antibacterial activities, it is known that the conformation and the hydrophobicity of sulfonyl group and its adjacent carbon atom in each compound are the essential factors to show the strong antibacterial activity.

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Literature Cited

  1. Lopez de Compadre, R.L., Pearlstein, R.A., Hopfinger, A.J. and Seydel, J.K.: A Quantitative Structure-Activity Relationship Analysis of Some 4-Aminodiphenyl Sulfone Antibacterial Agents Using Linear Free Energy and Molecular Modeling Methods.J. Med. Chem. 30, 900 (1987).

    Article  PubMed  CAS  Google Scholar 

  2. Coats, E.A., Cordes, H.P., Kulkarni, V.M., Richter, M., Schaper, K.J., Wiese, M. and Seydel, J.K.: Multiple regression and principal component analysis of antibacterial activities of sulfones and sulfonamides in whole cell and cell-free systems of various DDS sensitive and resistant bacterial strains.J. Quant. Struct.-Act. Relat,4, 99 (1985).

    Article  CAS  Google Scholar 

  3. Mabilia, M., Pearlstein, R.A. and Hopfinger, A.J.: Molecular shape analysis and energetics-based intermolecular modeling of benzylpyrimidine dihydrofolate reductase inhibitors.Eur. J. Med. Chem. 20, 163 (1985).

    CAS  Google Scholar 

  4. Kang, Y.K., Nemethy, G. and Scheraga, H.A.: Free Energies of Hydration of Solute Molecules. 1. Improvement of the Hydration Shell Model by Exact Computations of Overlapping Volumes.J. Phys. Chem. 91, 4105 (1987);erratum, ibid. J. Phys. Chem.,92, 1382 (1988).

    Article  CAS  Google Scholar 

  5. Kang, Y.K., Némethy, G. and Scheraga, H.A.: Free Energies of Hydration of Solute Molecules. 2. Application of the Hydration Shell Model to Nonionic Organic Molecules.J. Phys. Chem. 91, 4109 (1987)erratum, ibid. J. Phys. Chem.,92, 6568 (1987).

    Article  CAS  Google Scholar 

  6. Kang, Y.K., Nemethy, G. and Scheraga, H.A.: Free Energies of Hydration of Solute Molecules. 3. Application of the Hydration Shell Model to Charged Organic Molecules.J. Phys. Chem. 91, 4118 (1987).

    Article  CAS  Google Scholar 

  7. Kang, Y.K., Gibson, K.D., Némethy, G. and Scheraga, H.A.: Free Energies of Hydration of Solute Molecules. 4. Revised Treatment of the Hydration Shell Model.J. Phys. Chem. 92, 4739 (1988).

    Article  CAS  Google Scholar 

  8. Némethy, G., Pottle, M.S. and Scheraga, H.A.: Energy Parameters in Polypeptides. 9 Updating of Geometrical Parameters, Nonbonded Interactions, and Hydrogen Bond Interactions for the Naturally Occurring Amino Acids.J. Phys. Chem. 87, 1883 (1983).

    Article  Google Scholar 

  9. IUPAC Commission on Nomenclature of Organic Chemistry.Pure Appl. Chem. 45, 11 (1976).

    Article  Google Scholar 

  10. Shutton, L.E., Ed.:Table of Interatomic Distances and Configuration in Molecules and Ions. The Chemical Society, Special Publication No. 11 (1958) and 18, London (1965).

  11. Kang, Y.K.: Conformational Analysis Programs for Biological Molecules (CONBIO).KRICT Research Report (1988).

  12. Yan, J.F., Momany, F.A., Hoffmann, R. and Scheraga, H.A.: Energy Parameters in Polyppetides. II. Semiempirical Molecular Orbital Calculations for Model Peptides.J. Phys. Chem. 74, 420 (1970).

    Article  CAS  Google Scholar 

  13. Dennis, J.E., Gay, D.M. and Welsch, R.E.: Algorithm 573-An Adaptive Nonlinear Least-Squares Algorithm.ACM Trans. Math. Software 7, 369 (1981).

    Article  Google Scholar 

  14. Gibson, K.D. and Scheraga, H.A.: Revised Algorithms for the Build-up Procedure for Predicting Protein Conformations by Energy Minimization.J. Comput. Chem. 8, 826 (1987).

    Article  CAS  Google Scholar 

  15. Gó, N. and Scheraga, H.A.: Analysis of the Contribution of Internal Vibrations to the Statistical Weights of Equilibrium Conformations of Macromolecules.J. Chem. Phys. 51, 4751 (1969); On the Use of Classical Statistical Mechanics in the Treatment of Polymer Chain Conformation.Macromolecules 9, 535 (1976).

    Article  Google Scholar 

  16. Abramowitz, M. and Stegun, I.A. Eds.:Handbook of Mathematical Functions, Dover, New York, p. 884 (1972).

    Google Scholar 

  17. Zimmerman, S.S., Pottle, M.S., Némethy, G. and Scheraga, H.A.: Conformational Analysis of the Twenty Naturally Occurring Amino Acid Residues Using ECEPP.Macromolecules 10, 1 (1977).

    Article  PubMed  CAS  Google Scholar 

  18. Laidler, K.J.:Physical Chemistry with Biological Applications, Benjamin/Cummings, Menlo Park (1978).

    Google Scholar 

  19. Wolff, M.E., Ed.:Burger's Medicinal Chemistry, Part I, John Wiely & Sons, New York (1980).

    Google Scholar 

  20. Foye, W.O., Ed.:Principles of Medicinal Chemistry, Lea & Febiger, Philadelphia (1974).

    Google Scholar 

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Lee, S.H., Chung, U.T. & Kang, Y.K. Conformational analysis of some antibacterial agent 4-aminodiphenyl sulfones. Arch. Pharm. Res. 13, 43–50 (1990). https://doi.org/10.1007/BF02857833

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