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Refined procedures for accurate determination of solution structures of nucleic acids by two dimensional nuclear magnetic resonance spectroscopy

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Abstract

New procedures have been described for accurate determination of solution structures of nucleic acids. These are two fold; new two dimensional nuclear magnetic resonance techniques and better approaches for interpretation of nuclear magnetic resonance data for structure determination purposes. The significant development in two dimensional nuclear magnetic resonance techniques for this purpose areω 1 -scaling and recording of pure phase spectra. Use ofω 1-scaled correlated and nuclear Overhauser effect spectra for estimation of interproton distances and 1H-1H coupling constants has been described. Computer simulation procedures for exact determination of structure have been described. Experimental spectra demonstrating the application of new procedures have been presented.

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Abbreviations

2D NMR:

Two-dimensional nuclear magnetic resonance spectroscopy

COSY:

correlated spectroscopy

NOE:

nuclear Overhauser effect

NOESY:

NOE spectroscopy

References

  • Anil Kumar, Wuthrich, K. and Ernst, R. R. (1980)Biochem. Biophys. Res. Commun.,95, 1.

    Article  Google Scholar 

  • Aue, W. P., Bartholdi, E. and Ernst, R. R. (1976)J. Chem. Phys.,64, 2229.

    Article  CAS  Google Scholar 

  • Broido, M. S., Zon, G. and James, T. L. (1984)Biochem. Biophys. Res. Commun.,150, 117.

    Google Scholar 

  • Braunschweiler, L., Bodenhausen, G. and Ernst, R. R. (1983)Mol. Phys.,98, 53.

    Google Scholar 

  • Brown, L. R. (1984)J. Magn. Reson.,57, 513.

    CAS  Google Scholar 

  • Chary, K. V. R., Hosur, R. V., Govil, G., Tan Zu-Kun and Miles, H. T. (1987)Biochemistry,26, 1315.

    Article  PubMed  CAS  Google Scholar 

  • Chazin, W. J., Wuthrich, K., Hyberts, S., Rance, M. Denny, W. A. and Leupin, W. (1986)J. Mol. Biol,190, 439.

    Article  PubMed  CAS  Google Scholar 

  • Clore, G. M. and Gronenborn, A. M. (1985)FEBS Lett,179, 187.

    Article  PubMed  CAS  Google Scholar 

  • Eich, G., Bodenhausen, G. and Ernst, R. R. (1982)J. Am. Chem. Soc,104, 3731.

    Article  CAS  Google Scholar 

  • Ernst, R. R., Bodenhausen, G. and Wokaun, A. (1987)Nuclear magnetic resonance in one and two dimensions (Oxford: Clarendon Press)

    Google Scholar 

  • Feigon, J., Denny, W. A., Leupin, W. and Reams, D. R. (1983a)Biochemistry,22, 5930.

    Article  PubMed  CAS  Google Scholar 

  • Feigon, J., Leupin, W., Denny, W. A. and Kearns, D. R. (1983b)Biochemistry,22, 5943.

    Article  PubMed  CAS  Google Scholar 

  • Frechet, D., Cheng, D. M., Kan, L. S. and Tso, P. O. P. (1983)Biochemistry,22, 5194.

    Article  PubMed  CAS  Google Scholar 

  • Govil, G., Kumar, N. V., Ravikumar, M., Hosur, R. V., Roy, K. B. and Miles, H. T. (1985)Proc. Int. Symp Biomol. Struct. Interactions, Suppl. J. Biosci..,8, 656.

    Google Scholar 

  • Gundhi, P., Chary, K. V. R. and Hosur, R. V. (1985)FEBS Lett.,191, 92.

    Article  CAS  Google Scholar 

  • Haasnoot, C. A. G., Westernick, H. T., Van der Marel, G. A. and van Boom, J. H. (1983)J. Biomol. Struct. Dynam.,1, 131.

    CAS  Google Scholar 

  • Hare, D., Shapiro, L. and Patel, D. J. (1986a)Biochemistry,25, 7445.

    Article  PubMed  CAS  Google Scholar 

  • Hare, D., Shapiro, L. and Patel, D. J. (1986b)Biochemistry,25, 7456.

    Article  PubMed  CAS  Google Scholar 

  • Hare, D. R., Ribeiro, N. S., Wemmer, D. E. and Reid, B. R. (1985)Biochemistry,24, 4300.

    Article  PubMed  CAS  Google Scholar 

  • Hare, D. R., Wemmer, D. E., Chou, S. -H, Drobny, G. and Reid, B. R. (1983)J. Mol. Biol.,171, 319.

    Article  PubMed  CAS  Google Scholar 

  • Hosur, R. V. (1986)Curr. Sci.,55, 597.

    CAS  Google Scholar 

  • Hosur, R. V., Ravikumar, M., Roy, K. B., Tan Zu-Kun, Miles, H. T. and Govil, G. (1985a) inMagnetic resonance in biology and medicine (eds G. Govil, C. L. Khetrapal and A. Saran) (New Delhi: Tata McGraw-Hill) p. 243.

    Google Scholar 

  • Hosur, R. V., Chary, K. V. R. and Ravikumar, M. (1985b)Chem. Phys. Lett,116, 105.

    Article  CAS  Google Scholar 

  • Hosur, R. V., Ravikumar, M. and Sheth, A. (1985c)J. Magn. Reson.,65, 375.

    CAS  Google Scholar 

  • Hosur, R. V., Ravikumar, M., Chary, K. V. R., Sheth, A., Govil, G., Tan Zu-Kun and Miles, H. T. (1986a)FEBSLett.,205, 71.

    Article  CAS  Google Scholar 

  • Hosur, R. V., Sheth, A., Chary, K. V. R., Ravikumar, M., Govil, G., Tan Zu-Kun and Miles, H. T. (1986b)Biochem. Biophys. Res. Commun.. 139, 1224.

    Article  PubMed  CAS  Google Scholar 

  • Hosur, R. V., Sheth, A. and Majumdar, A. (1987a)J. Magn. Reson., (in press).

  • Hosur, R. V., Chary, K. V. R., Majumdar, A. and Govil, G. (1987b)Life Sciences Advances-Biochemistry, (in press)

  • Jeener, J. (1971) Ampere Summer School, Basko, Polje, Yugoslavia.

  • Jeener, J., Meier, B. H., Bachmann, P. and Ernst, R. R. (1979)J. Chem. Phys.,71, 4546.

    Article  CAS  Google Scholar 

  • Macura, S. and Ernst, R. R. (1980)Mol. Phys.,41, 95.

    Article  CAS  Google Scholar 

  • Macura, S., Wuthrich, K. and Ernst, R. R. (1982)J. Magn. Reson.,46, 269.

    CAS  Google Scholar 

  • Majumdar, A. and Hosur, R. V. (1987)Chem. Phys. Lett.,138, 431.

    Article  CAS  Google Scholar 

  • Marion, D. and Wuthrich, K. (1983)Biochem. Biophys. Res. Commun.,113, 967.

    Article  PubMed  CAS  Google Scholar 

  • Nagayama, K., Anil Kumar, Wuthrich, K. and Ernst, R. R. (1980)J.Magn. Reson.,40, 321.

    CAS  Google Scholar 

  • Oschkinat, H., Pastore, A., Pfandler, P. and Bodenhausen, G. (1986)J. Magn. Reson.,69, 559.

    CAS  Google Scholar 

  • Ravikumar, M., Hosur, R. V., Roy, K. B., Miles, H. T. and Govil, G. (1985)Biochemistry,24, 7703.

    Article  Google Scholar 

  • Ravikumar, M., Sheth, A. and Hosur, R. V. (1986)J. Magn. Reson.,69, 418.

    CAS  Google Scholar 

  • Rinkel, L. J. and Altona, C. (1987)J. Biomol. Struct. Dyna.,4, 621.

    CAS  Google Scholar 

  • Scheek, R. M., Russo, N., Boelens, R., Kaptein, R. and van Boom, J. H. (1983)J.Am. Chem. Soc.,105, 2914.

    Article  CAS  Google Scholar 

  • Sheth, A., Ravikumar, M. and Hosur, R. V. (1986)J. Magn. Reson.,70, 213.

    CAS  Google Scholar 

  • Sheth, A., Ravikumar, M., Hosur, R. V., Govil, G., Tan Zu-Kun and Miles, H. T. (1987a)Biochem. Biophys. Res. Commn.,144, 26.

    Article  CAS  Google Scholar 

  • Sheth, A., Hosur, R. V. and Govil, G. (1987b)FEBS Lett., (in press)

  • States, D. J., Haberkorn, R. A., and Ruben, D. J. (1982)J. Magn. Reson.,48, 286.

    CAS  Google Scholar 

  • Weiss, M. A., Patel, D. J., Sauer, R. T. and Karplus, M. (1984)Proc. Natl. Acad. Sci. USA,81, 130.

    Article  PubMed  CAS  Google Scholar 

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Hosur, R.V., Chary, K.V.R., Sheth, A. et al. Refined procedures for accurate determination of solution structures of nucleic acids by two dimensional nuclear magnetic resonance spectroscopy. J Biosci 13, 71–86 (1988). https://doi.org/10.1007/BF02832214

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