Skip to main content
Log in

Specificity in the regulation of eukaryotic gene transcription

  • Published:
Journal of Biosciences Aims and scope Submit manuscript

Abstract

The regulation of eukaryotic gene transcription poses major challenges in terms of the innumerable protein factors required to ensure tissue or cell-type specificity. While this specificity is sought to be explained by the interaction of cis-acting DNA elements and thetrans-acting protein factor(s), considerable amount of degeneracy has been observed in this interaction. Immunoglobulin heavy chain gene expression in B cells and liver-specific gene expression are discussed as examples of this complexity in this article. Heterodimerization and post-translational modification of transcription factors and the organization of composite promoter elements are strategies by which diverse sets of genes can be regulated in a specific manner using a finite number of protein factors

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Dwarki V J, Francis V SN K, Bhat G J and Padmanaban G.1987 Regulation of cytochrome P-450 gene transcription, messenger RNA and apoprotein levels by heme;J. Biol. Chem. 262 16958–16962

    PubMed  CAS  Google Scholar 

  • Gerster T, Matthias P, Thali M, Jiricny J and Schafner W 1987 Cell type specificity elements of the immunoglobulin heavy chain gene enhancer;EMBO J. 6 1323–1330

    PubMed  CAS  Google Scholar 

  • Green M R 1992 Transcriptional transgressions;Nature (London) 357 364–365

    Article  CAS  Google Scholar 

  • He J-S and Fulco A J 1991 A barbiturate-regulated protein binding to a common sequence in the cytochrome P-450 genes of rodents and bacteria;J. Biol. Chem. 266 7864–7869

    PubMed  CAS  Google Scholar 

  • Johnson P F and McKnight S L 1989 Eukaryotic transcriptional regulatory proteins;Annu. Rev. Biochem. 58 799–839

    Article  PubMed  CAS  Google Scholar 

  • Lai E and Darnell J E Jr 1991 Transcriptional control in hepatocytes;Trends Biochem. Sci. 16 427–430

    Article  PubMed  CAS  Google Scholar 

  • Lamb P and McKnight S L 1991 Diversity and specificity in transcriptional regulation: the benefits of heterotypic dimerization;Trends Biochem. Sci. 16 417–422

    Article  PubMed  CAS  Google Scholar 

  • Miner J N and Yamamoto K 1991 Regulatory crosstalk at composite response elements;Trends Biochem. Sci. 16 423–426

    Article  PubMed  CAS  Google Scholar 

  • Parvin J D, Marc Timmers H Th and Sharp P A 1992 Promoter specificity of basal transcription factors; Cell 68 1135–1144

    Article  PubMed  CAS  Google Scholar 

  • Ptashne M 1988 How eukaryotic transcriptional activators work;Nature 335 683–689

    Article  PubMed  CAS  Google Scholar 

  • Poornima U, Venkateswara Rao M, Venkateswar V, Rangarajan P N and Padmanaban G 1992 Identification and functional characterization of a cis-acting positive DNA element regulating CYP2B1/B2 gene transcription in rat liver;Nucleic Acids Res. 20 557–562

    Article  Google Scholar 

  • Rangarajan P N, Ravishankar H and Padmanaban G 1987 Isolation of a cytochrome P-450e gene variant and characterization of its 5’-flanking sequences;Biochem. Biophys. Res. Commun. 114 258–263

    Article  Google Scholar 

  • Rangarajan P N and Padmanaban G 1989 Regulation of cytochrome P-450 b/e gene expression by a heme-and phenobarbitone-modulated transcription factor;Proc. Natl. Acad. Sci. USA 86 3963–3967

    Article  PubMed  CAS  Google Scholar 

  • Roeder R G 1991 The complexities of eukaryotic transcription initiation: regulation of pre-initiation complex assembly;Trends Biochem. Sci. 16 402–408

    Article  PubMed  CAS  Google Scholar 

  • Sawadogo M and Sentenac A C 1990 Polymerase B (II) and general transcription factors;Annu. Rev. Biochem. 59 711–754

    Article  PubMed  CAS  Google Scholar 

  • Schreiber E, Miller M M, Schaffner W and Matthias PC 1989 Octamer transcription factors mediate B-cell specific expression immunoglobulin heavy chain genes; inTissue specific gene expression (ed.) R Renkawitz (Weinheim: VCH Verlagsgesellschaft) pp 33–51

    Google Scholar 

  • Spencer C A, Lestrange R C, Novak V, Hayward W and Groudine M C 1990 The block to transcription elongation is promoter dependent in normal and Burkitts Lymphoma c-myc alleles;Genes Dev. 4 75–88

    Article  PubMed  CAS  Google Scholar 

  • Wasylyk B 1988 Enhancers and transcription factors in the control of gene expression;Biochim. Biophp Acta 951 17–035

    CAS  Google Scholar 

  • Wirth T, Staudt L and Baltimore DC 1987 An octamer oligonucleotide upstream of a TATA motif is sufficient for lymphoid-specific promoter activity;Nature (London)) 329 174–178

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Based on the lecture given at the Symposium on “Regulation of Gene Expression” held in Bangalore on January 20–21, 1992.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Padmanaban, G. Specificity in the regulation of eukaryotic gene transcription. J Biosci 18, 27–36 (1993). https://doi.org/10.1007/BF02703035

Download citation

  • Received:

  • Revised:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF02703035

Keywords

Navigation