Abstract
Catalysis in replication networks has become an important issue in biophysics and other areas of biology. Examples are RNA catalysis, idiotype recognition in the immune response and dynamical models of Maynard-Smith games in sociobiology.
Chemical reaction networks describing catalysed, template-induced reproduction of three species are analysed in full generality. The nine-dimensional parameter space is reduced to three relevant angular coordinates which determine completely the phase portraits (PPs) and the bifurcation patterns. All cases are classified and all generic as well as most of the nongeneric transitions are listed and described.
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Literature
Biebricher, C. K., M. Eigen and W. C. Gardiner. 1983. Kinetics of RNA replication.Biochemistry 22, 2544–2559.
Biebricher, C. K., M. Eigen and W. C. Gardiner. 1984. Kinetics of RNA replication: plusminus asymmetry and double-strand formation.Biochemistry 23, 3186–3194.
Biebricher, C. K., M. Eigen and W. C. Gardiner. 1985. Kinetics of RNA replication: competition and selection among self-replicating RNA species.Biochemistry 24, 6550–6560.
Bomze, I. M. 1983. Lotka-Volterra equation and replicator dynamics: a two-dimensional classification.Biol. Cybern. 48, 201–211.
Cech, T. R. 1986. RNA as an enzyme.Sci. Am. 255(5), 76–84.
Cech, T. R. 1988. Conserved sequences and structures of group I introns: building an active site for RNA catalysis—a review.Gene 73, 259–271.
Dawkins, R. 1982.The Extended Phenotype. San Francisco: Freeman.
Doudna, J. A. and J. W. Szostak. 1989. RNA-catalysed synthesis of complementary-strand RNA.Nature 339, 519–522.
Eigen, M. 1971. Selforganization of matter and the evolution of biological macromolecules.Naturwissenschaften 58, 465–523.
Eigen, M. and P. Schuster. 1978. The Hypercycle. A principle of natural self-organization. Part B: the abstract hypercycle.Naturwissenschaften 65, 7–41.
Eigen, M., J. McCaskill and P. Schuster. 1988. Molecular quasi-species.J. phys. Chem. 92, 6881–6891.
Eigen, M., J. McCaskill and P. Schuster. 1989. The molecular quasi-species.Adv. Chem. Phys. 75, 149–263.
Guckenheimer, J. and P. Holmes. 1983. Nonlinear oscillations, dynamical systems, and bifurcations of vector fields, pp. 120–123. New York: Springer.
Hofbauer, J., P. Schuster and K. Sigmund. 1979. A note on evolutionary stable strategies and game dynamics.J. theor. Biol. 81, 609–612.
Hofbauer, J., P. Schuster, K. Sigmund and R. Wolff. 1980. Dynamical systems under constant organization II: homogeneous growth functions of degreep=2.SIAM J. appl. Math. 38, 282–304.
Hofbauer, J. 1981. On the occurrence of limit cycles in the Volterra-Lotka equation.Nonlinear Analysis 5, 1003–1007.
Hofbauer, J. and K. Sigmud. 1988.The Theory of Evolution and Dynamical Systems. Cambridge University Press.
Maynard-Smith, J. 1982.Evolution and the Theory of Games. Cambridge University Press.
Perelson, A. S. (ed.). 1988a.Theoretical Immunology, Vols I and II Redwood City, CA: Addison-Wesley.
Perelson, A. S. 1988b. Toward a realistic model of the immune system. InTheoretical Immunology, A. S. Perelson (ed.), Vol. II, pp. 377–401, Redwood City, CA: Addison-Wesley.
Schuster, P., K. Sigmund and R. Wolff. 1978. Dynamical systems under constant organization I. Topological analysis of a family of non-linear differential equations—a model for catalytic hypercycles.Bull. math. Biol. 40, 743–769.
Schuster, P., K. Sigmund and R. Wolff. 1980. Mass action kinetics of selfreplication in flow reactors.J. math. Anal. Appl. 78, 88–112.
Schuster, P. 1981. Selection and evolution in molecular systems. InNonlinear Phenomena in Physics and Biology, R. H. Enns, B. L. Jones, R. M. Miura and S. S. Rangnekar (eds), pp. 485–548, New York: Plenum Press.
Schuster, P. and K. Sigmund. 1983. Replicator dynamics.J. theor. Biol. 100, 533–538.
Schuster, P. and K. Sigmund. 1985a. Towards a dynamics of social behaviour: strategic and genetic models for the evolution of animal conflicts.J. social. biol. Struct. 8, 255–277.
Schuster, P. and K. Sigmund. 1985b. Dynamics of evolutionary optimization.Ber. Bunsenges. phys. Chem. 89, 668–682.
Taylor, P. D. and L. B. Jonker. 1978. Evolutionarily stable strategies and game dynamics.Math. Biosci. 40, 145–156.
Zeeman, E. C. 1981. Dynamics of the evolution of animal conflicts.J. theor. Biol. 89, 249–270.
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Stadler, P.F., Schuster, P. Dynamics of small autocatalytic reaction networks—I. bifurcations, permanence and exclusion. Bltn Mathcal Biology 52, 485–508 (1990). https://doi.org/10.1007/BF02462263
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DOI: https://doi.org/10.1007/BF02462263