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Mapping of 22Notl linking clones on human chromosome 3 by polymerase chain reaction and somatic cell hybrid panels

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Abstract

Twenty-two human chromosome 3 derived and partially sequencedNotl linking clones were mapped using two somatic cell hybrid panels. Somatic cell hybrid mapping was performed by Southern hybridization and/or by polymerase chain reaction (PCR), using 300–500 bp CpG-rich sequences surroundingNotl sites. Thus, 22 newNotl site-tagged (sequence tagged sites) STSs were created, distributed over the entire human chromosome 3. The majority of these linking clones tag known or unknown expressed sequences (genes). Together with other physical and genetic mapping methods, localization ofNotl linking clones facilitates the construction of a long-range physical map and, at the same time, a transcriptional map of human chromosome 3.

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References

  • Allikmets RL, Kashuba VI, Pettersson B et al. (1994)NotI linking clones as a tool for joining physical and genetic maps of the human genome.Genomics 19: 303–309.

    Google Scholar 

  • Bird AP (1987) CpG islands as gene markers in the vertebrate nucleus.Trends Genet 3: 342–347.

    Google Scholar 

  • Cid LP, Montrose-Rafizadeh C, Smith DI et al. (1995) Cloning of a putative human voltage-gated chloride channel (ClC-2) cDNA widely expressed in human tissues.Hum Mol Genet 4: 407–413.

    Google Scholar 

  • Hino O, Testa JR, Buetow KH et al. (1993) Universal mapping probes and the origin of human chromosome 3.Proc Natl Acad Sci USA 90: 730–734.

    Google Scholar 

  • Ichikawa H, Hosoda F, Arai Y et al. (1993) ANotI restriction map of the entire long arm of human chromosome 21.Nature Genet 4: 361–366.

    Google Scholar 

  • Kahn RA, Kern FC, Clark J, Gelmann EP, Rulka C (1991) Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins.J Biol Chem 266: 2606–2614.

    Google Scholar 

  • LaForgia S, Lasota J, Latif F et al. (1993) Detailed genetic and physical map of the 3p chromosome region surrounding the familial RCC chromosome translocation, t(3;8)(p14.2;q24.1).Cancer Res 53: 3118–3124.

    Google Scholar 

  • Larsen F, Gundersen G, Lopez R, Prydz H (1992a) CpG islands as gene markers in the human genome.Genomics 13: 1095–1107.

    Google Scholar 

  • Larsen F, Gundersen G, Prydz H (1992b) Choice of enzymes for mapping based on CpG islands in the human genome.GATA 9: 80–85.

    Google Scholar 

  • Lubinski J, Hadaczek P, Podolski J et al. (1994) Common regions of deletion in chromosome 3p12 and 3p14.2 in primary clear cell renal carcinomas.Cancer Res 54: 3710–3713.

    Google Scholar 

  • Miller YE, Drabkin HA, Jones C, Fisher JH (1990) Human aminoacylase-1: cloning, regional assignment to distal chromosome 3p21.1, and identification of a cross-hybridizing sequence on chromosome 18.Genomics 8: 149–154.

    Google Scholar 

  • Poustka A, Lehrach H (1986) Jumping libraries and linking libraries: The next generation of molecular tools in mammalian genetics.Trends Genet 2: 174–179.

    Google Scholar 

  • Sanson M, Zhang F, Demczuk S et al. (1993) Isolation and mapping of 45NotI linking clones to chromosome 22.Genomics 17: 776–779.

    Google Scholar 

  • Smith CL, Lawrance SK, Gillespie GA et al. (1987) Strategies for mapping and cloning macroregions of mammalian genomes. In: Gottesman MM, ed.Methods in Enzymology, Vol. 151, New York: Academic Press, pp 461–489.

    Google Scholar 

  • Wang J-Y, Zabarovsky ER, Talmadge C et al. (1994) Somatic cell hybrid panel andNotI linking clones for physical mapping of human chromosome 3.Genomics 20: 105–113.

    Google Scholar 

  • Warburton D, Yu M-T, Tantravahi U et al. (1993) Regional localization of 32NotI-HindIII fragments from a human chromosome 13 library by a somatic cell hybrid panel andin situ hybridization.Genomics 16: 355–360.

    Google Scholar 

  • Zabarovsky ER, Boldog F, Thompson T et al. (1990) Construction of a human chromosome 3 specificNotI linking library using a novel cloning procedure.Nucleic Acids Res 18: 6319–6324.

    Google Scholar 

  • Zabarovsky ER, Boldog F, Erlandsson R et al. (1991) New strategy for mapping the human genome based on a novel procedure for construction of jumping libraries.Genomics 11: 1030–1039.

    Google Scholar 

  • Zabarovsky ER, Kashuba VI, Pokrovskaya ES et al. (1993) Alu-PCR approach to isolateNotI linking clones from the 3p14–3p21 region frequently deleted in renal cell carcinoma.Genomics 16: 713–719.

    Google Scholar 

  • Zhu Y, Cantor CR, Smith CL (1993) DNA sequence analysis of human chromosome 21NotI linking clones.Genomics 18: 199–205.

    Google Scholar 

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Correspondence to R. Allikmets.

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accepted for publication by G. R. Sutherland

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Allikmets, R., Kashuba, V.I., Huebner, K. et al. Mapping of 22Notl linking clones on human chromosome 3 by polymerase chain reaction and somatic cell hybrid panels. Chromosome Res 4, 33–37 (1996). https://doi.org/10.1007/BF02254942

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  • DOI: https://doi.org/10.1007/BF02254942

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