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Early evolutionary origin of the planktic foraminifera inferred from small subunit rDNA sequence comparisons

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Abstract

Phylogenetic analysis of five partial planktic foraminiferal small subunit (SSU) ribosomal (r) DNA sequences with representatives of a diverse range of eukaryote, archaebacterial, and eubacterial taxa has revealed that the evolutionary origin of the foraminiferal lineage precedes the rapid eukaryote diversification represented by the “crown” of the eukaryotic tree and probably represents one of the earliest splits among extant free-living aerobic eukaryotes. The foraminiferal rDNA sequences could be clearly separated from known symbionts, commensals, and food organisms. All five species formed a single monophyletic group distinguished from the “crown” group by unique foraminiferal specific insertions as well as considerable nucleotide distance in aligned regions.

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References

  • Bé AWH (1977) An ecological, zoogeographic and taxonomic review of recent planktonic foraminifera. In: Ramsay ATS (ed) Oceanic micropaleontology. Academic Press, New York, pp 1–100

    Google Scholar 

  • Bé AWH, Hemleben C, Anderson OR, Spindler M, Hacunda J, Tuntivate-Choy S (1977) Laboratory and field observations of living planktonic foraminifera. Micropaleontology 23:155–179

    Google Scholar 

  • Cavalier-Smith T (1987) Eukaryotes with no mitochondria. Nature 326:332–333

    Google Scholar 

  • Darling KF, Kroon D, Wade CM, Leigh Brown AJ (1996a) The isolation and amplification of the 18S ribosomal RNA gene from planktonic foraminifers using gametogenic specimens. In: Whatley RC, Moguilevsky A (eds) Microfossils and oceanic environments. Chapter 3.1. University of Wales, Aberystwyth Press, pp 249–259

  • Darling KF, Kroon D, Wade CM, Leigh Brown AJ (1996b) Molecular evolution of the planktic foraminifera. J Foram Res 26:324–330

    Google Scholar 

  • Felsenstein J (1978) Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool 27:401–410

    Google Scholar 

  • Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376

    Google Scholar 

  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791

    Google Scholar 

  • Felsenstein J (1993) PHYLIP manual version 3.52c. Berkeley University Herbarium, University of California, Berkeley

    Google Scholar 

  • Fitch WM (1971) Toward defining the course of evolution: minimum change for a specified free topology. Syst Zool 20:406–416

    Google Scholar 

  • Fitch WM, Margoliash E (1967) Construction of phylogenetic trees. A method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155:279–284

    Google Scholar 

  • Hasegawa M, Hashimoto T, Adachi J, Iwabe N, Miyata T (1993) Early branchings in the evolution of eukaryotes: ancient divergence of Entamoeba that lacks mitochondria revealed by protein sequence data. J Mol Evol 36:380–388

    Google Scholar 

  • Hashimoto T, Nakamura Y, Nakamura F, Shirakura T, Adachi J, Goto N, Ojkamoto K, Hasegawa M (1994) Protein phylogeny gives a robust estimation for early divergences of eukaryotes: phylogenetic place of a mitochondria-lacking protozoan,Giardia lamblia. Mol Biol Evol 11:65–71

    Google Scholar 

  • Hemleben C, Spindler M, Breitinger I, Ott R (1987) Morphological and physiological responses ofGlobigerinoides sacculifer (Brady) under varying laboratory conditions. Marine Micropaleontol 12:305–324

    Google Scholar 

  • Hemleben C, Spindler M, Anderson OR (1989) Modern planktonic foraminifera. Springer-Verlag, New York

    Google Scholar 

  • Kishino H, Hasegawa M (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data and the branching order of the Hominoidea. J Mol Evol 4:406–425

    Google Scholar 

  • Knoll AH (1992) The early evolution of eukaryotes: a geological perspective. Science 256:622–627

    Google Scholar 

  • Langer MR, Lipps JH, Piller WE (1993) Molecular paleobiology of protists: amplification and direct sequencing of foraminiferal DNA. Micropaleontology 39:63–68

    Google Scholar 

  • Leipe DD, Gunderson JH, Nerad TA, Sogin ML (1993) Small subunit ribosomal RNA ofHexamita inflata and the quest for the first branch in the eukaryotic tree. Mol Biochem Parasitol 59:41–48

    Google Scholar 

  • Loomis WF, Smith DW (1990) Molecular phylogeny ofDictyostelium discoideum by protein sequence comparison. Proc Natl Acad Sci USA 87:9093–9097

    Google Scholar 

  • Maidak BL, Larsen N, McCaughey MJ, Overbeek R, Olsen GJ, Fogel K. Blandy J, Woese CR (1994) The ribosomal database project. Nucleic Acids Res 22:3484–3487

    Google Scholar 

  • Merle C, Moullade M, Lima O, Perasso R (1994) An attempt to phylogenetically characterise some planktonic foraminifers on the basis of 28S rDNA partial sequences. C R Acad Sci II Sci Terre Planetes 319:149–153

    Google Scholar 

  • Neefs J, Van de Peer Y, Hendriks L, De Wachter R (1990) Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res 18:2237–2242

    Google Scholar 

  • Pawlowski J, Bolivar I, Guiard-Maffia J, Gouy M (1994) Phylogenetic position of foraminifera inferred from LSU rDNA sequences. Mol Biol Evol 11:929–938

    Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing evolutionary trees. Mol Biol Evol 4:406–425

    Google Scholar 

  • Schlegel M (1991) Protist evolution and phylogeny as discerned from small subunit ribosomal RNA sequence comparisons. Eur J Protistol 27:207–219

    Google Scholar 

  • Smith SW, Overbeek R, Woese CR, Gilbert W, Gillevet PM (1994) The genetic data environment an expandable GUI for multiple sequence analysis. Comput Appl Biosci 10:671–675

    Google Scholar 

  • Sogin ML (1989) Evolution of eukaryotic microorganisms and their small subunit ribosomal RNAs. Am Zool 29:487–499

    Google Scholar 

  • Sogin ML (1991) Early evolution and the origin of eukaryotes. Curr Opin Genet Dev 1:457–463

    Google Scholar 

  • Wainwright PO, Hinkle G, Sogin ML, Stickel SK (1993) Monophyletic origins of the metazoa: an evolutionary link with fungi. Science 260:340–342

    Google Scholar 

  • White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Harcourt Brace Jovanovich, San Diego, pp 315–322

    Google Scholar 

  • Wray CG, Langer MR, DeSalle R, Lee JJ, Lipps JH (1995) Origin of the foraminifera. Proc Natl Acad Sci 92:141–145

    Google Scholar 

  • Yang Z, Roberts D (1995) On the use of nucleic acid sequences to infer early branchings in the tree of life. Mol Biol Evol 12:451–458

    Google Scholar 

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Wade, C.M., Darling, K.F., Kroon, D. et al. Early evolutionary origin of the planktic foraminifera inferred from small subunit rDNA sequence comparisons. J Mol Evol 43, 672–677 (1996). https://doi.org/10.1007/BF02202115

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  • DOI: https://doi.org/10.1007/BF02202115

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