Skip to main content
Log in

Spectral processing methods for the removal of t1 noise and solvent artifacts from NMR spectra

  • Published:
Journal of Biomolecular NMR Aims and scope Submit manuscript

Summary

A data processing method is described which reduces the effects of t1 noise artifacts and improves the presentation of 2D NMR spectral data. A t1 noise profile is produced by measuring the average noise in each column. This profile is then used to determine weighting coefficients for a sliding weighted smoothing filter that is applied to each row, such that the amount of smoothing each point receives is proportional to both its estimated t1 noise level and the level of t1 noise of neighbouring points. Thus, points in the worst t1 noise bands receive the greatest smoothing, whereas points in low-noise regions remain relatively unaffected. In addition, weighted smoothing allows points in low-noise regions to influence neighbouring points in noisy regions. This method is also effective in reducing the noise artifacts associated with the solvent resonance in spectra of biopolymers in aqueous solution. Although developed primarily to improve the quality of 2D NMR spectra of biopolymers prior to automated analysis, this approach should enhance processing of spectra of a wide range of compounds and can be used whenever noise occurs in discrete bands in one dimension of a multi-dimensional spectrum.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

Abbreviations

ATX III:

Anemonia sulcata neurotoxin III

NOESY:

2D homonuclear dipolar correlated spectroscopy

TOCSY:

total correlation spectroscopy

ANI:

average noise measurement routine

RT1:

t1 noise reduction routine

BFX:

baseline correction routine

References

  • Adler, M. and Wagner, G. (1991)J. Magn. Reson.,91, 450–454.

    Google Scholar 

  • Baumann, G., Wider, G., Ernst, R.R. and Wüthrich, K. (1981)J. Magn. Reson.,44, 402–406.

    Google Scholar 

  • Bax, A., Ikura, M., Kay, L.E. and Zhu, G. (1991)J. Magn. Reson.,91, 174–178.

    Google Scholar 

  • Beress, L., Beress, R. and Wunderer, G. (1975)FEBS Lett.,50, 311–314.

    Google Scholar 

  • Denk, W., Wagner, G., Rance, M. and Wüthrich, K. (1985)J. Magn. Reson.,62, 350–355.

    Google Scholar 

  • Dietrich, W., Rüdel, C.H. and Neumann, M. (1991)J. Magn. Reson.,91, 1–11.

    Google Scholar 

  • Eccles, C., Güntert, P., Billeter, M. and Wüthrich, K. (1991)J. Biomol. NMR,1, 111–130.

    Google Scholar 

  • Glaser, S. and Kalbitzer, H.R. (1986)J. Magn. Reson.,68, 350–354.

    Google Scholar 

  • Klevit, R.E. (1985)J. Magn. Reson.,62, 551–555.

    Google Scholar 

  • Kleywegt, G.J. (1991)Computer-Assisted Assignment of 2D and 3D NMR Spectra of Proteins, PhD thesis, University of Utrecht.

  • Kleywegt, G.J., Boelens, R., Cox, M., Llinas, M. and Kaptein, R. (1991)J. Biomol. NMR,1, 23–47.

    Google Scholar 

  • Kuroda, Y., Wada, A., Yamazaki, T. and Nagayama, K. (1989)J. Magn. Reson.,84, 604–610.

    Google Scholar 

  • Marion, D. and Bax, A. (1989)J. Magn. Reson.,83, 205–211.

    Google Scholar 

  • Marion, D., Ikura, M., Tschudin, R. and Bax, A. (1989a)J. Magn. Reson.,85, 393–399.

    Google Scholar 

  • Marion, D., Ikura, M. and Bax, A. (1989b)J. Magn. Reson.,84, 425–430.

    Google Scholar 

  • Mehlkopf, A.F., Korbee, D., Tiggelman, T.A. and Freeman, R. (1984)J. Magn. Reson.,58, 315–323.

    Google Scholar 

  • Oschkinat, H., Holak, T.A. and Cieslar, C. (1991)Biopolymers,31, 699–712.

    Google Scholar 

  • Otting, G., Widmer, H., Wagner, G. and Wüthrich, K. (1986)J. Magn. Reson.,66, 187–193.

    Google Scholar 

  • Pearson, G.A. (1977)J. Magn. Reson.,27, 265–272.

    Google Scholar 

  • Simorre, J.P. and Marion, D. (1990)J. Magn. Reson.,89, 191–197.

    Google Scholar 

  • Tsang, P., Wright, P.E. and Rance, M. (1990)J. Magn. Reson.,88, 210–215.

    Google Scholar 

  • Turner, C.J. and Patt, S.L. (1989)J. Magn. Reson.,85, 492–505.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Manoleras, N., Norton, R.S. Spectral processing methods for the removal of t1 noise and solvent artifacts from NMR spectra. J Biomol NMR 2, 485–494 (1992). https://doi.org/10.1007/BF02192811

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF02192811

Keywords

Navigation