Abstract
The centromeres of two tomato chromosomes have been precisely localized on the molecular linkage map through dosage analysis of trisomic stocks. To map the centromeres of chromosomes 7 and 9, complementary telo-, secondary, and tertiary trisomic stocks were used to assign DNA markers to their respective chromosome arms and thus to localize the centromere at the junction of the short and long arms. It was found that both centromeres are situated within a cluster of cosegregating markers. In an attempt to order the markers within the centric clusters, genetic maps of the centromeric regions of chromosomes 7 and 9 were constructed from F2 populations of 1620Lycopersicon esculentum × L. pennellii (E × P) plants and 1640L. esculentum × L. pimpinellifolium (E × PM) plants. Despite the large number of plants analyzed, very few recombination events were detected in the centric regions, indicating a significant suppression of recombination at this region of the chromosome. The fact that recombination suppression is equally strong in crosses between closely related (E × PM) and remotely related (E × P) parents suggests that centromeric suppression is not due to DNA sequence mismatches but to some other mechanism. The greatest number of centromeric markers was resolved in theL. esculentum × L. pennellii F2 population. The centromere of chromosome 7 is surrounded by eight cosegregating markers: three on the short arm, five on the long arm. Similarly, the centric region of chromosome 9 contains ten cosegregating markers including one short arm marker and nine long arm markers. The localization of centromeres to precise intervals on the molecular linkage map represents the first step towards the characterization and ultimate isolation of tomato centromeres.
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References
Alfenito MR, Birchler JA (1993) Molecular characterization of a maize B chromosome centric sequence. Genetics 135:589–597
Anonymous (1991) TGC Report 41:75
Arens P, Odinot P, van Heusden AW, Lindhout P, Vosman B (1995) GATA- and GACA-repeats are not evenly distributed throughout the tomato genome. Genome 38:84–90
Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9:208–218
Barton DW (1951) Localized chiasmata in the differentiated chromosomes of the tomato. Genetics 36:374–381
Beadle GW (1932) A possible influence of the spindle fibre on crossing-over in Drosophila. Proc Natl Acad Sci USA 18:160–165
Bernatzky R, Tanksley SD (1986) The detection of single or low copy sequences in tomato on Southern blots. Plant Mol Biol Rep 4:37–41
Broun P, Tanksley SD (1995) Characterization and genetic mapping of simple sequence repeats in the tomato genome. Plant Mol Biol, in press
Clarke L, Carbon J (1980) Isolation of a yeast centromere and construction of functional small circular chromosomes. Nature 287:504–509
Fulton TM, Chunwongse J, Tanksley SD (1995) Microprep protocol for extraction of DNA from tomato and other herbaceous plants. Plant Mol Biol Rep, in press
Gadish I, Zamir D (1987) Differential zygotic abortion in an interspecificLycopersicon cross. Genome 29:156–159
Ganal MW, Lapitan NLV, Tanksley SD (1988) A molecular and cytogenetic survey of major repeated DNA sequences in tomato (Lycopersicon esculentum). Mol Gen Genet 213:262–268
Ganal MW, Young ND, Tanksley SD (1989) Pulsed-field gel electrophoresis and physical mapping of large DNA fragments in theTm-2a region of chromosome 9 in tomato. Mol Gen Genet 215:395–400
Grandillo S, Tanksley SD (1995) Genetic analysis of RFLPs, GATA microsatellites and RAPDs in a cross betweenL. esculentum andL. pimpinellifolium. Theor Appl Genet, in press
Haaf T, Warburton PE, Willard HF (1992) Integration of human alpha-satellite DNA into simian chromosomes: centromere protein binding and disruption of normal chromosome segregation. Cell 70:681–696
Hahnenberger KM, Baum MP, Polizzi CM, Carbon J, Clarke L (1989) Construction of functional artificial minichromosomes in the fission yeastSchizosaccharomyces pombe. Proc Natl Acad Sci USA 86:577–581
Khush GS, Rick CM (1967a) Tomato tertiary trisomics: origin, identification, morphology and use in determining position of centromeres and arm location of markers. Can J Genet Cytol 9:610–631
Khush GS, Rick CM (1967b) Studies on the linkage map of chromosome 4 of the tomato and on the transmission of induced deficiencies. Genetica 38:74–94
Khush GS, Rick CM (1968a) Cytogenetic analysis of the tomato genome by means of induced deficiencies. Chromsoma 23:452–484
Khush GS, Rick CM (1968b) Tomato telotrisomics: origin, identification, and use in linkage mapping. Cytologia 33:137–148
Khush GS, Rick CM (1969) Tomato secondary trisomics: origin, identification, morphology, and use in cytogenetic analysis of the genome. Heredity 24:129–146
Khush GS, Rick CM, Robinson RW (1964) Genetic activity in a heterochromatic chromosome segment of the tomato. Science 145:1432–1434
Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12:172–175
Lambie EJ, Roeder GS (1986) Repression of meiotic crossing over by a centromere (Cen3) inSaccharomyces cerevisiae. Genetics 114:769–789
Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174–181
Maluszynska J, Heslop-Harrison JS (1991) Localization of tandemly repeated DNA sequences inArabidopsis thaliana. Plant 1:159–166
Martin GB, Ganal MW, Tanksley SD (1992) Construction of a yeast artificial chromosome library of tomato and identification of cloned segments linked to two disease resistance loci. Mol Gen Genet 233:25–32
Martin GB, Brommonschenkel SH, Chunwongse J, Frary A, Ganal MW, Spivey R, Wi T, Earle ED, Tanksley SD (1993) Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science 262:1432–1436
Martinez-Zapater JM, Estelle MA, Somerville CM (1986) A highly repeated DNA sequence inArabidopsis thaliana. Mol Gen Genet 204:417–423
Mather K (1939) Crossing over and heterochromatin in theX chromosome ofDrosophila melanogaster. Genetics 24:413–435
Messeguer R, Ganal M, de Vicente MC, Young ND, Bolkan H, Tanksley SD (1991) High-resolution RFLP map around the root knot nematode resistance gene (Mi) in tomato. Theor Appl Genet 82:529–536
Miller JC, Tanksley SD (1990) RFLP analysis of phylogenetic relationships and genetic variation in the genusLycopersicon. Theor Appl Genet 80:437–448
Paterson AH, Damon S, Hewitt JD, Zamir D, Rabinowitch HD, Lincoln SE, Lander ES, Tanksley SD (1991) Mendelian factors underlying quantitative traits in tomato: comparison across species, generations, and environments. Genetics 127:181–197
Presting GG, Tanksley SD (1995) Most interstitial telomeric repeat sequences of tomato map near centromeres. Plant Genome III Abstr: p69
Richards EJ, Goodman HM, Ausubel FM (1991) The centromere region ofArabidopsis thaliana chromosome 1 contains telomeresimilar sequences. Nucleic Acids Res 19:3351–3357
Rick CM (1958) The role of natural hybridization in the derivation of cultivated tomatoes in western South America. Econ Bot 12:346–367
Rick CM (1969) Controlled introgression of chromosomes ofSolanum pennellii intoLycopersicon esculentum: segregation and recombination. Genetics 62:753–768
Roberts PA (1965) Difference in the behavior of eu- and heterochromatin: crossing-over. Nature 205:725–726
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual (2nd edn). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
Schumacher K, Ganal M, Theres K (1995) Genetic and physical mapping of thelateral suppressor (ls) locus in tomato. Mol Gen Genet 246:761–766
Sherman JD, Stack SM (1995) Physical map of crossover frequency on synaptonemal complexes from tomato primary microsporocytes. TGC Report 45:42–43
Singer MF (1982) Highly repeated sequences in mammalian genomes. Int Rev Cytol 76:67–112
Steiner NC, Hahnenberger KM, Clarke L (1993) Centromeres of the fission yeastSchizosaccharomyces pombe are highly variable genetic loci. Mol Cell Biol 13:4578–4587
Tanksley SD, Miller J, Paterson A, Bernatzky R (1988) Molecular mapping of plant chromosomes. In: Gustafson J, Appels R (eds) Chromosome structure and function. Plenum Press, New York, pp 157–172
Tanksley SD, Ganal MW, Prince JP, de Vicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB, Messeguer R, Miller JC, Miller L, Paterson AH, Pineda O, Roder MS, Wing RA, Wu W, Young ND (1992) High density molecular linkage map of the tomato and potato genomes. Genetics 132:1141–1160
Tyler-Smith C, Willard HF (1993) Mammalian chromosome structure. Curr Opin Genet Dev 3:390–397
Vallejos CE, Tanksley SD (1983) Segregation of isozyme markers and cold tolerance in an interspecific backcross of tomato. Theor Appl Genet 66:241–247
Van Daelen RAJJ, Gerbens F, van Russien F, Aarts J, Hontelez J, Zabel P (1993) Long-range physical maps of two loci (Aps-1 and GP79) flanking the root-knot nematode resistance gene (Mi) near the centromere of tomato chromosome 6. Plant Mol Biol 23:185–192
Van Wordragen MF, Weide R, Liharska T, Van Der Steen A, Koornneef M, Zabel P (1994) Genetic and molecular organization of the short arm and pericentromeric region of tomato chromosome 6. Euphytica 79:169–174
Willard HF (1990) Centromeres of mammalian chromosomes. Trends Genet 6:410–416
Willard HF (1992) Centromeres — primary constrictions are primarily complicated. Hum Mol Genet 1:667–668
Xia X, Selvaraj G, Bertrand H (1993) Structure and evolution of a highly repetitive DNA sequence fromBrassica napus. Plant Mol Biol 21:213–224
Young ND, Zamir D, Ganal MW, Tanksley SD (1988) Use of isogenic lines and simultaneous probing to identify DNA markers tightly linked to theTm-2a gene in tomato. Genetics 120:579–585
Zamir D, Tanksley SD, Jones RA (1982) Haploid selection for low temperature tolerance of tomato pollen. Genetics 101:129–137
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Communicated by R. G. Herrmann
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Frary, A., Presting, G.G. & Tanksley, S.D. Molecular mapping of the centromeres of tomato chromosomes 7 and 9. Molec. Gen. Genet. 250, 295–304 (1996). https://doi.org/10.1007/BF02174387
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DOI: https://doi.org/10.1007/BF02174387
Key words
- Centromere
- Lycopersicon esculentum
- Trisomics
- Recombination suppression
- RFLPs