Abstract
Many eukaryotic DNA-binding proteins share a conserved amino acid sequence known as thebasic region leucinezipper (bZIP) domain. bZIP proteins recognise DNA, upon dimerization, in a sequence-specific manner. TheCommonPlantRegulatoryFactor 1 (CPRF1) is a bZIP transcription factor from parsley (Petroselinum crispum), which recognises defined elements containing ACGT cores.CPRF1 genomic DNA was cloned and the gene was sequenced. Analysis of the sequence data revealed the existence of 12 exons and 11 introns within a stretch of about 9 kb. A second RNA species hybridising toCPRF1 probes was identified as an alternatively spliced, additionalCPRF1 transcript containing intron 8. This polyadenylated RNA species showed accumulation characteristics very similar to those of theCPRF1 mRNA. CPRF1 specifically binds an ACGT-containing element which is located within the composite regulatory unit that is necessary and sufficient for light activation of the parsley chalcone synthase (CHS) minimal promoter. Expression studies at the mRNA level demonstrated thatCPRF1 mRNA is present in all organs of light-grown plants in whichCHS mRNA expression is detectable, and light-dependentCHS mRNA accumulation was shown to be blocked by cycloheximide. Therefore, translation of a protein factor, possibly CPRF1, may be a prerequisite forCHS promoter activation.
Similar content being viewed by others
References
Aeschbacher RA, Schrott M, Potrykus I, Saul MW (1991) Isolation and molecular characterization ofPosF21, anArabidopsis thaliana gene which shows characteristics of a bZIP class transcription factor. Plant J 1:303–316
Armstrong GA, Weisshaar B, Hahlbrock K (1992) Homodimeric and heterodimeric leucine zipper proteins and nuclear factors from parsley recognize diverse promoter elements with ACGT cores. Plant Cell 4:525–537
Ballas N, Wong L-M, Theologis A (1993) Identification of the auxin-responsive element,AuxRE, in the primary indoleacetic acid-inducible gene,PS-IAA4/5, of pea (Pisum sativum). J Mol Biol 233:580–596
Brown JWS (1986) A catalogue of splice junction and putative branch point sequences from plant introns. Nucleic Acids Res 14:9549–9559
Chappell J, Hahlbrock K (1984) Transcription of plant defense genes in response to UV light or fungal elicitor. Nature 311:76–78
Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12:387–395
Dorit RL, Schoenbach L, Gilbert W (1990) How big is the universe of exons? Science 250:1377–1382
Ellenberger T (1994) Getting a grip on DNA recognition: structures of the basic region leucine zipper, and the basic region helix-loop-helix DNA-binding domains. Curr Opin Struct Biol 4:12–21
Feldbrügge M, Sprenger M, Dinkelbach M, Yazaki K, Harter K, Weisshaar B (1994) Functional analysis of a light-responsive plant bZIP transcriptional regulator. Plant Cell 6:1607–1621
Foster R, Izawa T, Chua N-H (1994) Plant bZIP proteins gather at ACGT elements. FASEB J 8:192–200
Frankel AD, Kim PS (1991) Modular structure of transcription factors: implications for gene regulation. Cell 65:717–719
Fritze K, Staiger D, Czaja I, Walden R, Schell J, Wing D (1991) Developmental and UV light regulation of the snapdragon chalcone synthase promoter. Plant Cell 3:893–905
Frohnmeyer H, Ehmann B, Kretsch T, Rocholl M, Harter K, Nagatani A, Furuya M, Batschauer A, Hahlbrock K, Schäfer E (1992) Differential usage of photoreceptors for chalcone synthase gene expression during plant development. Plant J 2:899–906
Fromm H, Katagiri F, Chua N-H (1991) The tobacco transcription factor TGA1a binds to a sequence in the 5′ upstream region of a gene encoding a TGA1a-related protein. Mol Gen Genet 229:181–188
Goodall GJ, Kiss T, Filipowicz W (1991) Nuclear RNA splicing and small nuclear RNAs and their genes in higher plants. Oxford Surv Plant Mol Cell Biol 7:255–296
Goodrich J, Carpenter R, Coen ES (1992) A common gene regulates pigmentation pattern in diverse plant species. Cell 68:955–964
Graham MW, Doherty JP, Woodcock DM (1990) Efficient construction of plant genomic libraries requires the use ofmcr-host strains and packaging mixes. Plant Mol Biol Rep 8:18–27
Hahlbrock K, Ragg H (1975) Light-induced changes of enzyme activities in parsley cell suspension cultures. Effects of inhibitors of RNA and protein synthesis. Arch Biochem Biophys 166:41–46
Hahlbrock K, Scheel D (1989) Physiology and molecular biology of phenylpropanoid metabolism. Annu Rev Plant Physiol Plant Mol Biol 40:347–369
Harter K, Frohnmeyer H, Kircher S, Kunkel T, Mühlbauer S, Schäfer E (1994a) Light induces rapid changes of the phosphorylation pattern in the cytosol of evacuolated parsley protoplasts. Proc Natl Acad Sci USA 91:5038–5042
Harter K, Kircher S, Forhnmeyer H, Kenz M, Nagy F, Schäfer E (1994b) Light-regulated modification and nuclear translocation of cytosolic G-box binding factors in parsley. Plant Cell 6:545–559
Hartings H, Maddaloni M, Lazzaroni N, Di Fonzo N, Motto M, Salamini F, Thompson R (1989) TheO2 gene, which regulates zein deposition in maize endosperm, encodes a protein with structural homologies to transcriptional activators. EMBO J 8:2795–2801
Hermann A, Schulz W, Hahlbrock K (1988) Two alleles of the single-copy chalcone synthase gene in parsley differ by a transposon-like element. Mol Gen Genet 212:93–98
Izawa T, Foster R, Chua NH (1993) Plant bZIP protein DNA binding specificity. J Mol Biol 230:1131–1144
Johnson PF, McKnight SL (1989) Eukaryotic transcriptional regulatory proteins. Annu Rev Biochem 58:799–839
Katagiri F, Lam E, Chua N-H (1989) Two tobacco DNA-binding proteins with homology to the nuclear factor CREB. Nature 340:727–730
Kawalleck P, Somssich IE, Feldbrügge M, Hahlbrock K, Weisshaar B (1993) Polyubiquitin gene expression and structural properties of theubi4-2 gene inPetroselinum crispum. Plant Mol Biol 21:673–684
Lam E, Green PJ, Wong M, Chua N-H (1989) Phytochrome activation of two nuclear genes requires cytoplasmic protein synthesis. EMBO J 8:2777–2783
Landschulz WH, Johnson PF, McKnight SL (1988) The leucine zipper: a hypothetical structure common to a new class of DNA-binding proteins. Science 240:1759–1764
Lois R, Hahlbrock K (1992) Differential wound activation of members of the phenylalanine ammonia-lyase and 4-coumarate: CoA ligase gene families in various organs of parsley plants. Z. Naturforschung 47c:90–94
Meier I, Gruissem W (1994) Novel conserved sequence motifs in plant G-box binding proteins and implications for interactive domains. Nucleic Acids Res 22:470–478
Miao Z-H, Liu X, Lam E (1994) TGA3 is a distinct member of the TGA family of bZIP transcription factors inArabidopsis thaliana. Plant Mol Biol 25:1–11
Minami M, Huh GH, Yang P, Iwabuchi M (1993) Coordinate gene expression of 5 subclass histones and the putative transcription factors, HBP-1a and HBP-1b, of histone genes in wheat. Plant Mol Biol 23:429–434
Mitchell PJ, Tjian R (1989) Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins. Science 245:371–378
Mogen BD, MacDonald MH, Graybosch R, Hunt AG (1990) Upstream sequences other than AAUAAA are required for efficient messenger RNA 3′-end formation in plants. Plant Cell 2:1261–1272
Oeda K, Salinas J, Chua N-H (1991) A tobacco bZIP transcription activator (TAF-1) binds to a G-box like motif conserved in plant genes. EMBO J 10:1793–1802
Pabo CO, Sauer RT (1992) Transcription factors: Structural families and principles of DNA recognition. Annu Rev Biochem 61:1053–1095
Proudfoot N (1980) Pseudogenes. Nature 286:840–841
Qin X-F, Holuigue L, Horvath DM, Chua N-H (1994) Immediate early transcription activation by salicylic acid via the cauliflower mosaic virusas-1 element. Plant Cell 6:863–874
Reimold U, Kröger M, Kreuzaler F, Hahlbrock K (1983) Coding and 3′ non-coding nucleotide sequence of chalcone synthase mRNA and assignment of amino acid sequence of the enzyme. EMBO J 2:1801–1805
Salinas J, Oeda K, Chua N-H (1992) Two G-box-related sequences confer different expression patterns in transgenic tobacco. Plant Cell 4:1485–1493
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
Sanfaçon H, Brodmann P, Hohn T (1992) A dissection of the cauliflower mosaic virus polyadenylation signal. Genes Dev 5:141–149
Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467
Schena M, Lloyd AM, Davis RW (1993) TheHAT4 gene ofArabidopsis encodes a developmental regulator. Genes Dev 7:367–379
Schindler U, Menkens AE, Beckmann H, Ecker JR, Cashmore AR (1992) Heterodimerization between light-regulated and ubiquitously expressedArabidopsis GBF bZIP proteins. EMBO J 11:1261–1273
Schmelzer E, Jahnen W, Hahlbrock K (1988) In situ localization of light-induced chalcone synthase mRNA, chalcone synthase, and flavonoid end products in epidermal cells of parsley leaves. Proc Natl Acad Sci USA 85:2989–2993
Schulze-Lefert P, Dangl JL, Becker-André M, Hahlbrock K, Schulz W (1989) Inducible in vivo DNA footprints define sequences necessary for UV light activation of the parsley chalcone synthase gene. EMBO J 8:651–656
Sheen J-Y, Seed B (1988) Electrolyte gradient gels for DNA sequencing. Bio Techniques 6:942–944
Singh K, Dennis ES, Ellis JG, Llewellyn DJ, Tokuhisa JG, Wahleithner JA, Peacock WJ (1990) OCSBF-1, a maizeocs enhancer binding factor: isolation and expression during development. Plant Cell 2:891–903
Suckow M, von Wilcken-Bergmann B, Müller-Hill B (1993) Identification of three residues in the basic regions of the bZIP proteins GCN4, C/EBP and TAF-1 that are involved in specific DNA binding. EMBO J 12:1193–1200
Tabata T, Takase H, Takayama S, Mikami K, Nakatsuka A, Kawata T, Nakayama T, Iwabuchi M (1989) A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif. Science 245:965–967
Vinson CR, Sigler PB, McKnight SL (1989) Scissors-grip model for DNA recognition by a family of leucine zipper proteins. Science 246:911–916
Weisshaar B, Armstrong GA, Block A, da Costa e Silva O, Hahlbrock K (1991) Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J 10:1777–1786
Weisshaar B, Feldbrügge M, Armstrong GA, Yazaki K, Hahlbrock K (1992) Elements involved in light regulation of the parsleychs promoter: cis-acting nucleotide sequences and trans-acting factors. In: Scalbert A (ed) Groupe Polyphenols: the 20th anniversary. Groupe Polyphenols, Paris, pp 281–289
Ylstra B, Busscher J, Franken J, Hollman PCH, Mol JNM, van Tunen AJ (1994) Flavonols and fertilization inPetunia hybrida: localization and mode of action during pollen tube growth. Plant J 6:201–212
Ylstra B, Tourraev A, Brinkmann AO, Heberle-Bors E, van Tunen AJ (1995) Steroid hormones stimulate germination and tube growth of in vitro-matured tobacco pollen. Plant Physiol 107:639–643
Zabarovsky ER, Allikmets RL (1986) An improved technique for the efficient construction of gene libraries by partial filling-in of cohesive ends. Gene 42:119–123
Author information
Authors and Affiliations
Additional information
Communicated by H. Sacdler
Rights and permissions
About this article
Cite this article
Feldbrügge, M., Hahlbrock, K. & Weisshaar, B. The transcriptional regulatorCPRF1: expression analysis and gene structure. Molec. Gen. Genet. 251, 619–627 (1996). https://doi.org/10.1007/BF02174110
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1007/BF02174110