Skip to main content
Log in

Geometry of the dry-state oligomerization of 2′,3′-cyclic phosphates

  • Published:
Journal of Molecular Evolution Aims and scope Submit manuscript

Summary

Evaporation of a solution of thymidine plus either theexo or theendo diastereomer of uridine cyclic 2′,3′-O, O-phosphorothioate (U > p(S) in 1,2-diaminoethane hydrochloride buffer gave the 2′,5′ and 3′,5′ isomers of (P-thio) uridylylthymidine (Up(S)dT) in a ratio of 1:2 with a combined yield of about 20%. These isomers were re-converted to U > p(S) and dT by a reaction that is known to proceed by an in-line mechanism. Both the 2′,5′ and 3′,5′ isomers gave as product the same diastereomer of U > p(S) that had been used originally in their formation. These dry-state ‘prebiotic’ reactions (Verlander, Lohrmann, and Orgel 1973) are thus shown to be stereospecific, and both the 2′,5′ and 3′,5′ internucleotide bonds are formed by an in-line mechanism.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

Abbreviations

DAE:

1,2-diaminoethane

HPLC:

high pressure liquid chromatography

RNase:

bovine pancreatic ribonuclease A, EC 3.1.4.22

TEAB:

triethylammonium bicarbonate

tris:

tris(hydroxymethyl)aminomethane

UMP(S):

uridine monophosphorothioate

U > p:

uridine cyclic 2′,3′-phosphate

U > p(S):

uridine cyclic 2′,3′-O, O-phosphorothioate

Up(S)dT:

(P-thio)uridylylthymidine

U2′p(Rp-S)5′dT:

(P-thio)uridylylthymidine with theR configuration at phosphorous, and a 2′,5′ internucleotide linkage

References

  • Barker, G.R., Montague, M.D., Moss, R.J., Parsons, M.A. (1957). J. Chem. Soc., 3789

  • Bock, R.M., Ling, N.-S., Morell, S.A., Lipton, S.H. (1956). Arch. Biochem. Biophys.62, 253

    Google Scholar 

  • Brown, D.M., Magrath, D.I., Todd, A.R. (1952). J. Chem. Soc., 2708

  • Burgers, P.M.J., Eckstein, F. (1978). Tetrahedron Letters, 3835

  • Eckstein, F., Gindl, H. (1968). Chem. Ber.101, 1670

    Google Scholar 

  • Fox, J.J., Shugar, D. (1952). Biochim. Biophys. Acta9, 369

    Google Scholar 

  • Horvath, C. (1973). Methods Biochem. Anal.21, 79

    Google Scholar 

  • Laskowski, Sr., M. (1971). The Enzymes, P.D. Boyer, ed., 3rd ed., Vol. IV. Chap. 13; New York: Academic

    Google Scholar 

  • Levy, R.A. (1968). Principles of Solid State Physics, p. 74. New York: Academic

    Google Scholar 

  • Lohrmann, R., Orgel, L.E. (1968). Science161, 64

    Google Scholar 

  • Lohrmann, R., Orgel, L.E. (1971). Science171, 490

    Google Scholar 

  • Kalnitsky, G., Hummel, J.P., Diercks, C. (1959). J. Biol. Chem.234, 1512

    Google Scholar 

  • Markham, R., Smith, J.D. (1952). Biochem. J.52, 552

    Google Scholar 

  • Razzell, W.E., Khorana, H.G. (1959). J. Biol. Chem.234, 2105

    Google Scholar 

  • Saenger, W., Eckstein, F. (1970). J. Am. Chem. Soc.92, 4712

    Google Scholar 

  • Sawai, H. (1977). Nucleic Acids Res., Spec. Pub. No.3, S113

    Google Scholar 

  • Sherwood, E., Joshi, A., Oró, J. (1977). J. MOl. Evol.10, 193

    Google Scholar 

  • Tapiero, C.M., Nagyvary, J. (1971). Nature231, 42

    Google Scholar 

  • Usher, D.A. (1969). Proc. Natl. Acad. Sci. USA62, 661

    Google Scholar 

  • Usher, D.A., Erenrich, E.S., Eckstein, F. (1972). Proc. Natl. Acad. Sci. USA69, 115

    Google Scholar 

  • Usher, D.A., McHale, A.H., Yee, D. (1975). Anal. Chem.47, 783

    Google Scholar 

  • Verlander, M.S., Lohrmann, R., Orgel, L.E. (1973). J. Mol. Evol.2, 303

    Google Scholar 

  • Verlander, M.S., Orgel, L.E. (1974). J. Mol. Evol.3, 115

    Google Scholar 

  • Westheimer, F.H. (1968). Accts. Chem. Res.1, 70

    Google Scholar 

  • White, M.D., Bauer, S., Lapidot, Y. (1977). Nucleic Acids Res.4, 3029

    Google Scholar 

  • Yee, D. (1978). Ph.D. Thesis, Cornell University, Ithaca, New York

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Usher, D.A., Yee, D. Geometry of the dry-state oligomerization of 2′,3′-cyclic phosphates. J Mol Evol 13, 287–293 (1979). https://doi.org/10.1007/BF01731369

Download citation

  • Received:

  • Revised:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF01731369

Key words

Navigation