Abstract
A filter hybridization method employing bacterial samples and [125I]labeled chromosomal DNA as a probe was used for DNA-DNA hybridization. It was found that the hybrids had a thermal melting temperature very similar to that of duplexes formed by purified filterbound DNA. The difference in thermal denaturation midpoint between homologous and heterologous duplexes was determined for a number of strains ofAcinetobacter spp. andEnterobacter agglomerans. A comparison with the corresponding data obtained by the hydroxyapatite method showed good correlation between the two methods. The use of bacterial samples in filter hybridization omits the time-consuming DNA preparation procedure necessary for traditional DNA-DNA hybridization procedures. A simplified, two-step elution procedure is suggested for processing large numbers of strains.
Similar content being viewed by others
Literature Cited
Anderson MLM, Young BD (1985) Quantitative filter hybridization. In: Hames BD, Higgins SJ (eds) Nucleic acid hybridisation: a practical approach. Oxford UK: IRL Press, pp 73–111
Bouvet PJM, Grimont PAD (1986) Taxonomy of the genusAcinetobacter with the recognition ofAcinetobacter baumannii sp. nov.,Acinetobacter haemolyticus sp. nov.,Acinetobacter johnsonii sp. nov., andAcinetobacter junii sp. nov. and emended descriptions ofAcinetobacter calcoaceticus andAcinetobacter lwoffii. Int J Syst Bacteriol 36:228–240
Brenner DJ (1978) Characterization and clinical identification of enterobacteriaceae by DNA hybridization. Prog Clin Pathol 7:71–117
Brenner DJ, Fanning GR, Rake AV, Johnson KE (1969) Batch procedure for thermal elution of DNA from hydroxyapatite. Anal Biochem 28:447–459
De Ley J, De Smedt J (1975) Improvements of the membrane filter method for DNA∶rRNA hybridization. Antonie van Leeuwenhoek 41:287–307
Denhardt DT (1966) A membrane-filter technique for the detection of complementary DNA. Biochem Biophys Res Commun 23:641–646
Grunstein M, Hogness DS (1975) Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene. Proc Natl Acad Sci USA 72:3961–3965
Lindh E, Ursing J (1986) Clinical strains ofEnterobacter agglomerans (synonyms:Erwinia herbicola, Erwinia milletiae) identified by DNA-DNA-hybridization. Acta Pathol Microbiol Immunol Scand Sect B 94:205–213
Schildkraut C, Lifson S (1965) Dependence of the melting temperature of DNA on salt concentration. Biopolymers 3:195–208
Selin YM, Harich B, Johnson JL (1983) Preparation of labeled nucleic acids (nick translation and iodionation) for DNA homology and rRNA hybridization experiments. Curr Microbiol 8:127–132
Totten PA, Holmes KK, Handsfield HH, Knapp JS, Perine PL, Falkow S (1983) DNA hybridization technique for the detection ofNeisseria gonorrhoeae in men with urethritis. J Infect Dis 148:462–471
Totten PA, Fennell CL, Tenover FC, Wezenberg JM, Perine PL, Stamm WE, Holmes KK (1985)Campylobacter cinaedi (sp. nov.) andCampylobacter fennelliae (sp. nov.): two newCampylobacter species associated with enteric disease in homosexual men. J Infect Dis 151:131–139
Van Landschoot A, De Vos P, De Ley J (1984) An alternative parameter for Tm(e) in DNA∶rRNA hybridization studies. Syst Appl Microbiol 5:143–156
Van Landschoot A, Rossau R, De Ley J (1986) DNA∶rRNA hybridizations on directly prepared DNA membrane filters. Manchester, UK, Microbe 86, XIV International Congress of Microbiology, p 36
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Tjernberg, I., Lindh, E. & Ursing, J. A quantitative bacterial dot method for DNA-DNA hybridization and its correlation to the hydroxyapatite method. Current Microbiology 18, 77–81 (1989). https://doi.org/10.1007/BF01570828
Issue Date:
DOI: https://doi.org/10.1007/BF01570828