Summary
The halogenated 6-spiroepoxypenicillins are a series of novel semisyntheticβ-lactam compounds with highly conformationally restricted side chains incorporating an epoxide. Their biological activity profiles depend crucially on the configuration at position C-3 of that epoxide. In derivatives with aromatic-containing side chains, e.g., anilide, the 3R-compounds possess notable Gram-positive antibacterial activity and potentβ-lactamase inhibitory properties. The comparable 3S-compounds are antibacterially inactive, but retainβ-lactamase inhibitory activity.
Using the molecular simulation programs COSMIC and ASTRAL, we attempted to map a putative, lipophilic accessory binding site on the PBPs that must interact with the side-chain aromatic residue. Comparative computer-assisted modelling of the 3R, and 3S-anilides, along with benzylpenicillin, indicated that the available conformational space at room temperature for the side chains of the 3R and the 3S-anilides was mutually exclusive. The conformational space for the more flexible benzylpenicillin could accommodate the side chains ofboth the constrained penicillin derivatives. By a combination of van der Waals surface calculations and a pharmacophoric distance approach, closely coincident conformers of the 3R-anilide and benzylpenicillin were identified. These conformers must be related to the antibacterial, ‘bioactive’ conformer for the classicalβ-lactam antibiotics. From these proposed bioactive conformations, a model for the binding of benzylpenicillin to the PBPs relating the three-dimensional arrangement of a putative lipophilic S2-subsite, specific for the side-chain aromatic moiety, and the 3α-carboxylate functionality is presented.
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References
Boyd, D.B., In Morin, R.B. and Gorman, M. (Eds.) Chemistry and Biology ofβ-lactam Antibiotics, Vol. 1: Penicillins and Cephalosporins, Academic Press, New York, 1982, pp. 437–545.
Price, K.E., In Perlman, D. (Ed.) Structure-Activity Relationships among the Semisynthetic Antibiotics, Academic Press, New York, 1977, pp. 1–59 and 61–86.
Sassiver, M.L. and Lewis, A., ibid., pp. 87–160.
Webber, J.A. and Ott, J.L., ibid., pp. 161–237.
Jung, F.A., Pilgrim, W.R., Poyser, J.P. and Siret, P.J., In Sammes, P.G. (Ed.) Topics in Antibiotic Chemistry, Vol. 4, Wiley, New York, 1980, pp. 11–265.
Recently, even the necessity for the presence of aβ-lactam ring to instil ‘β-lactam-type’ antibacterial activity has been called into question. See for example: Nozaki, Y., Katayama, N., Ono, H., Tsubotani, S., Harada, S., Okazaki, H. and Nakao, Y., Nature, 325 (1987), 179–180; also: Natsugari, H., Kawano, Y., Morimoto, K., Yoshioka, K. and Ochiai, M., J. Chem. Soc., Chem. Commun., (1987) 62–63.
Woodward, R.B., Philos. Trans. R. Soc. Lond. Ser. B., 289 (1980) 239–250.
Kaiser, G.V. and Kukolja, S., In Flynn, E.H. (Ed.) Cephalosporins and Penicillins: Chemistry and Biology, Academic Press, New York, 1972, pp. 74–133.
Schechter, I. and Berger, A., Biochem. Biophys. Res. Commun., 27 (1967) 157–162.
Hassall, C.H., Kröhn, A., Moody, C.J. and Thomas, W.A., J. Chem. Soc., Perkin Trans. 1 (1984) 155–164.
Kessler, H., Angew. Chem. Int. Ed. Engl., 21 (1982) 512–523.
Hruby, V., J., Trends Pharm. Sci., 6 (1985) 259–262.
Bycroft, B.W., Shute, R.E. and Begley, M.J., J. Chem. Soc., Chem. Commun., (1988) 274–276.
Bycroft, B.W., Shute, R.E. and Begley, M.J., J. Chem. Soc., Chem. Commun., (1988) 276–278.
Gledhill, L., Bycroft, B.W. and Williams, P., 27th Interscience Conference on Antimicrobial Agents and Chemotherapy, New York, (Abstract No. 1206), Am. Soc. Microbiol. Publ., Washington, DC, U.S.A., 1987.
Gledhill, L., Ph.D. Thesis, University of Nottingham, U.K., 1988.
Vinter, J.G., Davis, A. and Saunders, M.R., J. Comput. Aided Mol. Design, 1 (1987) 31–51.
Sweet, R.M., In Flynn, E.H. (Ed.) Cephalosporins and Penicillins: Chemistry and Biology, Academic Press, New York, 1972, pp. 280–309
Boles, M.O. and Girven, R.J., Acta Crystallogr., Sect. B, 32 (1976) 2279–2284.
Keith, D.D., Tengi, J., Rossman, P., Todaro, L. and Weigele, M., Tetrahedron, 39 (1983) 2445–2458.
Fazakerly, G.V. and Jackson, G.E., J. Inorg. Nucl. Chem., 37 (1975) 2371–2375.
Clayden, N.J., Dobson, C.M., Lian, L.-Y. and Twyman, J.M., J. Chem. Soc., Perkin Trans. 2, (1986) 1933–1940.
Cohen, N.C., J. Med. Chem., 26 (1983) 259–264.
Dexter, D.D. and van der Veen, J.M., J. Chem. Soc., Perkin Trans. 1 (1978) 185–190.
Lo, Y.S. and Sheehan, J.C., J. Am. Chem. Soc., 94 (1972) 8253.
Lo, Y.S. and Sheehan, J.C., J. Org. Chem., 38 (1973) 3227–3228.
Rolinson, G.N., J. Antimicrob. Agents Chemother., 17 (1986) 5–36.
Spratt, B.G., Proc Nat. Acad. Sci. U.S.A., 72 (1975) 2999–3003.
Blanpain, P.C., Nagy, J.B., Laurent, G.H. and Durant, F.V., J. Med. Chem., 23 (1980) 1283–1292.
Charlier, P., Dideberg, O., Frère, J.-M., Moews, P.C. and Knox, J.R., J. Mol. Biol., 171 (1983) 237–238.
Kelly, J.A., Dideberg, O., Charlier, P., Wéry, J.P., Libert, M., Moews, P.C., Knox, J.R., Frère, J.-M. and Ghuysen, J.-M., Science, 231 (1986) 1429–1431.
Samraoui, B., Sutton, B.J., Todd, R.J., Artymiuk, P.J., Waley, S.G. and Phillips, D.C., Nature, 320 (1986) 378–380.
Herzberg, O. and Moult, J., Science, 236 (1987) 694–701.
Dideberg, O., Charlier, P., Wéry, J.-P., Dehottay, P., Dusart, J., Erpicum, T., Frère, J.-M. and Ghuysen, J.-M., Biochem. J., 245 (1987) 911–913.
Kelly, J.A., Knox, J.R., Moews, P.C., Hite, G.J., Bartolone, J.B., Zhao, H., Joris, B., Frère, J.-M. and Ghuysen, J.-M., J. Biol. Chem., 260 (1985) 6449–6458.
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This work has been reported in preliminary form at the 4th Royal Society of Chemistry International Symposium on Recent Advances in the Chemistry ofβ-lactam Antibiotics, Churchill College, Cambridge, U.K., 3–6 July 1988.
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Shute, R.E., Jackson, D.E. & Bycroft, B.W. Highly conformationally constrained halogenated 6-spiroepoxypenicillins as probes for the bioactive side-chain conformation of benzylpenicillin. J Computer-Aided Mol Des 3, 149–164 (1989). https://doi.org/10.1007/BF01557725
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DOI: https://doi.org/10.1007/BF01557725