Summary
The nucleotide sequences of coat protein (CP) genes of two Japanese strains of melon necrotic spot virus·(MNSV-NH and MNSV-S) were determined. The size of the CP genes of both strains was 1170 nucleotides. Comparisons of the deduced amino acid sequences among MNSV strains showed more than 95% homology, and those among other carmoviruses showed 31–34% homology. cDNAs of MNSV CP genes were cloned into anEscherichia coli expression fusion vector and MNSV-NH and MNSV-S CPs were successfully produced. Furthermore, synthetic oligonucleotide primers were used for differentiating MNSV strains by reverse transcription-polymerase chain reaction method.
References
Bos L, Van Dorst HJM, Huttinga H, Maat DZ (1984) Further characterization of melon necrotic spot virus causing severe disease in glasshouse cucumbers in the Netherlands and its control. Neth J Plant Pathol 90: 55–69
Carrington JC, Morris TJ, Stockley PG, Harrison SC (1987) Structure and assembly of turnip crinkle virus. IV. Analysis of the coat protein gene and implications of the subunit primary structure. J Mol Biol 194: 265–276
Carrington JC, Heaton LA, Zuidema D, Hillman BI, Morris TJ (1989) The genome structure of turnip crinkle virus. Virology 170: 219–226
Gubler U, Hoffman BJ (1983) A simple and very efficient method for generating cDNA libralies. Gene 25: 263–269
Guilley H, Carrington JC, Balàzs E, Jonard G, Richards K, Morris TJ (1985) Nucleotide sequence and genome organization of carnation mottle virus RNA. Nucleic Acids Res 13: 6663–6677
Harrison SC, Olson AJ, Schutt CE, Winkler FK, Brigogne G (1978) Tomato bushy stunt virus at 2.9 Å resolution. Nature 276: 368–373
Hibi T, Furuki I (1985) Melon necrotic spot virus. CMI/AAB Descriptions of Plant Viruses, no. 302
Hillman BI, Hearne P, Rochon D, Morris TJ (1989) Organization of tomato bushy stunt virus genome: characterization of the coat protein gene and 3′ terminus. Virology 169: 42–50
Hogle JM, Maeda A, Harrison SC (1986) Structure and assembly of turnip crinkle virus. I. X-ray crystallographic structure analysis at 3.2 Å resolution. J Mol Biol 191: 625–638
Holms DS, Quigley M (1981) A rapid boiling method for the preparation of bacterial plasmids. Anal Biochem 114: 513–524
Keese P, Martin RR, Kawchuk LM, Waterhouse PM, Gerlach WL (1990) Nucleotide sequences of an Australian and a Canadian isolate of potato leafroll luteovirus and their relationships with two European isolates. J Gen Virol 71: 719–724
Kohnen PD, Dougherty WG, Hampton RO (1992) Detection of pea seedborne mosaic potyvirus by sequence specific enzymatic amplification. J Virol Methods 37: 253–258
Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680–685
Langeveld SA, Dore J-M, Memelink J, Derks AFLM, van der Vlugt CIM, Asjes CJ, Bol JF (1991) Identification of potyviruses using the polymerase chain reaction with degenerate primers. J Gen Virol 72: 1531–1541
Matsuo K (1993) Detection of three strains of melon necrotic spot virus by three ELISA procedures and their distribution in Japan. Ann Phytopathol Soc Japan 59: 26–32
Matsuo K, Kameya-Iwaki M, Ota T (1991) Two new strains of melon necrotic spot virus. Ann Phytopathol Soc Japan 57: 558–567
Matthews REF (1993) Overview. In: Matthews REF (ed) Diagnosis of plant virus diseases. CRC Press, Boca Raton, pp 1–14
Ohshima K, Hataya T, Sano T, Inoue AK, Shikata E (1991) Comparison of biological properties, serological characteristics and amino acid sequences of coat protein between potato virus Y ordinary strain and necrotic strain. Ann Phytopathol Soc Japan 57: 615–622
Ohshima K, Nakaya T, Matsumura T, Shikata E, Kimura I (1993) Nucleotide sequences of coat protein and 17 K protein genes for a potato leafroll virus Japanese isolate. Ann Phytopathol Soc Japan 59: 204–208
Pappu SS, Brand R, Pappu HR, Rybicki EP, Gough KH, Frenkel MJ, Niblett CL (1993) A polymerase chain reaction method adapted for selective amplification and cloning of 3′ sequences of potyviral genomes: application to dasheen mosaic virus. J Virol Methods 41: 9–20
Riviere CJ, Pot J, Tremaine JH, Rochon DM (1989) Coat protein of melon necrotic spot carmovirus is more similar to those of tombusviruses than those of carmoviruses. J Gen Virol 70: 3033–3042
Riviere CJ, Rochon DM (1990) Nucleotide sequence and genomic organization of melon necrotic spot virus. J Gen Virol 71: 1887–1896
Rosner A, Ginzburg I, Bar-Joseph M (1983) Molecular cloning of complementary DNA sequences of citrus tristeza virus RNA. J Gen Virol 64: 1757–1763
Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB, Erlich HA (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 230: 1350–1354
Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74: 5463–5467
Shukla DD, Ward CW (1989) Structure of potyvirus coat proteins and its application in the taxonomy of the potyvirus group. Adv Virus Res 36: 273–314
Tonegusso F, Glynn S, Levi E, Mjolsness S, Hayday A (1988) Use of a chemically modified T7 DNA polymerase for manual and automated sequencing of supercoiled DNA. Biotechniques 6: 460–469
Towbin H, Staehelin T, Gordon J (1979) Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellurose sheets: procedure and applications. Proc Natl Acad Sci USA 76: 4350–4354
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Ohshima, K., Matsuo, K. & Sako, N. Nucleotide sequences and expression inEscherichia coli of the coat protein genes from two strains of melon necrotic spot virus. Archives of Virology 138, 149–160 (1994). https://doi.org/10.1007/BF01310046
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DOI: https://doi.org/10.1007/BF01310046